Typing tool
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Typing tool
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Complete norovirus genomes
| KT589391 | GII.17 | |
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| GII.P31 |
ORF1: 4..5097
ORF2: 5078..6700
ORF3: 6700..7479
LOCUS KT589391 7550 bp RNA linear VRL 16-SEP-2015
DEFINITION Norovirus GII/Hu/HKG/2015/GII.Pe_GII.17/CUHK-NS-682, complete
genome.
ACCESSION KT589391
VERSION KT589391.1
KEYWORDS .
SOURCE Norovirus GII/Hu/HKG/2015/GII.Pe_GII.17/CUHK-NS-682
ORGANISM Norovirus GII/Hu/HKG/2015/GII.Pe_GII.17/CUHK-NS-682
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7550)
AUTHORS Chan,M.C.W., Hung,T.T.N., Kwok,K. and Chan,P.K.S.
TITLE A novel recombinant GII.Pe-GII.17 norovirus
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7550)
AUTHORS Chan,M.C.W., Hung,T.T.N., Kwok,K. and Chan,P.K.S.
TITLE Direct Submission
JOURNAL Submitted (24-AUG-2015) Department of Microbiology, The Chinese
University of Hong Kong, CUHK, Shatin 852, Hong Kong
FEATURES Location/Qualifiers
source 1..7550
/organism="Norovirus
GII/Hu/HKG/2015/GII.Pe_GII.17/CUHK-NS-682"
/mol_type="genomic RNA"
/isolate="GII/Hu/HKG/2015/GII.Pe_GII.17/CUHK-NS-682"
/host="Homo sapiens"
/db_xref="taxon:1712669"
/geo_loc_name="Hong Kong"
/collection_date="30-Jun-2015"
gene 4..5097
/gene="ORF1"
CDS 4..5097
/gene="ORF1"
/codon_start=1
/product="polyprotein"
/protein_id="ALD83747.1"
/translation="MASNDASAAAAANSNNDTAKSSSDGVLSSMAVTFKRALGARPKQ
PPPKEIPPRPPRPPTPELVKKIPPPPPNGEDEPVVSYSAKDGVSGLPELTTVRQPDEI
NTAFSVPPLNQRENRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLA
KVELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWL
SRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLK
PLNILNILATCDWTFAGVVESLILLAELFGVYWTPPDVSAMIAPLLGDYELQGPEDLA
VELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKK
EEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKS
ASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLARELAK
KIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPL
TLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVERAK
RDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASG
LLHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMPD
LKQALKNVAIRKCQIVYGGSTYTLEADGKGSVKIDKVQSAAVQTNNEIAGALHHLRCA
RIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDIEETASKDGCPK
PKEDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTG
SEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSL
FITSTHVIPQGAKEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTV
ATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCG
CPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGENKGTYCGAPILGPG
SAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRG
KPPKPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNG
ESFTGRLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLAT
MIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDST
QQRDVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQ
WNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEY
GLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNH
EDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPM
FRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5078..6700
/gene="VP1"
CDS 5078..6700
/gene="VP1"
/codon_start=1
/product="VP1"
/protein_id="ALD83748.1"
