Typing tool
|
Complete norovirus genomes
KR154230 | GII.17 | ||
---|---|---|---|
GII.P17 |
ORF1: 1..5103 ORF2: 5084..6706 ORF3: 6706..7485LOCUS KR154230 7552 bp RNA linear VRL 04-OCT-2015 DEFINITION Norovirus Hu/GII.17/CGMH69/2015/TW nonstructural polyprotein (ORF1), capsid protein (VP1), and minor capsid protein (VP2) genes, complete cds. ACCESSION KR154230 VERSION KR154230.1 KEYWORDS . SOURCE Norovirus Hu/GII.17/CGMH69/2015/TW ORGANISM Norovirus Hu/GII.17/CGMH69/2015/TW Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7552) AUTHORS Lee,C.C., Feng,Y., Chen,S.Y., Tsai,C.N., Lai,M.W. and Chiu,C.H. TITLE Emerging Norovirus GII.17 in Taiwan JOURNAL Clin. Infect. Dis. (2015) In press PUBMED 26306886 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 7552) AUTHORS Lee,C.C., Wang,W.L., Chen,S.Y., Tsai,C.N. and Chiu,C.H. TITLE Direct Submission JOURNAL Submitted (21-APR-2015) Graduate Institute of Clinical Medical Science, College of Medicine, Chang Gung University, 259, Wen-Hwa 1st Road, Kwei-Shan, Taoyuan County 333, Taiwan R.O.C. COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7552 /organism="Norovirus Hu/GII.17/CGMH69/2015/TW" /mol_type="genomic RNA" /isolate="Hu/GII.17/CGMH69/2015/TW" /isolation_source="fecal" /host="Homo sapiens" /db_xref="taxon:1729654" /country="Taiwan" /collection_date="2015" /note="genotype: GII.17" gene 1..5103 /gene="ORF1" CDS 1..5103 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="ALG05456.1" /translation="MVSNDASAAVAGKNNNNDKEKSSSDSLLANMSVTFKKALGARSK QPPPGETKQIQKPPRPPTPELVKRVPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQP DAQNTAYSVPPLGQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAI SLAKIEITPLSLYWRVVYTPQYLIAPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLND SWLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIG KLRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPE DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFF PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLS TKSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARE LAKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADT CPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIE KAKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIAR ASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKT LDELKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALHHL RSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIARRMNISNLWSKPPIEEGDEPEDRGG CPKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERN GKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGL VTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVS PSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPE GTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPG DCGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPTL GPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTE PRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDY WSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSD LSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRW DSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPC TSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPERLTAKL KEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRG PNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQ ESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" gene 5084..6706 /gene="VP1" CDS 5084..6706 /gene="VP1" /codon_start=1 /product="capsid protein" /protein_id="ALG05457.