Typing tool
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Typing tool
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Complete norovirus genomes
| KR154230 | GII.17 | |
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| GII.P17 |
ORF1: 1..5103
ORF2: 5084..6706
ORF3: 6706..7485
LOCUS KR154230 7552 bp RNA linear VRL 04-OCT-2015
DEFINITION Norovirus Hu/GII.17/CGMH69/2015/TW nonstructural polyprotein
(ORF1), capsid protein (VP1), and minor capsid protein (VP2) genes,
complete cds.
ACCESSION KR154230
VERSION KR154230.1
KEYWORDS .
SOURCE Norovirus Hu/GII.17/CGMH69/2015/TW
ORGANISM Norovirus Hu/GII.17/CGMH69/2015/TW
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7552)
AUTHORS Lee,C.C., Feng,Y., Chen,S.Y., Tsai,C.N., Lai,M.W. and Chiu,C.H.
TITLE Emerging Norovirus GII.17 in Taiwan
JOURNAL Clin. Infect. Dis. (2015) In press
PUBMED 26306886
REMARK Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 7552)
AUTHORS Lee,C.C., Wang,W.L., Chen,S.Y., Tsai,C.N. and Chiu,C.H.
TITLE Direct Submission
JOURNAL Submitted (21-APR-2015) Graduate Institute of Clinical Medical
Science, College of Medicine, Chang Gung University, 259, Wen-Hwa
1st Road, Kwei-Shan, Taoyuan County 333, Taiwan R.O.C.
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7552
/organism="Norovirus Hu/GII.17/CGMH69/2015/TW"
/mol_type="genomic RNA"
/isolate="Hu/GII.17/CGMH69/2015/TW"
/isolation_source="fecal"
/host="Homo sapiens"
/db_xref="taxon:1729654"
/geo_loc_name="Taiwan"
/collection_date="2015"
/note="genotype: GII.17"
gene 1..5103
/gene="ORF1"
CDS 1..5103
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="ALG05456.1"
/translation="MVSNDASAAVAGKNNNNDKEKSSSDSLLANMSVTFKKALGARSK
QPPPGETKQIQKPPRPPTPELVKRVPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQP
DAQNTAYSVPPLGQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAI
SLAKIEITPLSLYWRVVYTPQYLIAPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLND
SWLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIG
KLRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPE
DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFF
PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLS
TKSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARE
LAKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADT
CPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIE
KAKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIAR
ASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKT
LDELKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALHHL
RSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIARRMNISNLWSKPPIEEGDEPEDRGG
CPKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERN
GKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGL
VTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVS
PSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPE
GTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPG
DCGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPTL
GPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTE
PRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDY
WSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSD
LSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRW
DSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPC
TSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPERLTAKL
KEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRG
PNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQ
ESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5084..6706
/gene="VP1"
CDS 5084..6706
/gene="VP1"
/codon_start=1
/product="capsid protein"
/protein_id="ALG05457.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELSPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN
DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6706..7485
/gene="VP2"
CDS 6706..7485
/gene="VP2"
/codon_start=1
/product="minor capsid protein"
/protein_id="ALG05458.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNEQLQSA
SFQHDKEMLQAQVKATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSTYTQSA
HLTSGSSSNASSASTKLTNLSFGSSLNRTAEGVNQQRSFSPFMRGALSISHVPPPPSR
ASSFGTVSPVPKEVLDSWTFAFNTHRQPLFPPLRVRGGSRV"
ORIGIN
1 atggtgtcta acgacgcttc cgctgccgtt gctggcaaaa acaacaacaa cgacaaggaa
61 aaatcttcaa gtgacagctt gcttgctaac atgtctgtta cttttaagaa agccctcggg
121 gcgcggtcta aacaaccgcc cccgggagaa acaaaacaaa tacaaaaacc accaaggcca
181 ccgacaccgg aattggtgaa gagagtacct ccacccccac ctaatggcga ggatgaacca
241 gggatagtgt acaaggtggg agagggtgtg tctgggctgc ccgacctaac aactgtggta
301 caacctgacg cacaaaacac agcttatagt gttcccccac ttggccagag agaagtcggc
361 gaagctaaag aaccgctgcc tggctccatt ttggaaatgt gggatggtga gatctaccac
421 tatgggctgt atgttgagcg ggggcatgtg ctcggagtac acaaaccacc tgctgcaata
481 agccttgcca aaattgaaat aacaccgctg tctctctact ggagagtggt ctacactccc
541 cagtacttga tagctccagg aactcttaag aacttgagtg gagagacttt cccatacacg
601 gcctttgaca acaactgtta tgccttctgt tgttgggtcc tagacctcaa cgactcctgg
661 cttagcagga gaatgatcca aagaacaact ggattcttca aaccttacca ggattggaac
721 agaaaaccct taccaaccat ggatgaaccg aaaatcaaga aggccgcgaa tgctgttcta
781 tgcgctctct cctcactctt cactagaccc attaaggaca tcattggaaa gcttagacca
841 ctgaacattc ttaatatact ggcaacctgc gattggactt ttgcaggcat agtggaatcc
901 ttgattcttc ttgctgaact ctttggggtg ttctggacac ccccagatgt gtctgcgatg
961 attgctccct tactcggtga ctacgagatg caaggccccg aagacctggc cgtggaactt
1021 gtgcccgtgg taatgggagg aataggtttg gtgttaggat tcaccaaaga aaagatcggc
1081 aagatgcttt catcagctgc gaccacactt agggcctgca aggatctagg atcttatgga
1141 ttggagatac tcaaattggt catgaagtgg ttcttcccca agaaggagga ggctaacgaa
1201 ctagccatgg tgagggccat tgaggatgca gtcctggatt tggaggcaat agaaaacaat
1261 cacatgacca cccttctcaa ggataaagac agcctggcca catacatgag gactcttgac
1321 ttggaagaag agaaagcaag gaaactgtca accaaatcgg cgtcacctga catcgtgggt
1381 acaataaacg cattattggc taggatagca gccgccaggt cactggtcca caaggctaag
1441 gaggagctct cgagcagaca gagacctgtt gttgtaatga tatcaggtag accaggtata
1501 ggaaagaccc acctggccag agagctagcc aagaaagttg cgtcaacact gtcaggcgac
1561 caaaggattg gactggtacc tagaaatggc gtcgaccatt gggacgccta caagggagaa
1621 agggtggttc tgtgggatga ttatggtatg agcaacccta tacaggacgc actgaggctc
1681 caagaattgg ctgacacctg ccctctgacc ctaaattgtg acaggattga aaacaaagga
1741 aaagtgttcg acagtgatgc cataattata acaaccaacc ttgcaaaccc agcaccacta
1801 gactatgtca actttgaggc ctgctctaga cgcatagact tcttggtgta tgcagacgca
1861 cctgacattg agaaggctaa gcgtgacttc cctggccaac cagatatgtg gaaagaccat
1921 ttcagaccag acttctcaca cattaaactt cagctggcac cacagggagg ttttgacaaa
1981 aatggcaaca ccccacatgg caaaggtgtg gtgaagtccc tgacgattgg ttctctgatc