/translation="MKMASNDAAPSNDGATGLVPEVNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYNNQPTNRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTISELTNSRFPVPVDSLFTAQNNNLNVQCQNGRCTLDGELQGTT
QLQPSGICAFRGKITADVRPNHDDRWHMQLTNLNGTPFDPTEDVPAPLGTPDFTGLLF
GVASQRNVQPNPNTTRAHEAVISTTSSQFVPKLGSINFGSTSEDFIVGQPTKFTPVGI
KIEDGHAFDQWTLPRYSGHLTLNMNLAPPVAPNFPGEQLLFFRSNVPCAGGISDGVID
CLLPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRTGYITVAHSGDYPLV
VPSNGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6700..7479
/gene="VP2"
CDS 6700..7479
/gene="VP2"
/codon_start=1
/product="VP2"
/protein_id="ALD83749.1"
/translation="MAGAFIAGLAGDMLTNTVGSLANAGANAITQKIEFENNKQLQSA
SFQHDKDMLQAQVAATKQLQADMIAIKQGILTAGGFSPTDAARGAVGAPMTKVLDWSG
TRYWAPNSTRTTGYSGQFTSAPVHMPTKTIQPTPVKRTQPLSSSSGSIYSLSTQSTAL
TKPSSGSSSVSSASTQSTKLSSVSSMDRTANWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTPAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 aagatggcgt ctaacgacgc ttccgctgcc gctgctgcca acagcaacaa cgacaccgca
61 aaatcttcaa gtgatggtgt gctctctagc atggctgtca cttttaaacg ggccctcggg
121 gcgcggccta aacagccgcc cccgaaggaa ataccaccca gacccccacg gccacccaca
181 ccagagttgg tcaaaaagat ccctcctccc ccacccaacg gggaggatga accagtggtt
241 tcctatagcg ccaaagatgg tgtttccgga ctgcctgagc tcaccactgt cagacaaccg
301 gatgaaatta acacggcgtt cagtgttccc ccgctcaacc aaagggagaa cagggacgcc
361 aaggaaccat taactggaac aattattgaa atgtgggatg gagaaatcta ccattacggc
421 ctgtacgtgg aacgaggtct tatacttggt gtgcataagc caccggcggc catcagcctt
481 gccaaagtcg agctaacacc actctctctg ttctggagac ctgtatacac accccagtat
541 ctcatctctc cagacactct caggagacta catggggagt cattccccta cactgcattt
601 gacaacaatt gctacgcctt ctgttgttgg gtattagacc taaacgactc atggctaagc
661 aggagaatga ttcagagaac aacaggtttc ttcagaccat accaggattg gaacaggaaa
721 cccctcccca ctatggatga ttccaaattg aagaaggtag ccaacatatt cttgtgcact
781 ttgtcttcac tattcaccag gcccattaag gacataatag gaaagctgaa accccttaac
841 atccttaaca ttctggctac gtgtgattgg accttcgcag gcgtagtgga atccttgata
901 ctcttggcag agctctttgg agtttactgg acacccccag atgtgtctgc gatgatcgcc
961 cccttactag gagattatga attgcaagga cctgaggacc ttgcagtaga actggtccca
1021 gtggtgatgg gggggatagg tttggtgcta ggatttacca aagagaaaat tggaaagatg
1081 ctatcatccg ctgcatctac tttgagagct tgtaaagacc ttggtgcata cggactggaa
1141 attttaaaac tagtcatgaa atggttcttc ccaaagaaag aggaagcaaa tgaactggct
1201 atggtgagat ccatcgagga tgcagtgtta gacctcgaag caattgaaaa caatcacatg
1261 accaccctgc tcaaagacaa agacagcttg gcaacctaca tgagaaccct tgaccttgag
1321 gaggagaaag ctagaaaact ctcaaccaaa tctgcttcac ccgatattgt gggcacaatc
1381 aacgcccttc tggcaagaat cgctgccgca cgctccctag tgcatcgggc gaaagaagag
1441 ctctccagca ggccgagacc tgtcgttgtg atgatatcgg ggaaaccagg gataggaaaa
1501 actcaccttg ccagggagtt ggccaagaag atcgcagcct ccctcacagg ggaccagcgt
1561 gtgggcctta tcccgcgcaa tggtgttgac cactgggacg catacaaggg tgaaagagta
1621 gtcctatggg acgactatgg aatgagcaac cccatccatg acgccctcag attgcaggaa
1681 cttgctgaca cttgccccct cacgctaaat tgtgacagaa ttgagaacaa aggaaaagtc
1741 tttgacagtg atgccataat tatcaccacc aatctggcca acccagcacc actggactat
1801 gtcaacttcg aagcgtgctc gaggcgcatt gacttcctcg tgtacgcaga agctccggag
1861 gtggaaaggg caaagcgcga cttcccaggt caacctgaca tgtggaagaa cgctttcagc
1921 cctgacttct cacacataaa actgtcattg gctccacagg gtggttttga caagaacggc