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELSPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" gene 6706..7485 /gene="VP2" CDS 6706..7485 /gene="VP2" /codon_start=1 /product="minor capsid protein" /protein_id="ALG05458.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNEQLQSA SFQHDKEMLQAQVKATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSTYTQSA HLTSGSSSNASSASTKLTNLSFGSSLNRTAEGVNQQRSFSPFMRGALSISHVPPPPSR ASSFGTVSPVPKEVLDSWTFAFNTHRQPLFPPLRVRGGSRV" ORIGIN 1 atggtgtcta acgacgcttc cgctgccgtt gctggcaaaa acaacaacaa cgacaaggaa 61 aaatcttcaa gtgacagctt gcttgctaac atgtctgtta cttttaagaa agccctcggg 121 gcgcggtcta aacaaccgcc cccgggagaa acaaaacaaa tacaaaaacc accaaggcca 181 ccgacaccgg aattggtgaa gagagtacct ccacccccac ctaatggcga ggatgaacca 241 gggatagtgt acaaggtggg agagggtgtg tctgggctgc ccgacctaac aactgtggta 301 caacctgacg cacaaaacac agcttatagt gttcccccac ttggccagag agaagtcggc 361 gaagctaaag aaccgctgcc tggctccatt ttggaaatgt gggatggtga gatctaccac 421 tatgggctgt atgttgagcg ggggcatgtg ctcggagtac acaaaccacc tgctgcaata 481 agccttgcca aaattgaaat aacaccgctg tctctctact ggagagtggt ctacactccc 541 cagtacttga tagctccagg aactcttaag aacttgagtg gagagacttt cccatacacg 601 gcctttgaca acaactgtta tgccttctgt tgttgggtcc tagacctcaa cgactcctgg 661 cttagcagga gaatgatcca aagaacaact ggattcttca aaccttacca ggattggaac 721 agaaaaccct taccaaccat ggatgaaccg aaaatcaaga aggccgcgaa tgctgttcta 781 tgcgctctct cctcactctt cactagaccc attaaggaca tcattggaaa gcttagacca 841 ctgaacattc ttaatatact ggcaacctgc gattggactt ttgcaggcat agtggaatcc 901 ttgattcttc ttgctgaact ctttggggtg ttctggacac ccccagatgt gtctgcgatg 961 attgctccct tactcggtga ctacgagatg caaggccccg aagacctggc cgtggaactt 1021 gtgcccgtgg taatgggagg aataggtttg gtgttaggat tcaccaaaga aaagatcggc 1081 aagatgcttt catcagctgc gaccacactt agggcctgca aggatctagg atcttatgga 1141 ttggagatac tcaaattggt catgaagtgg ttcttcccca agaaggagga ggctaacgaa 1201 ctagccatgg tgagggccat tgaggatgca gtcctggatt tggaggcaat agaaaacaat 1261 cacatgacca cccttctcaa ggataaagac agcctggcca catacatgag gactcttgac 1321 ttggaagaag agaaagcaag gaaactgtca accaaatcgg cgtcacctga catcgtgggt 1381 acaataaacg cattattggc taggatagca gccgccaggt cactggtcca caaggctaag 1441 gaggagctct cgagcagaca gagacctgtt gttgtaatga tatcaggtag accaggtata 1501 ggaaagaccc acctggccag agagctagcc aagaaagttg cgtcaacact gtcaggcgac 1561 caaaggattg gactggtacc tagaaatggc gtcgaccatt gggacgccta caagggagaa 1621 agggtggttc tgtgggatga ttatggtatg agcaacccta tacaggacgc actgaggctc 1681 caagaattgg ctgacacctg ccctctgacc ctaaattgtg acaggattga aaacaaagga 1741 aaagtgttcg acagtgatgc cataattata acaaccaacc ttgcaaaccc agcaccacta 1801 gactatgtca actttgaggc ctgctctaga cgcatagact tcttggtgta tgcagacgca 1861 cctgacattg agaaggctaa gcgtgacttc cctggccaac cagatatgtg gaaagaccat 1921 ttcagaccag acttctcaca cattaaactt cagctggcac cacagggagg ttttgacaaa 1981 aatggcaaca ccccacatgg caaaggtgtg gtgaagtccc tgacgattgg ttctctgatc 2041 gccagggcct ctggcttgct ccacgagaga atggatgaat tcgagctcca aggctctgac 2101 ctgccaacct tcaattttga ccgcaacaaa