Typing tool
|
Complete norovirus genomes
KT326181 | GII.17 | ||
---|---|---|---|
GII.P17 |
ORF1: 1..5065 ORF2: 5046..6668 ORF3: 6668..7447LOCUS KT326181 7518 bp RNA linear VRL 08-MAR-2016 DEFINITION Norovirus Hu/GII.17/CUHK-NS-649/HKG/2015 nonstructural polyprotein (ORF1) gene, partial cds; and viral protein 1 (VP1) and viral protein 2 (VP2) genes, complete cds. ACCESSION KT326181 VERSION KT326181.1 KEYWORDS . SOURCE Norovirus Hu/GII.17/CUHK-NS-649/HKG/2015 ORGANISM Norovirus Hu/GII.17/CUHK-NS-649/HKG/2015 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7518) AUTHORS Chan,M.C., Lee,N., Hung,T.N., Kwok,K., Cheung,K., Tin,E.K., Lai,R.W., Nelson,E.A., Leung,T.F. and Chan,P.K. TITLE Rapid emergence and predominance of a broadly recognizing and fast-evolving norovirus GII.17 variant in late 2014 JOURNAL Nat Commun 6, 10061 (2015) PUBMED 26625712 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7518) AUTHORS Chan,M.C.W., Hung,T.T.N. and Chan,P.K.S. TITLE Direct Submission JOURNAL Submitted (22-JUL-2015) Department of Microbiology, The Chinese University of Hong Kong, CUHK, Shatin 852, Hong Kong COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7518 /organism="Norovirus Hu/GII.17/CUHK-NS-649/HKG/2015" /mol_type="genomic RNA" /strain="Hu/GII.17/CUHK-NS-649/HKG/2015" /isolate="CUHK-NS-649" /host="Homo sapiens" /db_xref="taxon:1760921" /country="Hong Kong" /collection_date="2015" /note="genotype: GII.17" gene <1..5065 /gene="ORF1" CDS <1..5065 /gene="ORF1" /note="contains RNA-dependent RNA polymerase; RdRp" /codon_start=2 /product="nonstructural polyprotein" /protein_id="ALP48595.1" /translation="NNNNDKEKSSSDSLFANMSVTFKKALGARSKQPPPGETKQIQKP PRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVAQPDAQNTAYSVPPLS QREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAKIEITPLSLY WRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTG FFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKLRPLNILNILAT CDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLAVELVPVVMGG IGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEANELAMVR AIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIVGTIN ALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVASTLSGDQ RIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNCDRIENK GKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFPGQPDMW KDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARASGLLHERMDEFE LQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDELKQAIKNISI KKCQIVYNGCTYTMESDGRGKVVVEKVQNTTVQTNNELVGALHHLRSARIRYYVKCFQ EAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCPKPRDEDDLTID SRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRD RYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNPDD FKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITSTHVIPK GITGAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSILIKRTTG ELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGND LVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPKLSTKTK FWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPNPNVLES AKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFTGKLADQ ASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCARAFGG LMDEFKANCITLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLEAAL EIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQWNSIAHWLLT LCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKT EGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPSETMIPH AQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMRFSDLS TWEGDRNLAPSFVNEDGVE" gene 5046..6668 /gene="VP1" CDS 5046..6668 /gene="VP1" /codon_start=1 /product="viral protein 1" /protein_id="ALP48596.