Typing tool
|
Complete norovirus genomes
KR083017 | GII.17 | ||
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GII.P17 |
ORF1: 1..5078 ORF2: 5059..6681 ORF3: 6681..7460LOCUS KR083017 7527 bp RNA linear VRL 31-MAY-2015 DEFINITION Norovirus Hu/GII.17/Gaithersburg/2014/US nonstructural polyprotein (ORF1) gene, partial cds; and major capsid protein VP1 (ORF2) and minor capsid protein VP2 (ORF3) genes, complete cds. ACCESSION KR083017 VERSION KR083017.1 KEYWORDS . SOURCE Norovirus Hu/GII.17/Gaithersburg/2014/US ORGANISM Norovirus Hu/GII.17/Gaithersburg/2014/US Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7527) AUTHORS Parra,G.I. and Green,K.Y. TITLE Genome of Emerging Norovirus GII.17, United States, 2014 JOURNAL Emerging Infect. Dis. 21 (8), 1477-1479 (2015) PUBMED 26196235 REFERENCE 2 (bases 1 to 7527) AUTHORS Parra,G.I. and Green,K.Y. TITLE Direct Submission JOURNAL Submitted (10-APR-2015) LID, NIAID, NIH, 50 South Drive, BLD 50, Room 6316, Bethesda, MD 20892, USA COMMENT ##Assembly-Data-START## Assembly Method :: Bowtie v. 2; Sequencher v. 5 Sequencing Technology :: IonTorrent; Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7527 /organism="Norovirus Hu/GII.17/Gaithersburg/2014/US" /mol_type="genomic RNA" /isolate="Hu/GII.17/Gaithersburg/2014/US" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:1658673" /country="USA" /collection_date="25-Nov-2014" /note="genotype: GII.17" gene <1..5078 /gene="ORF1" CDS <1..5078 /gene="ORF1" /codon_start=3 /product="nonstructural polyprotein" /protein_id="AKI30059.1" /translation="VAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSKQPPPGETKQ IQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQPDAQNTAYSV PPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAKIEITP LSLYWRVVYTPQYLIAPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQ RTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKLRPLNILN ILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLAVELVPV VMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEANEL AMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIV GTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVASTL SGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNCDR IENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFPGQ PDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARASGLLHERM DEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKNVKTLDELKQAIK NISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALHHLRSARIRYYV KCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCPKPRDEDD LTIDSRDIRVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYL QDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKR NPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITSTH VIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSILIK RTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYK RGSDLVVIGVHTAAARGGNTIICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPKLS TKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPNPN VLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFTGK LADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCAR AFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVL EAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQWNSIAH WLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTR PDKTEGPLVVSEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPSET MIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMRF SDLSTWEGDRNLAPSFVNEDGVE" gene 5059..6681 /gene="ORF2" CDS 5059..6681 /gene="ORF2" /codon_start=1 /product="major capsid protein VP1" /protein_id="AKI30060.