2041 gccagggcct ctggcttgct ccacgagaga atggatgaat tcgagctcca aggctctgac
2101 ctgccaacct tcaattttga ccgcaacaaa gtcgccgcct tcagacaatt agcagctgaa
2161 aacaaatatg gtcttatgga cacactgagg gtcggcaacc aactgaaaag tgttaagacc
2221 ctggatgagc tgaagcaggc cataaagaac atcagtatca agaagtgtca gatagtgtat
2281 aatggatgca cctataccat ggaatctgat gggaggggca aggttgtggt tgaaaaggta
2341 caaaacgcaa cagttcaaac caacaatgaa cttgtagggg cgctccacca cctgagatct
2401 gcaaggataa gatactatgt taaatgtttc caagaagcca tttactctct actccaaatt
2461 gctggtgcag ccttcgtcac ctcacgcatc gcgaggcgca tgaacatatc aaacctctgg
2521 tcgaagccac ccatcgagga gggtgatgag cctgaagaca gaggaggatg ccccaagccc
2581 agggatgaag atgacctcac tattgactct agagacatta aagtggaagg gaagaagggc
2641 aagaacaagt ctggccgggg caagaaacac acagccttct cttccaaggg cctcagtgat
2701 gaagagtacg atgagtacaa gagaatcaga gaggagagga atggcaaata ctcaatagag
2761 gaatacctcc aagataggga cagatactat gaagagcttg ccattgctaa ggccactgag
2821 gaggacttct gtgaggagga ggagatcaaa atccgccaga gaatcttccg acccaccagg
2881 aagcagcgga aagaggaaag ggccacgctt gggcttgtca caggatcgga aatcagaaag
2941 aggaatccag atgactttaa accaaaagga aaattgtggg ctgatgacaa caggagcgtg
3001 gattacaatg agaggataga ttttgaggct cccccgagtg tttggtctag gatagtcaac
3061 tttggcacag gctggggatt ctgggtctct ccaagtctct ttataacttc aacacacgtc
3121 ataccaaaag gaatcactga ggcctttgga gtgcccataa accaaatcca aattcacaaa
3181 tctggagaat tttgccgctt gcggtttcca aagccaatta gaccagacgt gagtgggatg
3241 atcttggaag agggtgcccc tgaaggcact gttgtgtcta ttctcatcaa aaggacaaca
3301 ggggagctga tgcctcttgc agtcagaatg gggactcacg ccacaatgaa aatccaaggt
3361 agaacggtgg gtggtcagat gggtatgctc ctcactggct caaatgctaa aagcatggat
3421 ctaggcacaa cgccaggtga ctgcggatgt ccatacatat acaaaagggg caatgacctt
3481 gtggtcattg gggtgcacac tgcagcagct cgtggtggca acacggtcat atgtgccaca
3541 cagggaagtg aaggtgaagc cactcttgaa ggaggtgaca acaagggtac ctattgtgga
3601 gcccccactt tgggacctgg caatgcacca aaattaagta caaagacaaa gttctggaga
3661 tcctctaacg caccgcttcc cccaggtact tatgaaccag cataccttgg tgggagagac
3721 ccgcgcgtga agggaggccc atctctgcaa caagttatga gagaccaact taaacctttt
3781 acagagccca gagggaagcc accaaaccca aatgtcttag agtcagcaaa gaagactatc
3841 atcaatgttc tggaacaaac cattgacccc cctcaaaagt ggtcatatgc ccaagcttgt
3901 gcatccctcg acaagacaac ctccagtgga tacccgcacc acgtccggaa gaatgactat
3961 tggagtggtg aatccttcac aggaaaactt gcagatcagg cttcaaaagc aaatctcatg
4021 tatgaggaag gcaagcacat gcaaccagtt tacaccgcag cactcaaaga cgagctcgtg
4081 aaaactgaca aaatttatgg caaaatcaag aaaagactcc tgtggggttc tgacctctcc
4141 acaatgattc gatgcgccag agcatttggt ggtctcatgg atgaattcaa agcaaattgt
4201 attacactcc ccatcagagt tggtatgaat atgaacgaag atggtcccat aatatttgag
4261 aaacactcca ggtacaggta ccactatgat gctgattact cccgctggga ctccacacaa
4321 cagcgggcag tgctggaagc ggcacttgaa atcatggtga gattttctgc tgagccacag
4381 ctggcacaaa tagtggcaga ggacctgctg tcaccaagtg tggttgatgt gggcgatttc
4441 aaaatcgcta tcaatgaagg cctaccatct ggcgtgcctt gcacctcaca atggaattct
4501 attgcccact ggttacttac cttgtgtgcc ctttctgaag tgacaggatt aggtcctgac
4561 atcatacaag ctaactccat gtactctttc tatggtgatg atgagattgt gagcacagac
4621 ataaaattgg acccagagag attgaccgca aagctcaaag aatatggcct taaacccact
4681 cggcccgaca aaactgaggg gccgttggtg attagtgagg acctgaatgg gttgactttc
4741 ctccgccgaa cagtcacccg tgatccagca ggttggtttg gaaagttgga ccaaaactcc
