Typing tool
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Typing tool
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Complete norovirus genomes
| KT326182 | GII.17 | |
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| GII.P17 |
ORF1: 1..5053
ORF2: 5034..6656
ORF3: 6656..7435
LOCUS KT326182 7506 bp RNA linear VRL 08-MAR-2016
DEFINITION Norovirus Hu/GII.17/CUHK-NS-667/HKG/2015 nonstructural polyprotein
(ORF1) gene, partial cds; and viral protein 1 (VP1) and viral
protein 2 (VP2) genes, complete cds.
ACCESSION KT326182
VERSION KT326182.1
KEYWORDS .
SOURCE Norovirus Hu/GII.17/CUHK-NS-667/HKG/2015
ORGANISM Norovirus Hu/GII.17/CUHK-NS-667/HKG/2015
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7506)
AUTHORS Chan,M.C., Lee,N., Hung,T.N., Kwok,K., Cheung,K., Tin,E.K.,
Lai,R.W., Nelson,E.A., Leung,T.F. and Chan,P.K.
TITLE Rapid emergence and predominance of a broadly recognizing and
fast-evolving norovirus GII.17 variant in late 2014
JOURNAL Nat Commun 6, 10061 (2015)
PUBMED 26625712
REFERENCE 2 (bases 1 to 7506)
AUTHORS Chan,M.C.W., Hung,T.T.N. and Chan,P.K.S.
TITLE Direct Submission
JOURNAL Submitted (22-JUL-2015) Department of Microbiology, The Chinese
University of Hong Kong, CUHK, Shatin 852, Hong Kong
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7506
/organism="Norovirus Hu/GII.17/CUHK-NS-667/HKG/2015"
/mol_type="genomic RNA"
/strain="Hu/GII.17/CUHK-NS-667/HKG/2015"
/isolate="CUHK-NS-667"
/host="Homo sapiens"
/db_xref="taxon:1760930"
/geo_loc_name="Hong Kong"
/collection_date="2015"
/note="genotype: GII.17"
gene <1..5053
/gene="ORF1"
CDS <1..5053
/gene="ORF1"
/note="contains RNA-dependent RNA polymerase; RdRp"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="ALP48598.1"
/translation="DKEKSSSDSLFANMSVTFKKALGARSKQPPPGETKQIQKPPRPP
TPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQPDAQNTAYSVPPLSQREV
GEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAKIEITPLSLYWRVV
YTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTGFFKP
YQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKLRPLNILNILATCDWT
FVGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLAVELVPVVMGGIGLV
LGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEANELAMVRAIED
AVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIVGTINALLA
RIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVASTLSGDQRIGL
VPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNCDRIENKGKVF
DSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFPGQPDMWKDHF
RPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARASGLLHERMDEFELQGS
DLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDELKQAIKNISIKKCQ
IVYNGRTYTMESDGRGKVVVEKVQNATVQTNNELVGALHHLRSARIRYYVKCFQEAIY
SLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCPKPRDEDDLTIDSRDI
KVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYE
ELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNPDDFKPK
GKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITSTHVIPKGITE
AFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSILIKRTTGELMP
LAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDLVVI
GVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPKLSTKTKFWRS
SNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPNPNVLESAKKT
IINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFTGKLADQASKA
NLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCARAFGGLMDE
FKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLEAALEIMV
RFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQWNSIAHWLLTLCAL
SEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPL
VISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPSETMIPHAQRP
VQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQEPMFRWMRFSDLSTWEG
DRNLAPSFVNEDGVE"
gene 5034..6656
/gene="VP1"
CDS 5034..6656
/gene="VP1"
/codon_start=1
/product="viral protein 1"
/protein_id="ALP48599.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN
DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6656..7435
/gene="VP2"
CDS 6656..7435
/gene="VP2"
/codon_start=1
/product="viral protein 2"
/protein_id="ALP48600.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST
HSTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 cgacaaggaa aaatcttcaa gtgacagctt gtttgctaac atgtctgtca cttttaagaa
61 agccctcggg gcgcggtcta aacaaccgcc cccgggagaa acaaaacaaa tacaaaaacc
121 accaaggcca ccgacaccgg aattggtgaa gagaatacct ccacccccac ccaatggcga
181 ggatgaacca gggatagtgt acaaggtggg agagggtgtg tctgggctgc ccgacctaac
241 aactgtggta caacctgacg cacaaaacac agcttatagt gttcccccac ttagccagag
301 agaagtcggc gaagctaaag aaccgctgcc tggctccatt ctggaaatgt gggatggtga
361 gatctaccac tatgggctgt atgttgagcg ggggcatgtg ctcggagtac acaaaccacc
421 tgctgcaata agccttgcca aaattgaaat aacaccgctg tctctctact ggagagtggt
481 ctacactccc cagtatttga tagatccagg aactcttaaa aacttgagtg gagagacttt
541 cccatacacg gcctttgaca acaactgtta tgccttctgt tgttgggtcc tagacctcaa
601 cgactcctgg cttagcagga gaatgatcca aagaacaact ggattcttca aaccttatca
661 ggattggaac agaaaaccct taccaaccat ggatgaaccg aaaatcaaga aggccgcgaa
721 tgctgtccta tgcgctctct cctcactctt cactagaccc attaaggaca tcattggaaa
781 gcttagacca ctgaacattc ttaatatact ggcaacctgc gattggactt ttgtaggcat
841 agtggaatcc ttgatccttc ttgctgaact ctttggggtg ttctggacac ccccagatgt
901 gtctgcgatg attgctccct tactcggtga ctacgagatg caaggccccg aagacctggc
961 cgtggaactt gtgcccgtgg tgatgggagg aataggtttg gtgttaggat tcaccaaaga
1021 aaagatcggc aagatgcttt catcagctgc gaccacactt agggcctgca aggatctagg
1081 atcttatgga ttggagatac tcaaattggt catgaaatgg ttcttcccca agaaggagga
1141 ggctaacgaa ctagccatgg tgagggccat tgaggatgca gtcctggatt tggaggcaat
1201 agaaaacaat cacatgacca cccttctcaa ggataaagac agcctggcca catacatgag
1261 gactcttgac ttggaagaag agaaagcaag gaaactgtca accaaatcgg cgtcacctga
1321 catcgtgggt acaataaacg cattattggc taggatagca gccgccaggt cactggtcca
1381 caaggctaag gaggagctct cgagcagaca gagacctgtt gttgtaatga tatcaggtag
1441 accaggtata ggaaagaccc atctggccag agagctagcc aagaaagttg catcaacact
1501 gtcaggcgac caaaggattg gactggtacc tagaaatggc gtcgaccatt gggacgccta
1561 caagggagaa agggtggtcc tgtgggatga ttatggtatg agcaacccta tacaggacgc
1621 actgaggctc caagaattgg ctgacacctg tcctctgacc ctaaattgtg ataggattga
1681 aaacaaagga aaagtgttcg acagtgatgc cataattata acaaccaacc ttgcaaaccc
1741 agcaccacta gactatgtca actttgaggc ctgctctaga cgcatagact tcttggtgta
1801 tgcagacgca cctgacattg agaaggctaa gcgtgacttc cctggccaac cagatatgtg
1861 gaaagaccat ttcagaccag acttctcaca cattaaactt cagctggcac cacagggagg
1921 ttttgacaaa aatggcaaca ccccacatgg caaaggtgtg gtgaagtccc tgacgattgg