gtcgccgcct tcagacaatt agcagctgaa 2161 aacaaatatg gtcttatgga cacactgagg gtcggcaacc aactgaaaag tgttaagacc 2221 ctggatgagc tgaagcaggc cataaagaac atcagtatca agaagtgtca gatagtgtat 2281 aatggatgca cctataccat ggaatctgat gggaggggca aggttgtggt tgaaaaggta 2341 caaaacgcaa cagttcaaac caacaatgaa cttgtagggg cgctccacca cctgagatct 2401 gcaaggataa gatactatgt taaatgtttc caagaagcca tttactctct actccaaatt 2461 gctggtgcag ccttcgtcac ctcacgcatc gcgaggcgca tgaacatatc aaacctctgg 2521 tcgaagccac ccatcgagga gggtgatgag cctgaagaca gaggaggatg ccccaagccc 2581 agggatgaag atgacctcac tattgactct agagacatta aagtggaagg gaagaagggc 2641 aagaacaagt ctggccgggg caagaaacac acagccttct cttccaaggg cctcagtgat 2701 gaagagtacg atgagtacaa gagaatcaga gaggagagga atggcaaata ctcaatagag 2761 gaatacctcc aagataggga cagatactat gaagagcttg ccattgctaa ggccactgag 2821 gaggacttct gtgaggagga ggagatcaaa atccgccaga gaatcttccg acccaccagg 2881 aagcagcgga aagaggaaag ggccacgctt gggcttgtca caggatcgga aatcagaaag 2941 aggaatccag atgactttaa accaaaagga aaattgtggg ctgatgacaa caggagcgtg 3001 gattacaatg agaggataga ttttgaggct cccccgagtg tttggtctag gatagtcaac 3061 tttggcacag gctggggatt ctgggtctct ccaagtctct ttataacttc aacacacgtc 3121 ataccaaaag gaatcactga ggcctttgga gtgcccataa accaaatcca aattcacaaa 3181 tctggagaat tttgccgctt gcggtttcca aagccaatta gaccagacgt gagtgggatg 3241 atcttggaag agggtgcccc tgaaggcact gttgtgtcta ttctcatcaa aaggacaaca 3301 ggggagctga tgcctcttgc agtcagaatg gggactcacg ccacaatgaa aatccaaggt 3361 agaacggtgg gtggtcagat gggtatgctc ctcactggct caaatgctaa aagcatggat 3421 ctaggcacaa cgccaggtga ctgcggatgt ccatacatat acaaaagggg caatgacctt 3481 gtggtcattg gggtgcacac tgcagcagct cgtggtggca acacggtcat atgtgccaca 3541 cagggaagtg aaggtgaagc cactcttgaa ggaggtgaca acaagggtac ctattgtgga 3601 gcccccactt tgggacctgg caatgcacca aaattaagta caaagacaaa gttctggaga 3661 tcctctaacg caccgcttcc cccaggtact tatgaaccag cataccttgg tgggagagac 3721 ccgcgcgtga agggaggccc atctctgcaa caagttatga gagaccaact taaacctttt 3781 acagagccca gagggaagcc accaaaccca aatgtcttag agtcagcaaa gaagactatc 3841 atcaatgttc tggaacaaac cattgacccc cctcaaaagt ggtcatatgc ccaagcttgt 3901 gcatccctcg acaagacaac ctccagtgga tacccgcacc acgtccggaa gaatgactat 3961 tggagtggtg aatccttcac aggaaaactt gcagatcagg cttcaaaagc aaatctcatg 4021 tatgaggaag gcaagcacat gcaaccagtt tacaccgcag cactcaaaga cgagctcgtg 4081 aaaactgaca aaatttatgg caaaatcaag aaaagactcc tgtggggttc tgacctctcc 4141 acaatgattc gatgcgccag agcatttggt ggtctcatgg atgaattcaa agcaaattgt 4201 attacactcc ccatcagagt tggtatgaat atgaacgaag atggtcccat aatatttgag 4261 aaacactcca ggtacaggta ccactatgat gctgattact cccgctggga ctccacacaa 4321 cagcgggcag tgctggaagc ggcacttgaa atcatggtga gattttctgc tgagccacag 4381 ctggcacaaa tagtggcaga ggacctgctg tcaccaagtg tggttgatgt gggcgatttc 4441 aaaatcgcta tcaatgaagg cctaccatct ggcgtgcctt gcacctcaca atggaattct 4501 attgcccact ggttacttac cttgtgtgcc ctttctgaag tgacaggatt aggtcctgac 4561 atcatacaag ctaactccat gtactctttc tatggtgatg atgagattgt gagcacagac 4621 ataaaattgg acccagagag attgaccgca aagctcaaag aatatggcct taaacccact 4681 cggcccgaca aaactgaggg gccgttggtg attagtgagg acctgaatgg gttgactttc 4741 ctccgccgaa cagtcacccg tgatccagca ggttggtttg gaaagttgga ccaaaactcc 4801 atcctcaggc agttgtactg gacaagagga cccaaccatg