4801 atcctcaggc agttgtactg gacaagagga cccaaccatg aagaccccag tgagaccatg
4861 ataccacacg cacaaagacc tgtgcagctc atggcactac taggagaatc ctccctacat
4921 ggaccctcat tttacagcaa ggttagcaaa ttagtcatat ctgaacttaa agagggagga
4981 atggattttt atgtgcccag acaagagtca atgttcagat ggatgaggtt ctcagatcta
5041 agcacatggg agggcgatcg caatctggct cccagttttg tgaatgaaga tggcgtcgaa
5101 tgacgccgct ccatctaatg atggtgctgc tggtctcgta ccagagggca acaacgagac
5161 ccttccccta gaaccagttg cgggcgcagc tatagccgca cccgtcactg gccaaaataa
5221 cataattgac ccctggatta gaacaaattt tgtgcaagca ccaaatggag agttcacagt
5281 gtcacccaga aactctcctg gagaaatttt attaaactta gagttgagcc ctgatttgaa
5341 cccttatttg gctcatttgt caaggatgta caatgggtat gctggtggag tggaagttca
5401 ggttctcctg gcagggaacg cgttcactgc cggaaagatc ctcttcgccg ccgtcccgcc
5461 aaatttccca gtggaattct taagcccagc ccagatcaca atgctcccac atttaatagt
5521 agatgttagg actcttgaac caattatgat cccactccct gatgttagga atacattctt
5581 ccattatagc aaccagccta acagccgcat gagattagtg gctatgctct ataccccact
5641 cagatctaat ggctcaggtg atgatgtctt tactgtctct tgcagggttt tgactaggcc
5701 tactcctgat tttgagttca cttatttagt gccaccttct gttgaatcta agactaagcc
5761 tttttcctta cctattttaa ccctttctga gctcacaaat tcgaggttcc cagtccccat
5821 cgattcgctt ttcaccgccc agaataatgt gttgcaggtg cagtgtcaaa atggcaggtg
5881 tacacttgat ggtgagttac aaggcacaac ccagttgctc ccatctggca tctgtgcatt
5941 cagaggacgg gtgacagcac aaattaacca acgtgacagg tggcacatgc aactgcaaaa
6001 cctcaatggt acaacatatg acccaactga tgatgtgcca gccccgctgg gcacacctga
6061 cttcaagggc gtcgtgtttg ggatggtaag ccaaagaaat gtgggtaatg atgcgcctgg
6121 ctcaaccaga gcccaacagg cgtgggtttc aacctatagc ccccaatttg tccccaaatt
6181 aggttctgtc aatcttagaa ttagtgataa tgatgatttt caattccagc cgacgaaatt
6241 cacaccagtg ggcgtcaatg atgacgatga tggccacccg ttcagacaat gggaactacc
6301 aaactactca ggggagctta ccttgaatat gaatcttgcc cccccagttg ctccaaattt
6361 tcctggtgaa caattgttat tcttcagatc tttcgtgcca tgctcaggag gttacaacca
6421 aggtattata gattgtctta ttccccaaga atggattcaa cacttctatc aggaatcagc
6481 accctcccag tcagacgtgg ccctaatcag gtatgtcaac cccgatacgg gacgtacact
6541 gtttgaagca aaattgcaca gatctggtta cattactgtg gctcattctg gagactatcc
6601 tcttgttgtt ccggctaatg gacactttag atttgattct tgggtaaatc agttttactc
6661 actcgcccca atgggaactg ggaatgggcg aaggagggct cagtaatggc tggggctttc
6721 attgcaggat tggcaggcga catgctcacg tcatctgtgg gctcccttgt gaacgcagga
6781 gcaaacgcca tcaaccaaaa gatagacttt gaaaacaacg aacaactcca gtctgcttcc
6841 tttcagcatg ataaagagat gctccaagcg caggtgaagg caaccaagca gctgcaatct
6901 gaaatgatag ctctaaaaca gggggttttg gccgcaggcg gcttttcccc cactgatgca
6961 gcaaggggcg ccattggtgc acccatgaca aaggtgcttg actggtctgg cactcgatac
7021 tgggcgccca attccacaaa gacaactggt tattcgggac aattcacctc ttcacctgtg
7081 cacatgtcta gcccaaatgc tccacaatca aaacctgcaa aacctaggtc tctagctcct
7141 tcctcttctt ctagcagtgt ctatagtacg tatactcaat ctgctcattt aacatctggc
7201 tcttctagta atgcttcttc tgcctctaca aaattgacaa atttaagttt tggctcctct
7261 ttaaacagaa cagcagaggg ggtaaatcaa cagagaagtt ttagcccttt catgaggggg
7321 gcacttagca tttcccatgt cccccccccc ccaagtaggg cttccagttt tgggacggtt
7381 tcgcccgtgc ccaaggaagt tttggactcc tggacgtttg cgtttaacac acacagacag
7441 ccgcttttcc cccccctcag agtgaggggg gggtcccgtg tttagtgaaa aaaaaaaatt
7501 ggctataatg tgatttcttt ttaaaatttg gttaatttgt gttttttaaa aa
//