Typing tool
|
Complete norovirus genomes
KT589391 | GII.17 | ||
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GII.P31 |
ORF1: 4..5097 ORF2: 5078..6700 ORF3: 6700..7479LOCUS KT589391 7550 bp RNA linear VRL 16-SEP-2015 DEFINITION Norovirus GII/Hu/HKG/2015/GII.Pe_GII.17/CUHK-NS-682, complete genome. ACCESSION KT589391 VERSION KT589391.1 KEYWORDS . SOURCE Norovirus GII/Hu/HKG/2015/GII.Pe_GII.17/CUHK-NS-682 ORGANISM Norovirus GII/Hu/HKG/2015/GII.Pe_GII.17/CUHK-NS-682 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7550) AUTHORS Chan,M.C.W., Hung,T.T.N., Kwok,K. and Chan,P.K.S. TITLE A novel recombinant GII.Pe-GII.17 norovirus JOURNAL Unpublished REFERENCE 2 (bases 1 to 7550) AUTHORS Chan,M.C.W., Hung,T.T.N., Kwok,K. and Chan,P.K.S. TITLE Direct Submission JOURNAL Submitted (24-AUG-2015) Department of Microbiology, The Chinese University of Hong Kong, CUHK, Shatin 852, Hong Kong FEATURES Location/Qualifiers source 1..7550 /organism="Norovirus GII/Hu/HKG/2015/GII.Pe_GII.17/CUHK-NS-682" /mol_type="genomic RNA" /isolate="GII/Hu/HKG/2015/GII.Pe_GII.17/CUHK-NS-682" /host="Homo sapiens" /db_xref="taxon:1712669" /country="Hong Kong" /collection_date="30-Jun-2015" gene 4..5097 /gene="ORF1" CDS 4..5097 /gene="ORF1" /codon_start=1 /product="polyprotein" /protein_id="ALD83747.1" /translation="MASNDASAAAAANSNNDTAKSSSDGVLSSMAVTFKRALGARPKQ PPPKEIPPRPPRPPTPELVKKIPPPPPNGEDEPVVSYSAKDGVSGLPELTTVRQPDEI NTAFSVPPLNQRENRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLA KVELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWL SRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLK PLNILNILATCDWTFAGVVESLILLAELFGVYWTPPDVSAMIAPLLGDYELQGPEDLA VELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKK EEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKS ASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLARELAK KIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPL TLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVERAK RDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASG LLHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMPD LKQALKNVAIRKCQIVYGGSTYTLEADGKGSVKIDKVQSAAVQTNNEIAGALHHLRCA RIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDIEETASKDGCPK PKEDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY SIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTG SEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSL FITSTHVIPQGAKEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTV ATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCG CPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGENKGTYCGAPILGPG SAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRG KPPKPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNG ESFTGRLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLAT MIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDST QQRDVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQ WNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEY GLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNH EDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPM FRWMRFSDLSTWEGDRNLAPSFVNEDGVE" gene 5078..6700 /gene="VP1" CDS 5078..6700 /gene="VP1" /codon_start=1 /product="VP1" /protein_id="ALD83748.1" /translation="MKMASNDAAPSNDGATGLVPEVNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYNNQPTNRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTISELTNSRFPVPVDSLFTAQNNNLNVQCQNGRCTLDGELQGTT QLQPSGICAFRGKITADVRPNHDDRWHMQLTNLNGTPFDPTEDVPAPLGTPDFTGLLF GVASQRNVQPNPNTTRAHEAVISTTSSQFVPKLGSINFGSTSEDFIVGQPTKFTPVGI KIEDGHAFDQWTLPRYSGHLTLNMNLAPPVAPNFPGEQLLFFRSNVPCAGGISDGVID CLLPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRTGYITVAHSGDYPLV VPSNGYFRFDSWVNQFYSLAPMGTGNGRRRVQ" gene 6700..7479 /gene="VP2" CDS 6700..7479 /gene="VP2" /codon_start=1 /product="VP2" /protein_id="ALD83749.1" /translation="MAGAFIAGLAGDMLTNTVGSLANAGANAITQKIEFENNKQLQSA SFQHDKDMLQAQVAATKQLQADMIAIKQGILTAGGFSPTDAARGAVGAPMTKVLDWSG TRYWAPNSTRTTGYSGQFTSAPVHMPTKTIQPTPVKRTQPLSSSSGSIYSLSTQSTAL TKPSSGSSSVSSASTQSTKLSSVSSMDRTANWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTPAFNTHRQPLFAHLRVRGESRV" ORIGIN 1 aagatggcgt ctaacgacgc ttccgctgcc gctgctgcca acagcaacaa cgacaccgca 61 aaatcttcaa gtgatggtgt gctctctagc atggctgtca cttttaaacg ggccctcggg 121 gcgcggccta aacagccgcc cccgaaggaa ataccaccca gacccccacg gccacccaca 181 ccagagttgg tcaaaaagat ccctcctccc ccacccaacg gggaggatga accagtggtt 241 tcctatagcg ccaaagatgg tgtttccgga ctgcctgagc tcaccactgt cagacaaccg 301 gatgaaatta acacggcgtt cagtgttccc ccgctcaacc aaagggagaa cagggacgcc 361 aaggaaccat taactggaac aattattgaa atgtgggatg gagaaatcta ccattacggc 421 ctgtacgtgg aacgaggtct tatacttggt gtgcataagc caccggcggc catcagcctt 481 gccaaagtcg agctaacacc actctctctg ttctggagac ctgtatacac accccagtat 541 ctcatctctc cagacactct caggagacta catggggagt cattccccta cactgcattt 601 gacaacaatt gctacgcctt ctgttgttgg gtattagacc taaacgactc atggctaagc 661 aggagaatga ttcagagaac aacaggtttc ttcagaccat accaggattg gaacaggaaa 721 cccctcccca ctatggatga ttccaaattg aagaaggtag ccaacatatt cttgtgcact 781 ttgtcttcac tattcaccag gcccattaag gacataatag gaaagctgaa accccttaac 841 atccttaaca ttctggctac gtgtgattgg accttcgcag gcgtagtgga atccttgata 901 ctcttggcag agctctttgg agtttactgg acacccccag atgtgtctgc gatgatcgcc 961 cccttactag gagattatga attgcaagga cctgaggacc ttgcagtaga actggtccca 1021 gtggtgatgg gggggatagg tttggtgcta ggatttacca aagagaaaat tggaaagatg 1081 ctatcatccg ctgcatctac tttgagagct tgtaaagacc ttggtgcata cggactggaa 1141 attttaaaac tagtcatgaa atggttcttc ccaaagaaag aggaagcaaa tgaactggct 1201 atggtgagat ccatcgagga tgcagtgtta gacctcgaag caattgaaaa caatcacatg 1261 accaccctgc tcaaagacaa agacagcttg gcaacctaca tgagaaccct tgaccttgag 1321 gaggagaaag ctagaaaact ctcaaccaaa tctgcttcac ccgatattgt gggcacaatc 1381 aacgcccttc tggcaagaat cgctgccgca cgctccctag tgcatcgggc gaaagaagag 1441 ctctccagca ggccgagacc tgtcgttgtg atgatatcgg ggaaaccagg gataggaaaa 1501 actcaccttg ccagggagtt ggccaagaag atcgcagcct ccctcacagg ggaccagcgt 1561 gtgggcctta tcccgcgcaa tggtgttgac cactgggacg catacaaggg tgaaagagta 1621 gtcctatggg acgactatgg aatgagcaac cccatccatg acgccctcag attgcaggaa 1681 cttgctgaca cttgccccct cacgctaaat tgtgacagaa ttgagaacaa aggaaaagtc 1741 tttgacagtg atgccataat tatcaccacc aatctggcca acccagcacc actggactat 1801 gtcaacttcg aagcgtgctc gaggcgcatt gacttcctcg tgtacgcaga agctccggag 1861 gtggaaaggg caaagcgcga cttcccaggt caacctgaca tgtggaagaa cgctttcagc 1921 cctgacttct cacacataaa actgtcattg gctccacagg gtggttttga caagaacggc 1981 aacaccccgc atggaaaagg tgtcatgaag accctcacca ctggctccct catcgcccga 2041 gcatcagggc tactccatga