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ" gene 6668..7447 /gene="VP2" CDS 6668..7447 /gene="VP2" /codon_start=1 /product="viral protein 2" /protein_id="ALP48597.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLVPSSSSSSVYSMYTQST HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV" ORIGIN 1 aaacaacaac aacgacaagg aaaaatcttc aagtgacagc ttgtttgcta acatgtctgt 61 cacttttaag aaagccctcg gggcgcggtc taaacaaccg cccccgggag aaacaaaaca 121 aatacaaaaa ccaccaaggc caccgacacc ggaattggtg aagagaatac ctccaccccc 181 acccaatggc gaggacgaac cagggatagt gtacaaggtg ggagagggtg tgtctgggct 241 gcccgaccta acaactgtgg cacaacctga cgcacaaaac acagcttata gtgttccccc 301 acttagccag agagaagtcg gcgaagctaa agaaccgctg cctggctcca ttctggaaat 361 gtgggatggt gagatctacc actatgggct gtatgttgag cgggggcatg tgctcggagt 421 acacaaacca cctgctgcaa taagccttgc caaaattgaa ataacaccgc tgtctctcta 481 ctggagagtg gtctacactc cccagtattt gatagatcca ggaactctta agaacttgag 541 tggagagact ttcccataca cggcctttga caacaactgt tatgccttct gttgttgggt 601 cctagacctc aacgactcct ggcttagcag gagaatgatc caaagaacaa ctggattctt 661 caaaccttat caggattgga acagaaaacc cttaccaacc atggatgaac cgaaaatcaa 721 gaaggccgcg aatgctgtcc tatgcgctct ctcctcactc ttcactagac ccattaagga 781 catcattgga aagcttagac cactgaacat tcttaatata ttggcaacct gcgattggac 841 ttttgcaggc atagtggaat ccttgatcct tcttgctgaa ctctttgggg tgttctggac 901 acccccagat gtgtctgcga tgattgctcc cttactcggt gactacgaga tgcaaggccc 961 cgaagacctg gccgtggaac ttgtgcccgt ggtgatggga ggaataggtt tggtgttagg 1021 attcaccaaa gaaaagatcg gcaagatgct ttcatcagct gcgaccacac ttagggcctg 1081 caaggatcta ggatcttatg gattggagat actcaaattg gtcatgaagt ggttcttccc 1141 caagaaggag gaggctaacg aactagccat ggtgagggcc attgaggatg cagtcctgga 1201 tttggaggca atagaaaaca atcacatgac cacccttctc aaggataaag acagcctggc 1261 cacatacatg aggactcttg acttggaaga agagaaagca aggaaactgt caaccaaatc 1321 ggcgtcacct gacatcgtgg gtacaataaa tgcattattg gctaggatag cagccgccag 1381 gtcactggtc cacaaggcta aggaggagct ctcgagcaga cagagacctg ttgttgtaat 1441 gatatcaggt agaccaggta taggaaagac ccatctggcc agagagctag ccaagaaagt 1501 tgcgtcaaca ctgtcaggcg accaaaggat tggactggta cctaggaatg gcgtcgacca 1561 ttgggacgcc tacaagggag aaagggtggt tctgtgggat gattatggta tgagcaaccc 1621 tatacaggac gcactgaggc tccaagaatt ggctgacacc tgtcctctga ccctaaattg 1681 tgataggatt gaaaacaaag gaaaagtgtt cgacagtgat gccataatta taacaaccaa 1741 ccttgcaaac ccagcaccac tagactatgt caactttgag gcctgctcta gacgcataga 1801 cttcttggtg tatgcagacg cacctgacat tgagaaggct aagcgtgact tccctggcca 1861 accagatatg tggaaagacc atttcagacc agacttctca cacattaaac ttcagctggc 1921 accacaggga ggttttgaca aaaatggcaa caccccacat ggcaaaggtg tggtgaagtc 1981 cctgacgatt ggttctctga tcgccagggc ctccggcttg ctccacgaga gaatggatga 2041 atttgagctc caaggttctg acttgccaac cttcaatttt gaccgcaaca aagtcgccgc 2101 