Typing tool
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Typing tool
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Complete norovirus genomes
| KR270446 | GII.17 | |
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| GII.P17 |
ORF1: 1..750
ORF2: 731..2353
ORF3: 2353..3132
LOCUS KR270446 3198 bp RNA linear VRL 04-NOV-2015
DEFINITION Norovirus Hu/JSSZ15080/CHN RNA-dependent RNA polymerase gene,
partial cds; and capsid protein and minor structural protein genes,
complete cds.
ACCESSION KR270446
VERSION KR270446.1
KEYWORDS .
SOURCE Norovirus Hu/JSSZ15080/CHN
ORGANISM Norovirus Hu/JSSZ15080/CHN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 3198)
AUTHORS Fu,J.G., Ai,J., Jin,M., Zhu,Y.F., Bao,C.J., Tang,F.Y. and Qi,X.
TITLE Emergence of new GII.3/GII.17 norovirus variants from norovirus
outbreak survey in Jiangsu, China during the winter 2014-15
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3198)
AUTHORS Fu,J.G., Ai,J., Jin,M., Zhu,Y.F., Bao,C.J., Tang,F.Y. and Qi,X.
TITLE Direct Submission
JOURNAL Submitted (24-APR-2015) Department of Acute Infectious Disease
Control and Prevention, Jiangsu Provincial Centre for Disease
Control and Prevention, Jiangsu Rd, 172, Nanjing, Jiangsu 210009,
China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3198
/organism="Norovirus Hu/JSSZ15080/CHN"
/mol_type="genomic RNA"
/strain="Hu/JSSZ15080/CHN"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:1747491"
/geo_loc_name="China"
/collection_date="10-Mar-2015"
CDS <1..750
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="ALL73881.1"
/translation="MVRFSAEPQLALIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGP
NHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQE
SMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 731..2353
/codon_start=1
/product="capsid protein"
/protein_id="ALL73882.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN
DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 2353..3132
/codon_start=1
/product="minor structural protein"
/protein_id="ALL73883.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 atggtgagat tttctgctga gccacagctg gcactaatag tggcagagga cctgctgtca
61 ccaagtgtgg ttgatgtggg cgatttcaaa atcgctatca atgaaggcct accatctggc
121 gtaccttgca cctcacaatg gaattctatt gcccactggt tacttacctt gtgtgccctt
181 tctgaagtga caggattagg tcctgacatc atacaagcta actccatgta ctctttctat
241 ggtgatgatg agattgtgag cacagacata aaattggacc cagagaaatt gaccgcaaag
301 ctcaaagaat atggccttaa acccactcgg cccgacaaaa ctgaggggcc gttggtgatt
361 agtgaggacc tgaatgggtt gactttcctc cgccgaacag tcacccgtga tccagcaggt
421 tggtttggaa agttggacca aaactccatc ctcaggcagt tgtactggac aagaggaccc
481 aaccatgaag accccagtga gaccatgata ccacacgcac aaagacctgt gcagctcatg
541 gcactactag gagaatcctc cctacatgga ccctcatttt acagcaaggt tagcaaatta
601 gtcatatctg aacttaaaga gggaggaatg gatttttatg tgcccagaca agagtcaatg
661 ttcagatgga tgaggttctc agatctaagc acatgggagg gcgatcgcaa tctggctccc