gagactagat gaatatgaac tgcaaggccc agccctcacc 2101 actttcaact ttgatcgcaa caagatactt gcttttagac agcttgctgc tgaaaacaag 2161 tatgggctga tggatacaat gagagttgga aaacagctca aggatgtcaa gactatgcca 2221 gacctcaaac aagcactcaa gaatgtcgcg atcaggaagt gtcagatagt gtacggtggt 2281 agcacctaca cacttgaggc cgatggcaag ggtagtgtga aaattgacaa agtgcaaagt 2341 gctgctgtgc aaactaacaa tgaaatagcc ggcgccctac accacctaag gtgcgccaga 2401 atcagatact atgttaagtg tgtccaggag gcactgtatt ccatcattca aatcgctggg 2461 gctgcattcg tcaccacgcg catcgctaag cgcatgaaca tacagaatct ctggtccaag 2521 ccacaggtgg aagacataga agagacggcc agcaaagatg gttgcccaaa acccaaagaa 2581 gatgaagagt ttgttgtttc atccgacgac atcaaaactg agggcaagaa agggaagaac 2641 aagtctggtc gtggcaagaa gcacacagcc ttctcaagta aagggctcag tgatgaggag 2701 tacgatgagt acaagagaat cagagaagaa aggaatggca agtattccat agaagagtac 2761 ctacaggaca gagacaagta ctatgaggag gtggctattg ccagggcaac cgaagaagac 2821 ttctgtgaag aagaagaggc caaaatccgg cagagaattt tcagaccaac aaggaagcaa 2881 cgcaaagaag agagggcctc tctcggcttg gtcacaggct ctgaaattag gaagagaaac 2941 ccagaagact ttaagcccaa gggaaagctg tgggctgatg atgacagaag tgttgactac 3001 aatgagaaac tcaactttga ggccccgcca agcatctggt cgcggatagt caactttggt 3061 tcaggttggg gcttctgggt ctcccccagt ctattcataa catcaaccca tgtcataccc 3121 cagggtgcaa aagagttctt cggagtctct atcaaacaaa tccagataca caaatcaggt 3181 gaattctgtc gattgagatt cccaaaacca atcagaactg atgtgacggg catgattcta 3241 gaagaaggtg cgcccgaagg gaccgtggcc acactactca tcaagagacc aactggagag 3301 ctcatgcctc tggcagccag aatgggaacc catgcaacca tgaagattca ggggcgcaca 3361 gttggaggac aaatgggtat gctcctgaca ggatccaacg ccaagagcat ggacctaggc 3421 acaacaccag gtgactgcgg ctgtccctac atctacaaga gagggaatga ctacgtggtc 3481 ataggggtcc acacggccgc tgcccgtgga ggaaacactg tcatatgtgc cacccagggg 3541 agtgagggag aagccacact tgaaggaggt gaaaacaaag gaacatactg cggtgcacca 3601 atcttgggcc cagggagtgc tccaaaactc agcaccaaga ctaagttttg gagatcatcc 3661 acaacaccac tcccgcctgg tacctacgaa ccagcctacc tcggcggcaa agatcccaga 3721 gtcaaaggtg gtccttcatt gcaacaagtt atgagggacc agctaaagcc attcacagaa 3781 cccagaggta aaccaccaaa accaaatgtg ttggaagctg ccaagaaaac catcatcaac 3841 gttcttgagc aaacaattga cccacctcaa aaatggtcat tcgcgcaagc ttgcgcatcc 3901 cttgacaaaa ccacctccag cggccatccg caccatatgc ggaaaaacga ttgttggaat 3961 ggggagtcct tcacaggaag attggcagat caggcctcca aggccaacct aatgtttgaa 4021 gagggaaaga acatgactcc agtctacaca ggtgcactta aagatgaatt ggtaaagact 4081 gacaaaattt atggtaagat caagaagagg cttctgtggg gctcagactt ggcgaccatg 4141 atacggtgcg cccgagcttt tggaggtctt atggatgaac tcaaggcaca ctgtgtcacc 4201 cttcctgtca gagttggtat gaacatgaat gaggatggcc ccatcatctt tgagaaacac 4261 tccagatata aatatcacta tgatgctgat tattcccggt gggactcgac acaacaaagg 4321 gatgtgctgg cagcagcact agaaattatg gttaaattct ctccagaacc acacctggct 4381 caggtagttg cagaagacct cctctccccc agtgtaatgg atgtaggtga ctttcaaata 4441 tcaataagtg agggactccc ctctggggtg ccttgcacct cccagtggaa ctccatcgcc 4501 cactggctcc tcactctttg tgcactctct gaagtcacgg acctgtcccc tgacatcatc 4561 caggccaact cccttttctc cttctatggt gatgatgaga ttgtgagcac agacataaag 4621 ttggacccag agaagctgac agcaaaactc aaggagtacg ggctgaaacc aacccgtccc 4681 gacaaaactg aaggacccct tgttatctct gaagatctgg atggcctgac attcctccgg 4741 aggactgtga cccgtgaccc agctggttgg tttggaaaat tggaacaaag ctcaattctc 4801 