Typing tool
|
Complete norovirus genomes
KR270445 | GII.17 | ||
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GII.P17 |
ORF1: 1..750 ORF2: 731..2353 ORF3: 2353..3132LOCUS KR270445 3198 bp RNA linear VRL 04-NOV-2015 DEFINITION Norovirus Hu/JSWX14012/CHN RNA-dependent RNA polymerase gene, partial cds; and capsid protein and minor structural protein genes, complete cds. ACCESSION KR270445 VERSION KR270445.1 KEYWORDS . SOURCE Norovirus Hu/JSWX14012/CHN ORGANISM Norovirus Hu/JSWX14012/CHN Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3198) AUTHORS Fu,J.G., Ai,J., Jin,M., Zhu,Y.F., Bao,C.J., Tang,F.Y. and Qi,X. TITLE Emergence of new GII.3/GII.17 norovirus variants from norovirus outbreak survey in Jiangsu, China during the winter 2014-15 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3198) AUTHORS Fu,J.G., Ai,J., Jin,M., Zhu,Y.F., Bao,C.J., Tang,F.Y. and Qi,X. TITLE Direct Submission JOURNAL Submitted (24-APR-2015) Department of Acute Infectious Disease Control and Prevention, Jiangsu Provincial Centre for Disease Control and Prevention, Jiangsu Rd, 172, Nanjing, Jiangsu 210009, China COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3198 /organism="Norovirus Hu/JSWX14012/CHN" /mol_type="genomic RNA" /strain="Hu/JSWX14012/CHN" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1747492" /country="China" /collection_date="10-Mar-2015" CDS <1..750 /codon_start=1 /product="RNA-dependent RNA polymerase" /protein_id="ALL73878.1" /translation="MVRFSAEPQLALIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLK EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGP NHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQE SMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 731..2353 /codon_start=1 /product="capsid protein" /protein_id="ALL73879.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAASVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" CDS 2353..3132 /codon_start=1 /product="minor structural protein" /protein_id="ALL73880.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHVSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISQVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV" ORIGIN 1 atggtgagat tttctgctga gccacagctg gcactaatag tggcagagga cctgctgtca 61 ccaagtgtgg ttgatgtggg cgatttcaaa atcgctatca atgaaggcct accatctggc 121 gtgccttgca cctcacaatg gaattctatt gcccactggt tacttacctt gtgtgccctt 181 tctgaagtga caggattagg tcctgacatc atacaagcta actccatgta ctctttctat 241 ggtgatgatg agattgtgag cacagacata aaattggacc cagagaaatt gaccgcaaag 301 ctcaaagaat atggccttaa acccactcgg cccgacaaaa ctgaggggcc gttggtgatt 361 agtgaggacc tgaatgggtt gactttcctc cgccgaacag tcacccgtga tccagcaggt 421 tggtttggaa agttggacca aaactccatc ctcaggcagt tgtactggac aagaggaccc 481 aaccatgaag accccagtga gaccatgata ccacacgcac aaagacctgt gcagctcatg 541 gcactactag gagaatcctc cctacatgga ccctcatttt acagcaaggt tagcaaatta 601 gtcatatctg aacttaaaga gggaggaatg gatttttatg tgcccagaca agagtcaatg 661 ttcagatgga tgaggttctc agatctaagc