721 agttttgtga atgaagatgg cgtcgaatga cgccgctcca tctaatgatg gtgctgctgg
781 tctcgtacca gagggcaaca acgagaccct tcccctagaa ccagttgcgg gcgcagctat
841 agccgcaccc gtcactggcc aaaataacat aattgacccc tggattagaa caaattttgt
901 gcaagcacca aatggagagt tcacagtgtc acccagaaac tctcctggag aaattttatt
961 aaacttagag ttgggccctg atttgaaccc ttatttggct catttgtcaa ggatgtacaa
1021 tgggtatgct ggtggagtgg aagttcaggt tctcctggca gggaacgcgt tcactgccgg
1081 aaagatcctc ttcgccgccg tcccgccaaa tttcccagtg gaattcttaa gcccggccca
1141 gatcacaatg ctcccacatt taatagtaga tgttaggact cttgaaccaa ttatgatccc
1201 actccctgat gttaggaata cattcttcca ttatagtaac cagcctaaca gccgcatgag
1261 attagtggct atgctctata ccccactcag atctaatggc tcaggtgatg atgtctttac
1321 tgtctcttgc agggttttga ctaggcctac tcctgatttt gagttcactt atttagtgcc
1381 accttctgtt gaatctaaaa ctaagccttt ttccttacct attttaaccc tttctgagct
1441 cacaaattcg aggttcccag tccccatcga ttcgcttttc accgcccaga ataatgtgtt
1501 gcaggtgcag tgtcaaaatg gcaggtgtac acttgatggt gagttacaag gcacaaccca
1561 gttgctccca tctggcatct gtgctttcag aggacgggtg acagcacaaa ttaaccaacg
1621 tgacaggtgg cacatgcaac tgcaaaacct caatggtaca acatatgacc caactgatga
1681 tgtgccagcc ccgctgggta cacctgactt caagggcgtc gtgtttggga tggtaagcca
1741 aagaaatgtg ggtaatgatg cgcctggctc aaccagagcc caacaggcgt gggtttcaac
1801 ctatagcccc caatttgtcc ccaaattagg ttctgtcaat cttagaatta gtgataatga
1861 tgatttccaa ttccagccga caaaattcac accagtgggc gtcaatgatg acgatgatgg
1921 ccacccgttc agacaatggg aactaccaaa ctattcaggg gagcttacct tgaatatgaa
1981 tcttgccccc ccagttgctc caaattttcc tggtgaacaa ttgttattct tcagatcttt
2041 cgtgccatgc tcaggaggtt acaaccaagg tattatagat tgtcttattc cccaagaatg
2101 gatccaacac ttctatcagg aatcagcacc ctcccagtca gacgtggccc taatcaggta
2161 tgtcaacccc gatacgggac gtacactgtt tgaagcaaaa ttgcacagat ctggttacat
2221 tactgtggct cactctggag actatcctct tgttgttccg gctaatggac actttagatt
2281 tgattcttgg gtaaatcagt tttactcact cgccccaatg ggaactggga atgggcgaag
2341 gagggctcag taatggctgg ggctttcatt gcaggattgg caggcgacat gctcacgtca
2401 tctgtgggct cccttgtgaa cgcaggggca aacgccatca accaaaagat agactttgaa
2461 aacaacaaac aactccagtc tgcttccttt cagcatgata aagagatgct ccaagcgcag
2521 gtgagggcaa ccaagcagct gcaatctgaa atgatagccc taaaacaggg ggttttggcc
2581 gcaggcggct tttcccccac tgatgcagca aggggatcca ttggtgcacc catgacaaag
2641 gtgcttgact ggtctggcac tcgatactgg gcgcccaatt ccacaaagac aactggctat
2701 tcgggacaat tcacctcttc acctgtgcat atgtctagcc caaatgctcc acaatcaaaa
2761 cctgcaaagc ctaggtctct agctccttcc tcttcttcta gcagtgtcta tagtatgtat
2821 acccaatcta ctcatttaac atctggctct tctagtaatg cttcttctgc ctccacaaaa
2881 ttgacaaatt taagctctgg ctcctctcaa aacagaacag cagagtgggt aaatcaacag
2941 agaagtctta gccctttcat gagtggcgca cttaacatct cacatgtcac gccaccctca
3001 agtagggctt ccagttctgg gacggtctcg accgtgccca aggaagtttt ggactcctgg
3061 acgtctgcgt ttaacacaca cagacagccg ctcttcgcac acctcagagt gaggggggag
3121 tcacgtgttt agtgaaaaga aataattggc tataatgtga tttctttcta aatttggcta
3181 atttgtatct tttaaaaa
//