1981 aacaccccgc atggaaaagg tgtcatgaag accctcacca ctggctccct catcgcccga
2041 gcatcagggc tactccatga gagactagat gaatatgaac tgcaaggccc agccctcacc
2101 actttcaact ttgatcgcaa caagatactt gcttttagac agcttgctgc tgaaaacaag
2161 tatgggctga tggatacaat gagagttgga aaacagctca aggatgtcaa gactatgcca
2221 gacctcaaac aagcactcaa gaatgtcgcg atcaggaagt gtcagatagt gtacggtggt
2281 agcacctaca cacttgaggc cgatggcaag ggtagtgtga aaattgacaa agtgcaaagt
2341 gctgctgtgc aaactaacaa tgaaatagcc ggcgccctac accacctaag gtgcgccaga
2401 atcagatact atgttaagtg tgtccaggag gcactgtatt ccatcattca aatcgctggg
2461 gctgcattcg tcaccacgcg catcgctaag cgcatgaaca tacagaatct ctggtccaag
2521 ccacaggtgg aagacataga agagacggcc agcaaagatg gttgcccaaa acccaaagaa
2581 gatgaagagt ttgttgtttc atccgacgac atcaaaactg agggcaagaa agggaagaac
2641 aagtctggtc gtggcaagaa gcacacagcc ttctcaagta aagggctcag tgatgaggag
2701 tacgatgagt acaagagaat cagagaagaa aggaatggca agtattccat agaagagtac
2761 ctacaggaca gagacaagta ctatgaggag gtggctattg ccagggcaac cgaagaagac
2821 ttctgtgaag aagaagaggc caaaatccgg cagagaattt tcagaccaac aaggaagcaa
2881 cgcaaagaag agagggcctc tctcggcttg gtcacaggct ctgaaattag gaagagaaac
2941 ccagaagact ttaagcccaa gggaaagctg tgggctgatg atgacagaag tgttgactac
3001 aatgagaaac tcaactttga ggccccgcca agcatctggt cgcggatagt caactttggt
3061 tcaggttggg gcttctgggt ctcccccagt ctattcataa catcaaccca tgtcataccc
3121 cagggtgcaa aagagttctt cggagtctct atcaaacaaa tccagataca caaatcaggt
3181 gaattctgtc gattgagatt cccaaaacca atcagaactg atgtgacggg catgattcta
3241 gaagaaggtg cgcccgaagg gaccgtggcc acactactca tcaagagacc aactggagag
3301 ctcatgcctc tggcagccag aatgggaacc catgcaacca tgaagattca ggggcgcaca
3361 gttggaggac aaatgggtat gctcctgaca ggatccaacg ccaagagcat ggacctaggc
3421 acaacaccag gtgactgcgg ctgtccctac atctacaaga gagggaatga ctacgtggtc
3481 ataggggtcc acacggccgc tgcccgtgga ggaaacactg tcatatgtgc cacccagggg
3541 agtgagggag aagccacact tgaaggaggt gaaaacaaag gaacatactg cggtgcacca
3601 atcttgggcc cagggagtgc tccaaaactc agcaccaaga ctaagttttg gagatcatcc
3661 acaacaccac tcccgcctgg tacctacgaa ccagcctacc tcggcggcaa agatcccaga
3721 gtcaaaggtg gtccttcatt gcaacaagtt atgagggacc agctaaagcc attcacagaa
3781 cccagaggta aaccaccaaa accaaatgtg ttggaagctg ccaagaaaac catcatcaac
3841 gttcttgagc aaacaattga cccacctcaa aaatggtcat tcgcgcaagc ttgcgcatcc
3901 cttgacaaaa ccacctccag cggccatccg caccatatgc ggaaaaacga ttgttggaat
3961 ggggagtcct tcacaggaag attggcagat caggcctcca aggccaacct aatgtttgaa
4021 gagggaaaga acatgactcc agtctacaca ggtgcactta aagatgaatt ggtaaagact
4081 gacaaaattt atggtaagat caagaagagg cttctgtggg gctcagactt ggcgaccatg
4141 atacggtgcg cccgagcttt tggaggtctt atggatgaac tcaaggcaca ctgtgtcacc
4201 cttcctgtca gagttggtat gaacatgaat gaggatggcc ccatcatctt tgagaaacac
4261 tccagatata aatatcacta tgatgctgat tattcccggt gggactcgac acaacaaagg
4321 gatgtgctgg cagcagcact agaaattatg gttaaattct ctccagaacc acacctggct
4381 caggtagttg cagaagacct cctctccccc agtgtaatgg atgtaggtga ctttcaaata
4441 tcaataagtg agggactccc ctctggggtg ccttgcacct cccagtggaa ctccatcgcc
4501 cactggctcc tcactctttg tgcactctct gaagtcacgg acctgtcccc tgacatcatc
4561 caggccaact cccttttctc cttctatggt gatgatgaga ttgtgagcac agacataaag
4621 ttggacccag agaagctgac agcaaaactc aaggagtacg ggctgaaacc aacccgtccc
4681 gacaaaactg aaggacccct tgttatctct gaagatctgg atggcctgac attcctccgg
4741 aggactgtga cccgtgaccc agctggttgg tttggaaaat tggaacaaag ctcaattctc
