Typing tool
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Typing tool
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Complete norovirus genomes
| KT346356 | GII.17 | |
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| GII.P17 |
ORF1: 1..822
ORF2: 803..2425
ORF3: 2425..3204
LOCUS KT346356 3266 bp RNA linear VRL 08-SEP-2015
DEFINITION Norovirus Hu/GII.P17_GII.17/PR668/2015/ITA RNA-dependent RNA
polymerase (ORF1) gene, partial cds; and major capsid protein
(ORF2) and minor capsid protein (ORF3) genes, complete cds.
ACCESSION KT346356
VERSION KT346356.1
KEYWORDS .
SOURCE Norovirus Hu/GII.P17_GII.17/PR668/2015/ITA
ORGANISM Norovirus Hu/GII.P17_GII.17/PR668/2015/ITA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3266)
AUTHORS Medici,M.C., Tummolo,F. and Martella,V.
TITLE Genomic analysis of the emerging GII.17 human norovirus, Italy,
2015
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3266)
AUTHORS Medici,M.C., Tummolo,F. and Martella,V.
TITLE Direct Submission
JOURNAL Submitted (27-JUL-2015) Unit of Microbiology and Virology,
Departement of Clinical and Experimental Medicine, University of
Parma, Viale A. Gramsci, 14, Parma, Parma 43126, Italy
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3266
/organism="Norovirus Hu/GII.P17_GII.17/PR668/2015/ITA"
/mol_type="genomic RNA"
/strain="PR668/2015/ITA"
/isolation_source="stools"
/host="Homo sapiens"
/db_xref="taxon:1711929"
/country="Italy"
/collection_date="2015"
/collected_by="Medici MC"
/note="genotype: GII.P17_GII.17"
gene <1..822
/gene="ORF1"
CDS <1..822
/gene="ORF1"
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="ALD09617.1"
/translation="HYDADYSRWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLS
PSVVDVGDFKIAINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYS
FYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTR
DPAGWFGKLDQNSILRQLYWTRGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFY
SKVSKLVISELKEGGMDFYVPRQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 803..2425
/gene="ORF2"
CDS 803..2425
/gene="ORF2"
/codon_start=1
/product="major capsid protein"
/protein_id="ALD09618.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
ARNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN
DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 2425..3204
/gene="ORF3"
CDS 2425..3204
/gene="ORF3"
/codon_start=1
/product="minor capsid protein"
/protein_id="ALD09619.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVKATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNASQSKPVKPRSLAPSSSSSSVYSTYTQST
HLISGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 cactatgatg cagactactc ccgctgggac tccacacagc agcgggcagt gctggaagcg
61 gcacttgaaa tcatggtgag attttctgct gagccacagc tggcacaaat agtggcagag
121 gacctgctgt caccaagtgt ggttgatgtg ggcgatttca aaatcgctat caatgaaggc
181 ctaccatctg gcgtgccttg cacctcacaa tggaattcta ttgcccactg gttacttacc
241 ttgtgtgccc tttctgaagt gacaggatta ggtcctgaca tcatacaagc taactccatg
301 tactctttct atggtgatga tgagattgtg agcacagaca taaaattgga cccagagaaa
361 ttgaccgcaa agctcaaaga atatggcctt aaacccactc ggcccgacaa aactgagggg
421 ccgttggtga ttagtgaaga cctgaatggg ttgactttcc tccgccgaac agtcacccgt
481 gatccagcag gttggtttgg aaagttggac caaaactcca tcctcaggca gttgtactgg