aagaccccag tgagaccatg 4861 ataccacacg cacaaagacc tgtgcagctc atggcactac taggagaatc ctccctacat 4921 ggaccctcat tttacagcaa ggttagcaaa ttagtcatat ctgaacttaa agagggagga 4981 atggattttt atgtgcccag acaagagtca atgttcagat ggatgaggtt ctcagatcta 5041 agcacatggg agggcgatcg caatctggct cccagttttg tgaatgaaga tggcgtcgaa 5101 tgacgccgct ccatctaatg atggtgctgc tggtctcgta ccagagggca acaacgagac 5161 ccttccccta gaaccagttg cgggcgcagc tatagccgca cccgtcactg gccaaaataa 5221 cataattgac ccctggatta gaacaaattt tgtgcaagca ccaaatggag agttcacagt 5281 gtcacccaga aactctcctg gagaaatttt attaaactta gagttgagcc ctgatttgaa 5341 cccttatttg gctcatttgt caaggatgta caatgggtat gctggtggag tggaagttca 5401 ggttctcctg gcagggaacg cgttcactgc cggaaagatc ctcttcgccg ccgtcccgcc 5461 aaatttccca gtggaattct taagcccagc ccagatcaca atgctcccac atttaatagt 5521 agatgttagg actcttgaac caattatgat cccactccct gatgttagga atacattctt 5581 ccattatagc aaccagccta acagccgcat gagattagtg gctatgctct ataccccact 5641 cagatctaat ggctcaggtg atgatgtctt tactgtctct tgcagggttt tgactaggcc 5701 tactcctgat tttgagttca cttatttagt gccaccttct gttgaatcta agactaagcc 5761 tttttcctta cctattttaa ccctttctga gctcacaaat tcgaggttcc cagtccccat 5821 cgattcgctt ttcaccgccc agaataatgt gttgcaggtg cagtgtcaaa atggcaggtg 5881 tacacttgat ggtgagttac aaggcacaac ccagttgctc ccatctggca tctgtgcatt 5941 cagaggacgg gtgacagcac aaattaacca acgtgacagg tggcacatgc aactgcaaaa 6001 cctcaatggt acaacatatg acccaactga tgatgtgcca gccccgctgg gcacacctga 6061 cttcaagggc gtcgtgtttg ggatggtaag ccaaagaaat gtgggtaatg atgcgcctgg 6121 ctcaaccaga gcccaacagg cgtgggtttc aacctatagc ccccaatttg tccccaaatt 6181 aggttctgtc aatcttagaa ttagtgataa tgatgatttt caattccagc cgacgaaatt 6241 cacaccagtg ggcgtcaatg atgacgatga tggccacccg ttcagacaat gggaactacc 6301 aaactactca ggggagctta ccttgaatat gaatcttgcc cccccagttg ctccaaattt 6361 tcctggtgaa caattgttat tcttcagatc tttcgtgcca tgctcaggag gttacaacca 6421 aggtattata gattgtctta ttccccaaga atggattcaa cacttctatc aggaatcagc 6481 accctcccag tcagacgtgg ccctaatcag gtatgtcaac cccgatacgg gacgtacact 6541 gtttgaagca aaattgcaca gatctggtta cattactgtg gctcattctg gagactatcc 6601 tcttgttgtt ccggctaatg gacactttag atttgattct tgggtaaatc agttttactc 6661 actcgcccca atgggaactg ggaatgggcg aaggagggct cagtaatggc tggggctttc 6721 attgcaggat tggcaggcga catgctcacg tcatctgtgg gctcccttgt gaacgcagga 6781 gcaaacgcca tcaaccaaaa gatagacttt gaaaacaacg aacaactcca gtctgcttcc 6841 tttcagcatg ataaagagat gctccaagcg caggtgaagg caaccaagca gctgcaatct 6901 gaaatgatag ctctaaaaca gggggttttg gccgcaggcg gcttttcccc cactgatgca 6961 gcaaggggcg ccattggtgc acccatgaca aaggtgcttg actggtctgg cactcgatac 7021 tgggcgccca attccacaaa gacaactggt tattcgggac aattcacctc ttcacctgtg 7081 cacatgtcta gcccaaatgc tccacaatca aaacctgcaa aacctaggtc tctagctcct 7141 tcctcttctt ctagcagtgt ctatagtacg tatactcaat ctgctcattt aacatctggc 7201 tcttctagta atgcttcttc tgcctctaca aaattgacaa atttaagttt tggctcctct 7261 ttaaacagaa cagcagaggg ggtaaatcaa cagagaagtt ttagcccttt catgaggggg 7321 gcacttagca tttcccatgt cccccccccc ccaagtaggg cttccagttt tgggacggtt 7381 tcgcccgtgc ccaaggaagt tttggactcc tggacgtttg cgtttaacac acacagacag 7441 ccgcttttcc cccccctcag agtgaggggg gggtcccgtg tttagtgaaa aaaaaaaatt 7501 ggctataatg tgatttcttt ttaaaatttg gttaatttgt gttttttaaa aa //