1981 ttctctgatc gccagggcct ccggcttgct ccacgagaga atggatgaat tcgagctcca
2041 aggctctgac ctgccaacct tcaattttga ccgcaacaaa gtcgccgcct tcagacaatt
2101 agcagctgaa aacaaatatg gtcttatgga cacattgagg gtcggcaacc aactgaaaag
2161 tgttaagacc ctggatgagc tgaagcaggc cataaagaac atcagtatca agaagtgtca
2221 gatagtgtat aatggacgca cctataccat ggaatctgat gggaggggta aggttgtggt
2281 tgaaaaggta caaaacgcaa cagttcaaac caacaatgaa cttgtagggg cgctccacca
2341 cctgagatct gcaaggataa gatactatgt taaatgtttc caagaagcca tttactctct
2401 actccaaatc gctggtgcag ccttcgtcac ctcacgcatc gtgaggcgca tgaacatatc
2461 aaacctctgg tcgaagccac ccatcgagga gggtgatgag cctgaagaca gaggaggatg
2521 ccccaagccc agggatgaag atgacctcac tattgactct agagacatta aagtggaagg
2581 gaagaagggc aagaacaagt ctggccgggg caagaaacac acagccttct cttccaaggg
2641 cctcagtgat gaagagtacg atgagtataa gagaatcaga gaggagagga atggcaaata
2701 ctcaatagag gaatacctcc aagataggga cagatactat gaagagcttg ccattgctaa
2761 ggccactgag gaggacttct gtgaggagga ggagatcaaa atccgccaga gaatcttccg
2821 acccaccagg aagcagcgga aagaggaaag ggccacgctt gggcttgtca caggatcgga
2881 aatcagaaag aggaatccag atgactttaa accaaaagga aaattgtggg ctgatgacaa
2941 caggagcgtg gattacaatg agaggataga ttttgaggct cccccgagtg tttggtctag
3001 gatagtcaac tttggcacag gctggggatt ctgggtttct ccaagtctct ttataacttc
3061 aacacacgtc ataccaaaag gaatcactga ggcctttgga gtgcctataa accaaatcca
3121 aattcacaaa tctggagaat tttgccgctt gcggtttcca aagccaatta gaccagacgt
3181 gagtgggatg atcttggaag agggcgcccc tgaaggcact gttgtgtcta ttctcatcaa
3241 aaggacaaca ggggagctga tgcctcttgc agtcagaatg gggactcatg ccacaatgaa
3301 aatccaaggt agaacggtgg gtggtcagat gggtatgctt ctcactggct caaatgctaa
3361 aagcatggat ctaggcacaa cgccaggtga ctgcggatgt ccatacatat acaagagggg
3421 caatgacctt gtggtcattg gggtgcacac tgcagcagct cgtggaggca acacggtcat
3481 atgtgccaca cagggaagtg aaggtgaagc cactcttgaa ggaggtgaca ataagggtac
3541 ctattgtgga gcccccattt tgggacctgg caatgcacca aaattgagca caaagacaaa
3601 attctggaga tcctctaacg caccgcttcc cccaggtact tatgaaccag cataccttgg
3661 tgggagagac ccgcgcgtga agggaggccc atctctgcaa caagttatga gagaccaact
3721 taaacctttt acagagccca gagggaagcc accaaaccca aatgtcttag agtcagcaaa
3781 gaagactatc atcaatgttc tggaacaaac cattgacccc cctcaaaagt ggtcatatgc
3841 ccaagcttgt gcatccctcg acaagacaac ctccagtgga tacccgcacc acgtccggaa
3901 gaatgactat tggagtggcg aatccttcac aggaaaactt gcagatcagg cttcaaaagc
3961 aaatctcatg tatgaggaag gcaagcacat gcaaccagtt tacaccgcag cactcaaaga
4021 cgagctcgtg aaaactgaca aaatttatgg caaaatcaag aaaagactcc tgtggggttc
4081 tgacctctcc acaatgattc gatgcgccag agcatttggt ggtctcatgg atgaattcaa
4141 agcaaattgt attacactcc ctatcagagt tggtatgaat atgaatgaag atggtcccat
4201 aatatttgag aaacactcca ggtacaggta ccactatgat gctgattact cccgctggga
4261 ctccacacag cagcgggcag tgctggaagc ggcacttgaa atcatggtga gattttctgc
4321 cgagccacag ctggcacaaa tagtggcaga ggacctgctg tcaccaagtg tggttgatgt
4381 gggcgatttc aaaatcgcta tcaatgaagg cctaccatct ggcgtgcctt gcacctcaca
4441 atggaattct attgcccact ggttacttac cttgtgtgcc ctttctgaag tgacaggatt
4501 aggtcctgac atcatacaag ctaactccat gtactctttc tatggtgatg atgagattgt
4561 gagcacagac ataaaattgg acccagagaa attgaccgca aagctcaaag aatatggcct
4621 caaacccact cggcccgaca aaactgaggg gccgttggtg attagtgagg acctgaatgg
4681 gttgactttc ctccgccgaa cagtcacccg tgatccagca ggttggtttg gaaagttgga
