Typing tool
|
Complete norovirus genomes
KT326182 | GII.17 | ||
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GII.P17 |
ORF1: 1..5053 ORF2: 5034..6656 ORF3: 6656..7435LOCUS KT326182 7506 bp RNA linear VRL 08-MAR-2016 DEFINITION Norovirus Hu/GII.17/CUHK-NS-667/HKG/2015 nonstructural polyprotein (ORF1) gene, partial cds; and viral protein 1 (VP1) and viral protein 2 (VP2) genes, complete cds. ACCESSION KT326182 VERSION KT326182.1 KEYWORDS . SOURCE Norovirus Hu/GII.17/CUHK-NS-667/HKG/2015 ORGANISM Norovirus Hu/GII.17/CUHK-NS-667/HKG/2015 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7506) AUTHORS Chan,M.C., Lee,N., Hung,T.N., Kwok,K., Cheung,K., Tin,E.K., Lai,R.W., Nelson,E.A., Leung,T.F. and Chan,P.K. TITLE Rapid emergence and predominance of a broadly recognizing and fast-evolving norovirus GII.17 variant in late 2014 JOURNAL Nat Commun 6, 10061 (2015) PUBMED 26625712 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7506) AUTHORS Chan,M.C.W., Hung,T.T.N. and Chan,P.K.S. TITLE Direct Submission JOURNAL Submitted (22-JUL-2015) Department of Microbiology, The Chinese University of Hong Kong, CUHK, Shatin 852, Hong Kong COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7506 /organism="Norovirus Hu/GII.17/CUHK-NS-667/HKG/2015" /mol_type="genomic RNA" /strain="Hu/GII.17/CUHK-NS-667/HKG/2015" /isolate="CUHK-NS-667" /host="Homo sapiens" /db_xref="taxon:1760930" /country="Hong Kong" /collection_date="2015" /note="genotype: GII.17" gene <1..5053 /gene="ORF1" CDS <1..5053 /gene="ORF1" /note="contains RNA-dependent RNA polymerase; RdRp" /codon_start=2 /product="nonstructural polyprotein" /protein_id="ALP48598.1" /translation="DKEKSSSDSLFANMSVTFKKALGARSKQPPPGETKQIQKPPRPP TPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQPDAQNTAYSVPPLSQREV GEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAKIEITPLSLYWRVV YTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTGFFKP YQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKLRPLNILNILATCDWT FVGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLAVELVPVVMGGIGLV LGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEANELAMVRAIED AVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIVGTINALLA RIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVASTLSGDQRIGL VPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNCDRIENKGKVF DSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFPGQPDMWKDHF RPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARASGLLHERMDEFELQGS DLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDELKQAIKNISIKKCQ IVYNGRTYTMESDGRGKVVVEKVQNATVQTNNELVGALHHLRSARIRYYVKCFQEAIY SLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCPKPRDEDDLTIDSRDI KVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYE ELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNPDDFKPK GKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITSTHVIPKGITE AFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSILIKRTTGELMP LAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDLVVI GVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPKLSTKTKFWRS SNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPNPNVLESAKKT IINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFTGKLADQASKA NLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCARAFGGLMDE FKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLEAALEIMV RFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQWNSIAHWLLTLCAL SEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPL VISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPSETMIPHAQRP VQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQEPMFRWMRFSDLSTWEG DRNLAPSFVNEDGVE" gene 5034..6656 /gene="VP1" CDS 5034..6656 /gene="VP1" /codon_start=1 /product="viral protein 1" /protein_id="ALP48599.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ" gene 6656..7435 /gene="VP2" CDS 6656..7435 /gene="VP2" /codon_start=1 /product="viral protein 2" /protein_id="ALP48600.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST HSTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV" ORIGIN 1 cgacaaggaa aaatcttcaa gtgacagctt gtttgctaac atgtctgtca cttttaagaa 61 agccctcggg gcgcggtcta aacaaccgcc cccgggagaa acaaaacaaa tacaaaaacc 121 accaaggcca ccgacaccgg aattggtgaa gagaatacct ccacccccac ccaatggcga 181 ggatgaacca gggatagtgt acaaggtggg agagggtgtg tctgggctgc ccgacctaac 241 aactgtggta caacctgacg cacaaaacac agcttatagt gttcccccac ttagccagag 301 agaagtcggc gaagctaaag aaccgctgcc tggctccatt ctggaaatgt gggatggtga 361 gatctaccac tatgggctgt atgttgagcg ggggcatgtg ctcggagtac acaaaccacc 421 tgctgcaata agccttgcca aaattgaaat aacaccgctg tctctctact ggagagtggt 481 ctacactccc cagtatttga tagatccagg aactcttaaa aacttgagtg gagagacttt 541 cccatacacg gcctttgaca acaactgtta tgccttctgt tgttgggtcc tagacctcaa 601 cgactcctgg cttagcagga gaatgatcca aagaacaact ggattcttca aaccttatca 661 ggattggaac agaaaaccct taccaaccat ggatgaaccg aaaatcaaga aggccgcgaa 721 tgctgtccta tgcgctctct cctcactctt cactagaccc attaaggaca tcattggaaa 781 gcttagacca ctgaacattc ttaatatact ggcaacctgc gattggactt ttgtaggcat 841 agtggaatcc ttgatccttc ttgctgaact ctttggggtg ttctggacac ccccagatgt 901 gtctgcgatg attgctccct tactcggtga ctacgagatg caaggccccg aagacctggc 961 cgtggaactt gtgcccgtgg tgatgggagg aataggtttg gtgttaggat tcaccaaaga 1021 aaagatcggc aagatgcttt catcagctgc gaccacactt agggcctgca aggatctagg 1081 atcttatgga ttggagatac tcaaattggt catgaaatgg ttcttcccca agaaggagga 1141 ggctaacgaa ctagccatgg tgagggccat tgaggatgca gtcctggatt tggaggcaat 1201 agaaaacaat cacatgacca cccttctcaa ggataaagac agcctggcca catacatgag 1261 gactcttgac ttggaagaag agaaagcaag gaaactgtca accaaatcgg cgtcacctga 1321 catcgtgggt acaataaacg cattattggc taggatagca gccgccaggt cactggtcca 1381 caaggctaag gaggagctct cgagcagaca gagacctgtt gttgtaatga tatcaggtag 1441 accaggtata ggaaagaccc atctggccag agagctagcc aagaaagttg catcaacact 1501 gtcaggcgac caaaggattg gactggtacc tagaaatggc gtcgaccatt gggacgccta 1561 caagggagaa agggtggtcc tgtgggatga ttatggtatg agcaacccta tacaggacgc 1621 actgaggctc caagaattgg ctgacacctg tcctctgacc ctaaattgtg ataggattga 1681 aaacaaagga aaagtgttcg acagtgatgc cataattata acaaccaacc ttgcaaaccc 1741 agcaccacta gactatgtca actttgaggc ctgctctaga cgcatagact tcttggtgta 1801 tgcagacgca cctgacattg agaaggctaa gcgtgacttc cctggccaac cagatatgtg 1861 gaaagaccat ttcagaccag acttctcaca cattaaactt cagctggcac cacagggagg 1921 ttttgacaaa aatggcaaca ccccacatgg caaaggtgtg gtgaagtccc tgacgattgg 1981 ttctctgatc gccagggcct ccggcttgct ccacgagaga atggatgaat tcgagctcca 2041 aggctctgac