cttcagacaa ttagcagctg aaaacaaata tggtcttatg gacacactga gggtcggcaa 2161 ccaactgaaa agtgttaaga ccctggatga gctgaagcag gccataaaga acatcagtat 2221 caagaagtgt cagatagtgt ataatggatg cacctacacc atggaatctg atgggagggg 2281 caaggttgtg gttgaaaagg tacaaaacac aacagttcaa accaacaatg aacttgtagg 2341 ggcgctccac cacctgagat ctgcaaggat aagatactat gttaaatgtt tccaagaagc 2401 catttactct ctactccaaa ttgctggtgc agccttcgtc acctcacgca tcgtgaggcg 2461 catgaacata tcaaacctct ggtcgaagcc acccatcgag gagggtgatg agcctgaaga 2521 cagaggagga tgccccaagc ccagggatga agatgacctc actattgact ccagagacat 2581 taaagtggaa gggaagaagg gcaagaacaa gtctggccgg ggcaagaaac acacagcctt 2641 ctcttccaag ggcctcagtg atgaagagta cgatgagtac aagagaatca gagaggagag 2701 gaatggcaaa tactcaatag aggaatacct ccaagatagg gacagatact atgaagagct 2761 tgccattgct aaggccactg aggaggactt ctgtgaggag gaggagatca aaatccgcca 2821 gagaatcttc cgacccacca ggaagcagcg gaaagaggaa agggccacgc ttgggcttgt 2881 cacaggatca gaaatcagaa agaggaatcc agatgacttt aaaccaaaag gaaaattgtg 2941 ggctgatgac aacaggagcg tggattacaa tgagaggata gattttgagg ctcccccgag 3001 tgtttggtct aggatagtca actttggcac aggctgggga ttctgggttt ctccaagtct 3061 ctttataact tcaacacacg tcataccaaa aggaatcact ggggcctttg gagtgcccat 3121 aaaccaaatc caaattcaca aatctggaga attttgccgc ttgcggtttc caaagccaat 3181 tagaccagac gtgagtggga tgatcttgga agagggcgcc cctgaaggca ctgttgtgtc 3241 tattctcatc aaaaggacaa caggggagct gatgcctctt gcagtcagaa tggggactca 3301 tgccacaatg aaaatccaag gaagaacggt gggtggtcag atgggtatgc ttctcactgg 3361 ctcaaatgct aaaagcatgg atctaggcac aacgccaggt gactgcggat gtccatacat 3421 atacaaaagg ggcaatgacc ttgtggtcat tggggtgcac actgcagcag ctcgtggagg 3481 caacacggtc atatgtgcca cacagggaag tgaaggtgaa gccactcttg aaggaggtga 3541 caacaagggt acctattgtg gagcccccat tttgggacct ggcaatgcac caaaattgag 3601 cacaaagaca aaattctgga gatcctctaa cgcaccgctt cccccaggta cttatgaacc 3661 agcatacctt ggtgggagag acccgcgcgt gaagggaggc ccatctctgc aacaagttat 3721 gagagaccaa ctcaaacctt ttacagagcc cagagggaag ccaccaaacc caaatgtctt 3781 agagtcagca aagaagacta tcatcaatgt tctggaacaa accattgacc cccctcaaaa 3841 gtggtcatat gcccaagctt gtgcatccct cgacaagaca acctccagtg gatacccgca 3901 ccacgtccgg aagaatgact attggagtgg tgaatccttc acaggaaaac ttgcagatca 3961 ggcttcaaaa gcaaatctca tgtatgagga aggcaagcac atgcaaccag tttacaccgc 4021 agcactcaaa gacgagctcg tgaaaactga caaaatttat ggcaaaatca agaaaagact 4081 cctgtggggt tctgacctct ccacaatgat tcgatgcgcc agagcatttg gtggtctcat 4141 ggatgaattc aaagcaaatt gtattacact ccctgtcaga gttggtatga atatgaatga 4201 agatggtccc ataatatttg agaaacactc caggtacagg taccactatg atgctgatta 4261 ctcccgctgg gactccacac aacagcgggc agtgctggaa gcggcacttg aaatcatggt 4321 gagattttct gctgagccac agctggcaca aatagtggca gaggacctgc tgtcaccaag 4381 tgtggttgat gtgggcgatt tcaaaatcgc tatcaatgaa ggcctaccat ctggcgtgcc 4441 ttgcacctca caatggaatt ctattgccca ctggttactt accttgtgtg ccctttctga 4501 agtgacagga ttaggtcctg acatcataca agctaactcc atgtactctt tctatggtga 4561 tgatgagatt gtgagcacag acataaaatt ggacccagag aaactgaccg caaagctcaa 4621 agaatatggc cttaaaccca ctcggcccga caaaactgag gggccgttgg tgattagtga 4681 ggacctgaat gggttgactt tcctccgccg aacagtcacc cgtgatccag caggttggtt 4741 tggaaagttg gaccaaaact ccatcctcag gcagttgtac tggacaagag gacccaacca 4801 tgaagacccc