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSINLRISDNDDFQFQPTKFTPVGVN DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" gene 6681..7460 /gene="ORF3" CDS 6681..7460 /gene="ORF3" /codon_start=1 /product="minor capsid protein VP2" /protein_id="AKI30061.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVKATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV" ORIGIN 1 ccgttgctgg caaaaacaac aacaacgaca aggaaaaatc ttcaagtgac agcttgtttg 61 ctaacatgtc tgttactttt aagaaagccc tcggggcgcg gtctaaacaa ccgcccccgg 121 gagaaacaaa acaaatacaa aaaccaccaa ggccaccgac accggaattg gtgaagagaa 181 tacctccacc cccacccaat ggcgaggatg aaccagggat agtgtacaag gtgggagagg 241 gtgtgtctgg gctgcccgac ctaacaactg tggtacaacc tgacgcacag aacacagctt 301 atagtgttcc cccacttagc cagagagaag tcggcgaagc taaagaaccg ctgcctggct 361 ccattctgga aatgtgggat ggtgagatct accactatgg gctgtatgtt gagcgggggc 421 atgtgctcgg agtacacaaa ccacctgctg caataagcct tgccaaaatt gaaataacac 481 cactgtctct ctactggaga gtggtctaca ctccccagta tttgatagct ccaggaactc 541 ttaagaactt gagtggagag actttcccat acacggcctt tgacaacaac tgttatgcct 601 tctgttgttg ggtcctagac ctcaacgact cctggcttag caggagaatg atccaaagaa 661 caactggatt cttcaaacct tatcaggatt ggaacagaaa acccttacca accatggatg 721 aaccgaaaat caagaaggcc gcgaatgctg ttctatgcgc tctctcctca ctcttcacta 781 gacccattaa ggacatcatt ggaaagctta gaccactgaa cattcttaat atactggcaa 841 cctgcgattg gacttttgca ggcatagtgg aatccttgat ccttcttgct gaactctttg 901 gggtgttctg gacaccccca gatgtgtctg cgatgattgc tcccttactc ggtgactacg 961 agatgcaagg ccccgaagac ctggccgtgg aacttgtgcc cgtggtgatg ggaggaatag 1021 gtttggtgtt aggattcacc aaagaaaaga tcggcaagat gctttcatca gcagcaacca 1081 cacttagggc ctgcaaggat ctaggatctt atggattgga gatactcaaa ttggtcatga 1141 agtggttctt ccccaagaag gaggaggcta acgaactagc catggtgaga gccattgagg 1201 atgcagtcct ggatttggag gcaatagaaa acaatcacat gaccaccctt ctcaaggata 1261 aagacagcct ggccacatac atgaggactc ttgacttgga agaagagaaa gcaaggaaac 1321 tgtcaaccaa atcggcgtca cctgacatcg tgggtacaat aaacgcatta ttggctagga 1381 tagcagccgc caggtcactg gtccacaagg ctaaggagga gctctcgagc agacagagac 1441 ctgttgttgt aatgatatca ggtagaccag gtataggaaa gacccatctg gccagagagc 1501 tagccaagaa agttgcgtca acactgtcag gcgaccaaag gattggactg gtacctagaa 1561 atggcgtcga ccattgggac gcctacaagg gagaaagggt ggttctgtgg gatgattatg 1621 gtatgagcaa ccctatacag gacgcactga ggctccaaga attggctgac acctgtcctc 1681 tgaccctaaa ttgtgacagg attgaaaaca aaggaaaagt gttcgacagt gatgccataa 1741 ttataacaac caaccttgca aacccagcac cactagacta tgtcaacttt gaggcctgct 1801 ctagacgcat agacttcttg gtgtatgcag acgcacctga cattgagaag gctaagcgtg 1861 acttccctgg ccaaccagat atgtggaaag accatttcag accagacttc tcacacatta 1921 aacttcagct ggcaccacag ggaggttttg acaaaaatgg caacacccca catggcaaag 1981 gtgtggtgaa gtccctgacg attggttctc tgatcgccag ggcctctggc ttgctccacg 2041 agagaatgga tgaattcgag ctccaaggct ctgacctgcc aaccttcaat tttgaccgca 2101 