ctgccaacct tcaattttga ccgcaacaaa gtcgccgcct tcagacaatt 2101 agcagctgaa aacaaatatg gtcttatgga cacattgagg gtcggcaacc aactgaaaag 2161 tgttaagacc ctggatgagc tgaagcaggc cataaagaac atcagtatca agaagtgtca 2221 gatagtgtat aatggacgca cctataccat ggaatctgat gggaggggta aggttgtggt 2281 tgaaaaggta caaaacgcaa cagttcaaac caacaatgaa cttgtagggg cgctccacca 2341 cctgagatct gcaaggataa gatactatgt taaatgtttc caagaagcca tttactctct 2401 actccaaatc gctggtgcag ccttcgtcac ctcacgcatc gtgaggcgca tgaacatatc 2461 aaacctctgg tcgaagccac ccatcgagga gggtgatgag cctgaagaca gaggaggatg 2521 ccccaagccc agggatgaag atgacctcac tattgactct agagacatta aagtggaagg 2581 gaagaagggc aagaacaagt ctggccgggg caagaaacac acagccttct cttccaaggg 2641 cctcagtgat gaagagtacg atgagtataa gagaatcaga gaggagagga atggcaaata 2701 ctcaatagag gaatacctcc aagataggga cagatactat gaagagcttg ccattgctaa 2761 ggccactgag gaggacttct gtgaggagga ggagatcaaa atccgccaga gaatcttccg 2821 acccaccagg aagcagcgga aagaggaaag ggccacgctt gggcttgtca caggatcgga 2881 aatcagaaag aggaatccag atgactttaa accaaaagga aaattgtggg ctgatgacaa 2941 caggagcgtg gattacaatg agaggataga ttttgaggct cccccgagtg tttggtctag 3001 gatagtcaac tttggcacag gctggggatt ctgggtttct ccaagtctct ttataacttc 3061 aacacacgtc ataccaaaag gaatcactga ggcctttgga gtgcctataa accaaatcca 3121 aattcacaaa tctggagaat tttgccgctt gcggtttcca aagccaatta gaccagacgt 3181 gagtgggatg atcttggaag agggcgcccc tgaaggcact gttgtgtcta ttctcatcaa 3241 aaggacaaca ggggagctga tgcctcttgc agtcagaatg gggactcatg ccacaatgaa 3301 aatccaaggt agaacggtgg gtggtcagat gggtatgctt ctcactggct caaatgctaa 3361 aagcatggat ctaggcacaa cgccaggtga ctgcggatgt ccatacatat acaagagggg 3421 caatgacctt gtggtcattg gggtgcacac tgcagcagct cgtggaggca acacggtcat 3481 atgtgccaca cagggaagtg aaggtgaagc cactcttgaa ggaggtgaca ataagggtac 3541 ctattgtgga gcccccattt tgggacctgg caatgcacca aaattgagca caaagacaaa 3601 attctggaga tcctctaacg caccgcttcc cccaggtact tatgaaccag cataccttgg 3661 tgggagagac ccgcgcgtga agggaggccc atctctgcaa caagttatga gagaccaact 3721 taaacctttt acagagccca gagggaagcc accaaaccca aatgtcttag agtcagcaaa 3781 gaagactatc atcaatgttc tggaacaaac cattgacccc cctcaaaagt ggtcatatgc 3841 ccaagcttgt gcatccctcg acaagacaac ctccagtgga tacccgcacc acgtccggaa 3901 gaatgactat tggagtggcg aatccttcac aggaaaactt gcagatcagg cttcaaaagc 3961 aaatctcatg tatgaggaag gcaagcacat gcaaccagtt tacaccgcag cactcaaaga 4021 cgagctcgtg aaaactgaca aaatttatgg caaaatcaag aaaagactcc tgtggggttc 4081 tgacctctcc acaatgattc gatgcgccag agcatttggt ggtctcatgg atgaattcaa 4141 agcaaattgt attacactcc ctatcagagt tggtatgaat atgaatgaag atggtcccat 4201 aatatttgag aaacactcca ggtacaggta ccactatgat gctgattact cccgctggga 4261 ctccacacag cagcgggcag tgctggaagc ggcacttgaa atcatggtga gattttctgc 4321 cgagccacag ctggcacaaa tagtggcaga ggacctgctg tcaccaagtg tggttgatgt 4381 gggcgatttc aaaatcgcta tcaatgaagg cctaccatct ggcgtgcctt gcacctcaca 4441 atggaattct attgcccact ggttacttac cttgtgtgcc ctttctgaag tgacaggatt 4501 aggtcctgac atcatacaag ctaactccat gtactctttc tatggtgatg atgagattgt 4561 gagcacagac ataaaattgg acccagagaa attgaccgca aagctcaaag aatatggcct 4621 caaacccact cggcccgaca aaactgaggg gccgttggtg attagtgagg acctgaatgg 4681 gttgactttc ctccgccgaa cagtcacccg tgatccagca ggttggtttg gaaagttgga 4741 ccaaaattcc atcctcaggc agttgtactg gacaagagga