agtgagacca tgataccaca cgcacaaaga cctgtgcagc tcatggcact 4861 actaggagaa tcctccctac atggaccctc attttacagc aaggttagca aattagtcat 4921 atctgaactt aaagagggag gaatggattt ttatgtgccc agacaagagt caatgttcag 4981 atggatgagg ttctcagatc taagcacatg ggagggcgat cgcaatctgg ctcccagttt 5041 tgtgaatgaa gatggcgtcg aatgacgccg ctccatctaa tgatggtgct gctggtctcg 5101 taccagaggg caacaacgag accctccccc tagaaccagt tgcgggcgca gctatagccg 5161 cacccgtcac tggccaaaat aacataattg acccctggat tagaacaaat tttgtgcaag 5221 caccaaatgg agagttcaca gtgtcaccca gaaactctcc tggagaaatt ttattaaact 5281 tagagttggg tcctgatttg aacccttatt tggctcattt gtcaaggatg tacaatgggt 5341 atgctggtgg agtggaagtt caggttctcc tggcagggaa cgcgttcact gccggaaaga 5401 tcctcttcgc cgccgtcccg ccaaatttcc cagtggaatt cttaagccca gcccagatca 5461 caatgctccc acatttaata gtagatgtta ggactcttga accaattatg atcccacttc 5521 ctgatgttag gaatacattc ttccattata gtaaccagcc taacagccgc atgagattag 5581 tggctatgct ctatacccca ctcagatcta atggctcagg tgatgatgtc tttactgtct 5641 cttgcagggt tttgactagg cctactcctg attttgagtt cacttattta gtgccacctt 5701 ctgttgaatc taaaactaag cctttctcct tacccatttt aaccctttct gagctcacaa 5761 attcgaggtt cccagtcccc atcgattcgc ttttcaccgc ccagaataat gtgttgcagg 5821 tgcagtgtca aaatggcagg tgtacacttg atggtgagtt acaaggcaca actcagttgc 5881 tcccatctgg catctgtgca ttcagaggac gggtgacagc acaaattaac caacgtgaca 5941 ggtggcacat gcaactgcaa aatctcaatg gtacaacata tgacccaact gatgatgtgc 6001 cagccccgct gggtacacct gacttcaagg gcgtcgtgtt tgggatggta agccaaagaa 6061 atgtgggtaa tgatgcgcct ggctcaacca gagcccaaca ggcgtgggtt tcaacttata 6121 gcccccaatt tgtccccaaa ttaggttctg ttaatcttag aattagtgat aatgatgatt 6181 tccaattcca gccgacaaaa ttcacaccag tgggcgtcaa tgatgacgat gatggccacc 6241 cgttcagaca atgggaacta ccaaactatt caggggagct taccttgaat atgaaccttg 6301 cccccccagt tgctccaaat tttcctggtg aacaattgtt attcttcaga tctttcgtgc 6361 catgctcagg aggttacaac caaggtatta tagattgtct tattccccaa gaatggatcc 6421 aacacttcta tcaggaatca gcaccctccc agtcagacgt ggccctaatc aggtatgtca 6481 accccgatac gggacgtaca ctgtttgaag caaaattgca cagatctggt tacatcactg 6541 tggctcactc tggagactat cctcttgttg ttccggctaa tggatacttc agatttgatt 6601 cttgggtaaa tcagttttac tcactcgccc caatgggaac tgggaatggg cgaaggaggg 6661 ctcagtaatg gctggggctt tcattgcagg attggcaggc gacatgctca cgtcatctgt 6721 gggctctctt gtgaacgcag gggcaaacgc catcaaccaa aagatagact ttgaaaacaa 6781 caaacaactc cagtctgctt cctttcagca tgataaagag atgctccaag cgcaggtgag 6841 ggcaaccaag cagctgcaat ctgaaatgat agccctaaaa cagggggttt tggccgcagg 6901 cggcttttcc cccactgatg cagcaagggg atccattggt gcacccatga caaaggtgct 6961 tgactggtct ggcactcgat actgggcgcc caattccaca aagacaactg gctattcggg 7021 acaattcacc tcttcacctg tgcatatgtc tagcccaaat gctccacaat caaaacctgc 7081 aaagcctagg tctctagttc cctcctcttc ttctagcagt gtctatagta tgtatactca 7141 atctactcat ttaacatctg gctcttctag taatgcttct tctgcctcca caaaattgac 7201 aaatttaagc tctggctcct ctcaaaacag aacagcagag tgggtaaatc aacagagaag 7261 tcttagccct ttcatgagtg gcgcacttaa catctcacat gtcacgccac cctcaagtag 7321 ggcttccagt tctgggacgg tctcgaccgt gcccaaggaa gttttggact cctggacgtc 7381 tgcgtttaac acacacagac agccgctctt cgcacacctc agagtgaggg gggagtcacg 7441 tgtttagtga aaagaaataa ttggctataa tgtgatttct ttctaaattt ggctaatttg 7501 tatcttttaa aaaaaaaa //