acaaagtcgc cgccttcaga caattagcag ctgaaaacaa atatggtctt atggacacgc 2161 tgagggtcgg caaccaactg aaaaatgtta agaccctgga tgagctgaag caggccataa 2221 agaacatcag tatcaagaag tgtcagatag tgtataatgg atgcacctat accatggaat 2281 ctgatgggag gggcaaggtt gtggttgaaa aggtacaaaa cgcaacagtt caaaccaaca 2341 atgaacttgt aggggcgctc caccacctga gatctgcaag gataaggtac tatgttaaat 2401 gtttccaaga agccatttac tctctactcc aaattgctgg tgcagccttc gtcacctcac 2461 gcatcgtgag gcgcatgaac atatcaaacc tctggtcgaa gccacccatc gaggagggtg 2521 atgagcctga agacagagga ggatgcccca agcccaggga tgaagatgac ctcactattg 2581 actctagaga cattagagtg gaagggaaga agggcaagaa caagtctggc cggggcaaga 2641 aacacacagc cttctcttcc aagggcctca gtgatgaaga gtacgatgag tacaagagaa 2701 tcagagagga gaggaatggc aaatactcaa tagaggaata cctccaagat agggacagat 2761 actatgaaga gcttgccatt gctaaggcca ctgaggagga cttctgtgag gaggaggaga 2821 tcaaaatccg ccagagaatc ttccgaccca ccaggaagca gcggaaagag gaaagggcca 2881 cgcttgggct tgtcacagga tcggaaatca gaaagaggaa tccagatgac tttaaaccaa 2941 aaggaaaatt gtgggctgat gacaacagga gcgtggatta caatgagagg atagattttg 3001 aggctccccc gagtgtttgg tctaggatag tcaactttgg cacaggctgg ggattctggg 3061 tttctccaag tctctttata acttcaacac atgtcatacc aaaaggaatc actgaggcct 3121 ttggagtgcc tataaaccaa atccaaattc acaaatctgg agaattttgc cgcttgcggt 3181 ttccaaagcc aattaggcca gacgtgagtg ggatgatctt ggaagagggt gcccctgaag 3241 gcactgttgt gtctattctc atcaaaagga caacagggga gctgatgcct cttgcagtca 3301 gaatggggac tcatgccaca atgaaaatcc aaggtagaac ggtgggtggt cagatgggta 3361 tgcttctcac tggctcaaat gctaaaagca tggatctagg cacaacgcca ggtgactgcg 3421 gatgtccata catatacaaa aggggcagtg accttgtggt cattggggtg cacactgcag 3481 cagctcgtgg aggcaacacg atcatatgtg ccacacaggg aagtgaaggt gaagccactc 3541 ttgaaggagg tgacaacaag ggtacctatt gtggagcccc cattttggga cctggcaatg 3601 caccaaaatt gagcacaaag acaaaattct ggagatcctc taacgcaccg cttcccccag 3661 gtacttatga accagcatac cttggtggga gagacccgcg cgtgaaggga ggtccatctc 3721 tgcaacaagt tatgagagac caacttaagc cttttacaga gcccagaggg aagccaccaa 3781 acccaaatgt cttagagtca gcaaagaaga ctatcatcaa tgttctggaa caaaccattg 3841 acccccctca aaagtggtca tatgcccaag cctgtgcatc cctcgacaag acaacctcca 3901 gtggataccc gcaccacgtc cggaagaatg actattggag tggtgaatcc ttcacaggaa 3961 aacttgcaga tcaggcttca aaagcaaatc tcatgtatga ggaaggcaag cacatgcaac 4021 cagtttacac cgcagcactc aaagacgagc tcgtgaaaac tgataaaatt tatggcaaaa 4081 tcaagaaaag actcctgtgg ggttctgacc tctccacaat gattcgatgc gccagagcat 4141 ttggtggtct catggatgaa ttcaaagcaa attgtattac actccctatc agagttggta 4201 tgaatatgaa tgaagatggt cccataatat ttgagaaaca ctccaggtac aggtaccact 4261 atgatgctga ttactcccgc tgggactcca cacaacagcg ggcagtgctg gaagcggcac 4321 ttgaaatcat ggtgagattt tctgctgagc cacagctggc acaaatagtg gcagaggacc 4381 tgctgtcacc aagtgtggtt gatgtgggcg atttcaaaat cgctatcaat gaaggcctac 4441 catctggcgt gccttgcacc tcacaatgga attctattgc ccactggtta cttaccttgt 4501 gtgccctttc tgaagtgaca ggattaggtc ctgacatcat acaagctaac tccatgtact 4561 ctttctatgg tgatgatgag attgtgagca cagacataaa attggaccca gagaaattga 4621 ccgcaaagct caaagaatat ggccttaaac ccactcggcc cgacaaaact gaggggccgt 4681 tggtggttag tgaagacctg aatgggttga ctttcctccg ccgaacagtc acccgtgatc 4741 cagcaggttg gtttggaaag ttggaccaaa actccatcct caggcagttg tactggacaa 4801 gaggacccaa ccatgaagac