541 acaagaggac ccaaccatga agaccccagt gagaccatga taccacacgc acaaagacct
601 gtgcagctca tggcactact aggagaatcc tccctacatg gaccctcatt ttacagcaag
661 gttagcaaat tagtcatatc tgaacttaaa gagggaggaa tggattttta tgtgcccaga
721 caagagtcaa tgttcagatg gatgaggttc tcagatctaa gcacatggga gggcgatcgc
781 aatctggctc ccagttttgt gaatgaagat ggcgtcgaat gacgccgctc catctaatga
841 tggtgctgct ggtctcgtac cagagggcaa caacgagacc cttcccctag aaccagttgc
901 gggcgcagct atagccgcac ccgtcactgg ccaaaataac ataattgacc cctggattag
961 aacaaatttt gtgcaagcac caaatggaga gttcacagtg tcacccagaa actctcctgg
1021 agaaatttta ttaaacttag agttgggccc tgatttgaac ccttatttgg ctcatttgtc
1081 aaggatgtac aatgggtatg ctggtggagt ggaagttcag gttctcctgg cagggaacgc
1141 gttcactgcc ggaaagatcc tcttcgccgc cgtcccgcca aatttcccag tggaattctt
1201 aagcccagcc cagatcacaa tgctccctca tttaatagta gatgttagga ctcttgaacc
1261 aattatgatc ccactccctg atgctaggaa tacattcttc cattatagta accagcctaa
1321 cagccgcatg agattagtgg ctatgctcta caccccactc agatctaatg gctcaggtga
1381 tgatgtcttt actgtctctt gcagggtttt gactaggcct actcctgatt ttgagttcac
1441 ttatttagtg ccaccttctg ttgaatctaa aactaagcct ttttctttac ctattttaac
1501 cctttctgag ctcacaaatt cgaggttccc agtccccatc gattcgcttt tcaccgccca
1561 gaataatgtg ttgcaggtgc agtgtcaaaa tggcaggtgt acacttgatg gtgagttaca
1621 aggcacaacc cagttgctcc catctggcat ctgtgcattc agaggacggg tgacagcaca
1681 aattaaccaa cgtgacaggt ggcacatgca actgcaaaac ctcaatggta caacatatga
1741 cccaactgat gatgtgccag ccccgctggg tacacctgac ttcaagggcg tcgtgtttgg
1801 gatggtaagc caaagaaatg tgggtaatga tgcgcctggc tcaaccagag cccaacaggc
1861 gtgggtttca acctatagcc cccaatttgt ccccaaatta ggttctgtca atcttagaat
1921 tagtgataat gatgatttcc aattccagcc gacaaaattc acaccagtgg gcgtcaatga
1981 tgacgatgat ggccacccgt tcagacaatg ggaattacca aactattcag gggagcttac
2041 cttgaatatg aatcttgccc ccccagttgc tccaaatttt cctggtgaac aattgttatt
2101 cttcagatct ttcgtgccat gctcaggagg ttacaaccaa ggtattatag attgtcttat
2161 tccccaagaa tggatccaac acttctatca ggaatcagca ccctcccagt cagacgtggc
2221 cctaatcagg tatgtcaacc ctgatacggg acgtacactg tttgaagcaa aattgcacag
2281 atctggttac attactgtgg ctcactctgg agactatcct cttgttgttc cggctaatgg
2341 acactttaga tttgattctt gggtaaatca gttttactca ctcgccccaa tgggaactgg
2401 gaatgggcga aggagggctc agtaatggct ggggctttca ttgcaggatt ggcaggcgac
2461 atgctcacgt catctgtggg ctcccttgtg aacgcagggg caaacgccat caaccaaaag
2521 atagactttg aaaacaacaa acaactccag tctgcttcct ttcagcatga taaagagatg
2581 ctccaagcgc aggtgaaggc aaccaagcag ctgcaatctg aaatgatagc cctaaaacag
2641 ggggttttgg ccgcaggcgg cttttccccc actgatgcag caaggggagc cattggtgca
2701 cccatgacaa aggtgcttga ctggtctggc actcgatact gggcgcccaa ctccacaaag
2761 acaactggtt attcgggaca attcacctct tcacctgtgc acatgtctag cccaaatgct
2821 tcacaatcaa aacctgtaaa gcctaggtct ctagcccctt cctcttcttc tagcagtgtc
2881 tatagtacgt acactcaatc tactcattta atatctggct cttctagtaa tgcttcttct
2941 gcctctacaa aattgacaaa tttaagctct ggctcctctc aaaacagaac agcagagtgg
3001 gtaaatcaac agagaagtct tagccctttc atgagtggcg cacttaacat ctcacatgtc
3061 acgccaccct caagtagggc ttccagttct gggacggtct cgaccgtgcc caaggaagtt
3121 ttggactcct ggacgtctgc gtttaacaca cacagacaac cgctcttcgc acacctcaga
3181 gtgagggggg agtcacgtgt ttagtgaaaa gaaataattg gctataatgt gatttctttc
3241 taaaatttgg ctaatttgag tctttt
//