cccaaccatg aagaccccag 4801 tgagaccatg ataccacacg cacaaagacc tgtgcagctc atggcactac taggagaatc 4861 ctccctacat ggaccctcat tttacagcaa ggttagcaaa ttagtcatat ctgaacttaa 4921 agagggagga atggattttt atgtgcccag acaagagcca atgttcagat ggatgaggtt 4981 ctcagatcta agcacatggg agggcgatcg caatctggct cccagttttg tgaatgaaga 5041 tggcgtcgaa tgacgccgct ccatctaatg atggtgctgc tggtctcgta ccagagggca 5101 acaacgagac ccttccccta gaaccagttg cgggcgcagc tatagccgca cccgtcactg 5161 gccaaaataa tataattgac ccctggatta gaacaaattt tgtgcaagca ccaaatggag 5221 agttcacagt gtcacccaga aactctcccg gagaaatttt attaaattta gagttgggcc 5281 ctgatttgaa cccttatttg gctcatttgt caaggatgta caatgggtat gctggtggag 5341 tggaagttca ggttctcctg gcagggaacg cgttcactgc cggaaagatc ctcttcgccg 5401 ccgtcccgcc aaatttccca gtggaattct taagcccagc ccagatcaca atgctcccac 5461 atttaatagt agatgttagg actcttgaac caattatgat cccactccct gatgttagga 5521 atacattctt ccattatagt aaccagccta acagccgcat gagattagtg gctatgctct 5581 ataccccact cagatctaat ggctcaggtg atgatgtctt tactgtctct tgcagggttt 5641 tgactaggcc tactcctgat tttgagttca cttatttagt gccaccttct gttgaatcta 5701 aaactaagcc tttttcctta cctattttaa ccctttctga gctcacaaat tcgaggtttc 5761 cagtccccat cgattcgctt ttcaccgccc agaataatgt gttgcaggtg cagtgtcaaa 5821 atggcaggtg tacacttgat ggtgagttac aaggcacaac ccagttgctc ccaactggca 5881 tctgtgcatt cagaggacgg gtgacagcac aaattaacca acgtgacagg tggcacatgc 5941 aactgcaaaa cctcaatggt acaacatatg acccaactga tgatgtgcca gccccgctgg 6001 gtacacctga cttcaagggc gtcgtgtttg ggatggtaag ccaaagaaat gtgggtaatg 6061 atgcgcctgg ctcaaccaga gcccaacagg cgtgggtttc aacctatagc ccccaatttg 6121 tccccaaatt aggttctgtc aatcttagaa ttagtgataa tgatgatttc caattccagc 6181 cgacaaaatt cacaccagtg ggcgtcaatg atgacgatga tggccacccg ttcagacagt 6241 gggaactacc aaactattca ggggagctta ccttgaatat gaatcttgcc cccccagttg 6301 ctccaaattt tcctggtgaa caattgttat tcttcaggtc tttcgtgcca tgctcaggag 6361 gttacaacca aggtattata gattgtctta ttccccaaga atggatccaa cacttctatc 6421 aggaatcagc accctcccag tcagacgtgg ccctaatcag gtatgtcaac cccgatacgg 6481 gacgtacact gtttgaagca aaattgcaca ggtctggtta cattactgtg gctcactctg 6541 gagactatcc tcttgttgtt ccggctaatg gatactttag gtttgattct tgggtaaatc 6601 agttttactc actcgcccca atgggaactg ggaatgggcg aaggagggct cagtaatggc 6661 tggggctttc attgcaggat tggcaggcga catgctcacg tcatctgtgg gctcccttgt 6721 gaacgcaggg gcaaacgcca tcaaccaaaa gatagacttt gaaaacaaca aacaactcca 6781 gtctgcttcc tttcagcatg ataaagagat gctccaagcg caggtgaggg caaccaagca 6841 gctgcaatct gaaatgatag ccctaaaaca gggggttttg gccgcaggcg gcttttcccc 6901 cactgatgca gcaaggggat ccattggtgc acccatgaca aaggtgcttg actggtctgg 6961 cactcgatac tgggcgccca attccacaaa gacaactggc tattcgggac aattcacctc 7021 ttcacctgtg catatgtcta gcccaaatgc tccacaatca aaacctgcaa agcctaggtc 7081 tctagctcct tcctcttctt ctagcagtgt ctatagtatg tatactcaat ctactcattc 7141 aacatctggc tcttctagta atgcttcttc tgcctccaca aaattgacaa atttaagctc 7201 tggctcctct caaaacagaa cagcagagtg ggtaaatcaa cagagaagtc ttagcccttt 7261 catgagtggc gcacttaaca tctcacatgt cacgccaccc tcaagtaggg cttccagttc 7321 tgggacggtc tcgaccgtgc ccaaggaagt tttggactcc tggacgtctg cgtttaacac 7381 acacagacag ccgctcttcg cacacctcag agtgaggggg gagtcacgtg tttagtgaaa 7441 agaaataatt ggctataatg tgatttcttt ctaaatttgg ctaatttgta tcttttaaaa 7501 aaaaaa //