acatgggagg gcgatcgcaa tctggctccc 721 agttttgtga atgaagatgg cgtcgaatga cgccgctcca tctaatgatg gtgctgctgg 781 tctcgtacca gagggcaaca acgagaccct tcccctagaa ccagttgcgg gcgcagctat 841 agccgcatcc gtcactggcc aaaataacat aattgacccc tggattagaa caaattttgt 901 gcaagcacca aatggagagt tcacagtgtc acccagaaac tctcctggag aaattttatt 961 aaacttagag ttgggccctg atttgaaccc ttatttggct catttgtcaa ggatgtacaa 1021 tgggtatgct ggtggagtgg aagttcaggt tctcctggca gggaacgcgt tcactgccgg 1081 aaagatcctc ttcgccgccg tcccgccaaa tttcccagtg gaattcttaa gcccagccca 1141 gatcacaatg ctcccacatt taatagtaga tgttaggact cttgaaccaa ttatgatccc 1201 actccctgat gttaggaata cattcttcca ttatagtaac cagcctaaca gccgcatgag 1261 attagtggct atgctctata ccccactcag atctaatggc tcaggtgatg atgtctttac 1321 tgtctcttgc agggttttaa ctaggcctac tcctgatttt gagttcactt atttagtgcc 1381 accttctgtt gaatctaaaa ctaagccttt ttccttacct attttaaccc tttctgagct 1441 cacaaattcg aggttcccag tccccatcga ttcgcttttc accgcccaga ataatgtgtt 1501 gcaggtgcag tgtcaaaatg gcaggtgtac acttgatggt gagttacaag gcacaaccca 1561 gttgctccca tctggcatct gtgcattcag aggacgggtg acagcacaaa ttaaccaacg 1621 tgacaggtgg cacatgcaac tgcaaaacct caatggtaca acatatgacc caactgatga 1681 tgtgccagcc ccgctgggta cacctgactt caagggcgtc gtgtttggga tggtaagcca 1741 aagaaatgtg ggtaatgatg cgcctggctc aaccagagcc caacaggcgt gggtttcaac 1801 ctatagcccc caatttgtcc ccaaattagg ttctgtcaat cttagaatta gtgataatga 1861 tgatttccaa ttccagccga caaaattcac accagtgggc gtcaatgatg acgatgatgg 1921 ccacccgttc agacaatggg aactaccaaa ctactcaggg gagcttacct tgaatatgaa 1981 tcttgccccc ccagttgctc caaattttcc tggtgaacaa ttgttattct tcagatcttt 2041 cgtgccatgc tcaggaggtt acaaccaagg tattatagat tgtcttattc cccaagaatg 2101 gatccaacac ttctatcagg aatcagcacc ctcccagtca gacgtggccc taatcaggta 2161 tgtcaacccc gatacgggac gtacactgtt tgaagcaaaa ttgcacagat ctggttacat 2221 tactgtggct cactctggag actatcctct tgttgttccg gctaatggac actttagatt 2281 tgattcttgg gtaaatcagt tttactcact cgccccaatg ggaactggga atgggcgaag 2341 gagggctcag taatggctgg ggctttcatt gcaggattgg caggcgacat gctcacgtca 2401 tctgtgggct cccttgtgaa cgcaggggca aacgccatca accaaaagat agactttgaa 2461 aacaacaaac aactccagtc tgcttccttt cagcatgata aagagatgct ccaagcgcag 2521 gtgagggcaa ccaagcagct gcaatctgaa atgatagccc taaaacaggg ggttttggcc 2581 gcaggcggct tttcccccac tgatgcagca aggggatcca ttggtgcacc catgacaaag 2641 gtgcttgact ggtctggcac tcgatactgg gcgcccaatt ccaccaagac aactggctat 2701 tcgggacaat tcacctcttc acctgtgcat gtgtctagcc caaatgctcc acaatcaaaa 2761 cctgcaaagc ctaggtctct agctccttcc tcttcttcta gcagtgtcta tagtatgtat 2821 actcaatcta ctcatttaac atctggctct tctagtaatg cttcttctgc ctccacaaaa 2881 ttgacaaatt taagctctgg ctcctctcaa aacagaacag cagagtgggt aaatcaacag 2941 agaagtctta gccctttcat gagtggcgca cttaacatct cacaagtcac gccaccctca 3001 agtagggctt ccagttctgg gacggtctcg accgtgccca aggaagtttt ggactcctgg 3061 acgtctgcgt ttaacacaca cagacagccg ctcttcgcac acctcagagt gaggggggag 3121 tcacgtgttt agtgaaaaga aataattggc tataatgtga tttctttcta aatttggcta 3181 atttgtatct tttaaaaa //