aggcaaatgt actggactag gggtcccaac catgaagatc catctgaaac aatgatacca 4861 cactcccaaa gacccataca attgatgtcc ttgctgggcg aggctgcact ccacggccca 4921 gcattttaca gcaaaattag taaattggtc attgcagagt tgaaggaagg tggcatggat 4981 ttttacgtgc ccagacaaga gccaatgttc agatggatga gattctcaga tctgagcacg 5041 tgggagggcg atcgcaatct ggctcccagc tttgtgaatg aagatggcgt cgaatgacgc 5101 cgctccatct aatgatggtg ccacgggcct cgtcccagag gtcaacaacg agacccttcc 5161 tctggaaccg gtagcgggtg cagctattgc cgcgcctgtt actggccaaa ataatataat 5221 tgatccctgg attagaacaa attttgtaca agcacccaat ggggagttca cagtctcacc 5281 cagaaactct cctggagaaa ttcttctaaa tttggaattg ggtcctgatt taaatccata 5341 tctggcacat ttatctagaa tgtataatgg gtacgctggt ggcgtagaag ttcaagtcct 5401 ccttgcaggg aatgcgttca ctgcaggaaa gattctcttc gctgccgtac caccaaattt 5461 cccagttgaa ttcttgagtc ctgcacaaat caccatgttg ccacatttaa tagttgatgt 5521 tagaaccctt gaacccatca tgataccact ccctgatgtt aggaacacct tcttccatta 5581 caataatcaa cctaccaatc gcatgcgatt ggtagccatg ttgtacaccc ccctgagatc 5641 taatggttct ggtgatgatg ttttcacagt gtcatgtaga gtgctaacta gacccacccc 5701 agattttgag ttcacatatt tggtcccccc ttcggtagag tctaagacta aacccttttc 5761 tctgcccata ctaaccatct ctgaattgac caattcaaga tttcctgtac cggtggattc 5821 attgttcaca gcccaaaaca ataatcttaa tgttcaatgt caaaatggtc gctgcacatt 5881 agatggtgag ttgcagggaa ccactcagtt gcaaccatca ggcatctgcg cctttagagg 5941 caaaataacg gcagatgtac gtccaaacca cgatgacaga tggcatatgc aattgacaaa 6001 cctcaatgga acccccttcg acccaacaga ggatgtgcca gctccactgg gcaccccaga 6061 tttcacaggc cttctcttcg gagtggcaag ccaaagaaat gttcaaccta acccaaacac 6121 caccagggca catgaagccg tgatatccac aaccagttca cagtttgtgc caaaattagg 6181 atcaatcaac tttggtagca caagtgaaga tttcattgtg ggccagccca caaaatttac 6241 accagttggc atcaagattg aggatggaca tgcatttgat caatggaccc tacccaggta 6301 ttcaggccat ttaactctca atatgaatct tgccccacct gttgctccaa atttccctgg 6361 tgaacaatta ctcttcttta ggtcaaatgt cccctgtgcc ggcggcatta gcgatggtgt 6421 catcgattgc ttgttgcctc aggagtggat acagcacttc taccaggagt ctgctccctc 6481 ccagtccgat gtggccctga tcagatacgt caaccccgac acgggccgca cacttttcga 6541 ggcgaaactc catagaacag gctacatcac tgttgctcat tcaggtgatt atccccttgt 6601 tgtcccctcc aatggatact ttagatttga ttcttgggtg aaccaatttt actcacttgc 6661 ccccatggga accgggaatg ggcgcagacg ggtgcagtaa tggcaggagc ttttatagca 6721 ggtctagcag gtgacatgct caccaacaca gttggctcat tggcgaacgc cggggccaat 6781 gccatcactc aaaagataga atttgaaaac aacaaacagc tccaatctgc ctccttccaa 6841 catgacaaag acatgctcca agcacaagtg gctgccacca agcagttaca ggctgatatg 6901 atcgccatca agcaggggat actgaccgcg ggcggctttt cccctactga tgcggcgaga 6961 ggagcagtgg gtgcacccat gaccaaagtc ctcgactggt ctggtactcg ttactgggct 7021 ccaaattcca cgaggacaac aggttactca gggcagttta catcagcacc agtgcacatg 7081 cctacaaaaa caattcagcc cactcctgtt aaaaggactc agcctctttc ttcctcttca 7141 ggtagtatct atagtctttc aacacagagc actgccttga ccaagccctc ttcaggctct 7201 tcttctgttt cttctgcttc tacacaatct acaaaattga gttcagtttc ttcaatggat 7261 agaacagcaa attgggtaaa tcagcaaaga agcctcagcc ccttcatgag tggtgcactc 7321 aacatatctc atgtaacacc tccatcgagc agggcttcga gttcggggac agtctcaact 7381 gtacccaaag aagttttgga ctcctggaca cctgcattca acacacacag acagccgctc 7441 ttcgcacacc tcagagtgag gggggagtca cgtgtttagt gaaaagaatc aattagtttt 7501 aattaaattt tgattggatt taattttaat tggatctttt aaaaaaaaaa //