4741 ccaaaattcc atcctcaggc agttgtactg gacaagagga cccaaccatg aagaccccag
4801 tgagaccatg ataccacacg cacaaagacc tgtgcagctc atggcactac taggagaatc
4861 ctccctacat ggaccctcat tttacagcaa ggttagcaaa ttagtcatat ctgaacttaa
4921 agagggagga atggattttt atgtgcccag acaagagcca atgttcagat ggatgaggtt
4981 ctcagatcta agcacatggg agggcgatcg caatctggct cccagttttg tgaatgaaga
5041 tggcgtcgaa tgacgccgct ccatctaatg atggtgctgc tggtctcgta ccagagggca
5101 acaacgagac ccttccccta gaaccagttg cgggcgcagc tatagccgca cccgtcactg
5161 gccaaaataa tataattgac ccctggatta gaacaaattt tgtgcaagca ccaaatggag
5221 agttcacagt gtcacccaga aactctcccg gagaaatttt attaaattta gagttgggcc
5281 ctgatttgaa cccttatttg gctcatttgt caaggatgta caatgggtat gctggtggag
5341 tggaagttca ggttctcctg gcagggaacg cgttcactgc cggaaagatc ctcttcgccg
5401 ccgtcccgcc aaatttccca gtggaattct taagcccagc ccagatcaca atgctcccac
5461 atttaatagt agatgttagg actcttgaac caattatgat cccactccct gatgttagga
5521 atacattctt ccattatagt aaccagccta acagccgcat gagattagtg gctatgctct
5581 ataccccact cagatctaat ggctcaggtg atgatgtctt tactgtctct tgcagggttt
5641 tgactaggcc tactcctgat tttgagttca cttatttagt gccaccttct gttgaatcta
5701 aaactaagcc tttttcctta cctattttaa ccctttctga gctcacaaat tcgaggtttc
5761 cagtccccat cgattcgctt ttcaccgccc agaataatgt gttgcaggtg cagtgtcaaa
5821 atggcaggtg tacacttgat ggtgagttac aaggcacaac ccagttgctc ccaactggca
5881 tctgtgcatt cagaggacgg gtgacagcac aaattaacca acgtgacagg tggcacatgc
5941 aactgcaaaa cctcaatggt acaacatatg acccaactga tgatgtgcca gccccgctgg
6001 gtacacctga cttcaagggc gtcgtgtttg ggatggtaag ccaaagaaat gtgggtaatg
6061 atgcgcctgg ctcaaccaga gcccaacagg cgtgggtttc aacctatagc ccccaatttg
6121 tccccaaatt aggttctgtc aatcttagaa ttagtgataa tgatgatttc caattccagc
6181 cgacaaaatt cacaccagtg ggcgtcaatg atgacgatga tggccacccg ttcagacagt
6241 gggaactacc aaactattca ggggagctta ccttgaatat gaatcttgcc cccccagttg
6301 ctccaaattt tcctggtgaa caattgttat tcttcaggtc tttcgtgcca tgctcaggag
6361 gttacaacca aggtattata gattgtctta ttccccaaga atggatccaa cacttctatc
6421 aggaatcagc accctcccag tcagacgtgg ccctaatcag gtatgtcaac cccgatacgg
6481 gacgtacact gtttgaagca aaattgcaca ggtctggtta cattactgtg gctcactctg
6541 gagactatcc tcttgttgtt ccggctaatg gatactttag gtttgattct tgggtaaatc
6601 agttttactc actcgcccca atgggaactg ggaatgggcg aaggagggct cagtaatggc
6661 tggggctttc attgcaggat tggcaggcga catgctcacg tcatctgtgg gctcccttgt
6721 gaacgcaggg gcaaacgcca tcaaccaaaa gatagacttt gaaaacaaca aacaactcca
6781 gtctgcttcc tttcagcatg ataaagagat gctccaagcg caggtgaggg caaccaagca
6841 gctgcaatct gaaatgatag ccctaaaaca gggggttttg gccgcaggcg gcttttcccc
6901 cactgatgca gcaaggggat ccattggtgc acccatgaca aaggtgcttg actggtctgg
6961 cactcgatac tgggcgccca attccacaaa gacaactggc tattcgggac aattcacctc
7021 ttcacctgtg catatgtcta gcccaaatgc tccacaatca aaacctgcaa agcctaggtc
7081 tctagctcct tcctcttctt ctagcagtgt ctatagtatg tatactcaat ctactcattc
7141 aacatctggc tcttctagta atgcttcttc tgcctccaca aaattgacaa atttaagctc
7201 tggctcctct caaaacagaa cagcagagtg ggtaaatcaa cagagaagtc ttagcccttt
7261 catgagtggc gcacttaaca tctcacatgt cacgccaccc tcaagtaggg cttccagttc
7321 tgggacggtc tcgaccgtgc ccaaggaagt tttggactcc tggacgtctg cgtttaacac
7381 acacagacag ccgctcttcg cacacctcag agtgaggggg gagtcacgtg tttagtgaaa
7441 agaaataatt ggctataatg tgatttcttt ctaaatttgg ctaatttgta tcttttaaaa
7501 aaaaaa
//