4801 aggcaaatgt actggactag gggtcccaac catgaagatc catctgaaac aatgatacca
4861 cactcccaaa gacccataca attgatgtcc ttgctgggcg aggctgcact ccacggccca
4921 gcattttaca gcaaaattag taaattggtc attgcagagt tgaaggaagg tggcatggat
4981 ttttacgtgc ccagacaaga gccaatgttc agatggatga gattctcaga tctgagcacg
5041 tgggagggcg atcgcaatct ggctcccagc tttgtgaatg aagatggcgt cgaatgacgc
5101 cgctccatct aatgatggtg ccacgggcct cgtcccagag gtcaacaacg agacccttcc
5161 tctggaaccg gtagcgggtg cagctattgc cgcgcctgtt actggccaaa ataatataat
5221 tgatccctgg attagaacaa attttgtaca agcacccaat ggggagttca cagtctcacc
5281 cagaaactct cctggagaaa ttcttctaaa tttggaattg ggtcctgatt taaatccata
5341 tctggcacat ttatctagaa tgtataatgg gtacgctggt ggcgtagaag ttcaagtcct
5401 ccttgcaggg aatgcgttca ctgcaggaaa gattctcttc gctgccgtac caccaaattt
5461 cccagttgaa ttcttgagtc ctgcacaaat caccatgttg ccacatttaa tagttgatgt
5521 tagaaccctt gaacccatca tgataccact ccctgatgtt aggaacacct tcttccatta
5581 caataatcaa cctaccaatc gcatgcgatt ggtagccatg ttgtacaccc ccctgagatc
5641 taatggttct ggtgatgatg ttttcacagt gtcatgtaga gtgctaacta gacccacccc
5701 agattttgag ttcacatatt tggtcccccc ttcggtagag tctaagacta aacccttttc
5761 tctgcccata ctaaccatct ctgaattgac caattcaaga tttcctgtac cggtggattc
5821 attgttcaca gcccaaaaca ataatcttaa tgttcaatgt caaaatggtc gctgcacatt
5881 agatggtgag ttgcagggaa ccactcagtt gcaaccatca ggcatctgcg cctttagagg
5941 caaaataacg gcagatgtac gtccaaacca cgatgacaga tggcatatgc aattgacaaa
6001 cctcaatgga acccccttcg acccaacaga ggatgtgcca gctccactgg gcaccccaga
6061 tttcacaggc cttctcttcg gagtggcaag ccaaagaaat gttcaaccta acccaaacac
6121 caccagggca catgaagccg tgatatccac aaccagttca cagtttgtgc caaaattagg
6181 atcaatcaac tttggtagca caagtgaaga tttcattgtg ggccagccca caaaatttac
6241 accagttggc atcaagattg aggatggaca tgcatttgat caatggaccc tacccaggta
6301 ttcaggccat ttaactctca atatgaatct tgccccacct gttgctccaa atttccctgg
6361 tgaacaatta ctcttcttta ggtcaaatgt cccctgtgcc ggcggcatta gcgatggtgt
6421 catcgattgc ttgttgcctc aggagtggat acagcacttc taccaggagt ctgctccctc
6481 ccagtccgat gtggccctga tcagatacgt caaccccgac acgggccgca cacttttcga
6541 ggcgaaactc catagaacag gctacatcac tgttgctcat tcaggtgatt atccccttgt
6601 tgtcccctcc aatggatact ttagatttga ttcttgggtg aaccaatttt actcacttgc
6661 ccccatggga accgggaatg ggcgcagacg ggtgcagtaa tggcaggagc ttttatagca
6721 ggtctagcag gtgacatgct caccaacaca gttggctcat tggcgaacgc cggggccaat
6781 gccatcactc aaaagataga atttgaaaac aacaaacagc tccaatctgc ctccttccaa
6841 catgacaaag acatgctcca agcacaagtg gctgccacca agcagttaca ggctgatatg
6901 atcgccatca agcaggggat actgaccgcg ggcggctttt cccctactga tgcggcgaga
6961 ggagcagtgg gtgcacccat gaccaaagtc ctcgactggt ctggtactcg ttactgggct
7021 ccaaattcca cgaggacaac aggttactca gggcagttta catcagcacc agtgcacatg
7081 cctacaaaaa caattcagcc cactcctgtt aaaaggactc agcctctttc ttcctcttca
7141 ggtagtatct atagtctttc aacacagagc actgccttga ccaagccctc ttcaggctct
7201 tcttctgttt cttctgcttc tacacaatct acaaaattga gttcagtttc ttcaatggat
7261 agaacagcaa attgggtaaa tcagcaaaga agcctcagcc ccttcatgag tggtgcactc
7321 aacatatctc atgtaacacc tccatcgagc agggcttcga gttcggggac agtctcaact
7381 gtacccaaag aagttttgga ctcctggaca cctgcattca acacacacag acagccgctc
7441 ttcgcacacc tcagagtgag gggggagtca cgtgtttagt gaaaagaatc aattagtttt
7501 aattaaattt tgattggatt taattttaat tggatctttt aaaaaaaaaa
//