cccagtgaga ccatgatacc acacgcacaa agacctgtgc 4861 agctcatggc actactagga gaatcctccc tacatggacc ctcattttac agcaaggtta 4921 gcaaattagt catatctgaa cttaaagagg gaggaatgga tttttatgtg cccagacaag 4981 agtcaatgtt cagatggatg aggttctcag atctaagcac atgggagggc gatcgcaatc 5041 tggctcccag ttttgtgaat gaagatggcg tcgaatgacg ccgctccatc taatgatggt 5101 gctgctggtc tcgtaccaga gggcaacaac gagacccttc ccctagaacc agttgcgggc 5161 gcagctatag ccgcacccgt cactggccaa aataacataa ttgacccctg gattagaaca 5221 aattttgtgc aagcaccaaa tggagagttc acagtgtcac ccagaaactc tcctggagaa 5281 attttattaa acttagagtt gggccctgat ttgaaccctt atttggctca tttgtcaagg 5341 atgtacaatg ggtatgctgg tggagtggaa gttcaggttc tcctggcagg gaacgcgttc 5401 actgccggaa agatcctctt cgccgccgtc ccgccaaatt tcccagtgga attcttaagc 5461 ccagcccaga tcacaatgct cccacattta atagtagatg ttaggactct tgaaccaatt 5521 atgatcccac tccctgatgt taggaataca ttcttccatt atagtaacca gcctaacagc 5581 cgcatgagat tagtggctat gctctatacc ccgctcagat ctaatggctc aggtgatgat 5641 gtctttactg tctcttgcag ggttttgact aggcctactc ctgattttga gttcacttat 5701 ttagtgccac cttctgttga atctaaaact aagccttttt ctttacctat tttaaccctt 5761 tctgagctca caaattcgag gttcccagtc cccatcgatt cgcttttcac cgcccagaat 5821 aatgtgttgc aggtgcagtg tcaaaatggc aggtgtacac ttgatggtga gttacaaggc 5881 acaacccagt tgctcccatc tggcatctgt gcattcagag gacgggtgac agcacaaatt 5941 aaccaacgtg acaggtggca catgcaactg caaaacctca atggtacaac atatgaccca 6001 actgatgatg tgccagcccc gctgggtaca cctgacttca agggcgtcgt gtttgggatg 6061 gtaagccaaa gaaatgtggg taatgatgcg cctggctcaa ccagagccca acaggcgtgg 6121 gtttcaacct atagccccca atttgtcccc aaattaggtt ctatcaatct tagaattagt 6181 gacaatgatg atttccaatt ccagccgaca aaattcacac cagtgggcgt caatgatgac 6241 gatgatggcc acccgttcag acaatgggaa ttaccaaact attcagggga gcttaccttg 6301 aatatgaatc ttgccccccc agttgctcca aatttccctg gtgaacaatt gttattcttt 6361 agatctttcg tgccatgctc aggaggttac aaccaaggta ttatagattg tcttattccc 6421 caagaatgga tccaacactt ctatcaggaa tcagcaccct cccagtcaga cgtggcccta 6481 atcaggtatg tcaaccctga tacgggacgt acactgtttg aagcaaaatt gcacagatct 6541 ggttacatta ctgtggctca ctctggagac tatcctcttg ttgttccggc taatggacac 6601 tttagatttg attcttgggt aaatcagttt tactcactcg ccccaatggg aactgggaat 6661 gggcgaagga gggctcagta atggctgggg ctttcattgc aggattggca ggcgacatgc 6721 tcacgtcatc tgtgggctcc cttgtgaacg caggggcaaa cgccatcaac caaaagatag 6781 actttgaaaa caacaaacaa ctccagtctg cttcctttca gcatgataaa gagatgctcc 6841 aagcgcaggt gaaggcaacc aagcagctgc aatctgaaat gatagcccta aaacaggggg 6901 ttttggccgc aggcggcttt tcccccactg atgcagcaag gggagccatt ggtgcaccca 6961 tgacaaaggt gcttgactgg tctggcactc gatactgggc gcccaactcc acaaagacaa 7021 ctggttattc gggacaattc acctcttcac ctgtgcacat gtctagccca aatgctccac 7081 aatcaaaacc tgcaaagcct aggtctctag ctccttcctc ttcttctagc agtgtctata 7141 gtatgtacac tcaatctact catttaacat ctggctcttc tagtaatgct tcttctgcct 7201 ctacaaaatt gacaaattta agctctggct cctctcaaaa cagaacagca gagtgggtaa 7261 accaacagag aagtcttagc cctttcatga gtggcgcact taacatctca catgtcacgc 7321 caccctcaag tagggcttcc agttctggga cggtctcgac cgtgcccaag gaagttttgg 7381 actcctggac gtctgcgttt aacacacaca gacagccgct cttcgcacac ctcagagtga 7441 ggggggagtc acgtgtttag tgaaaagaaa taattggcta taatgtgatt tctttctaaa 7501 atttggctaa tttgtgtctt ttaaaaa //