Typing tool
|
Complete norovirus genomes
KR052022 | GII.17 | ||
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GII.P17 |
ORF1: 1..1450 ORF2: 1431..3053 ORF3: 3053..3832LOCUS KR052022 3881 bp RNA linear VRL 01-MAY-2016 DEFINITION Norovirus Hu/GII.17/Yunlin/15-R-4/2015/TW non-structural protein gene, partial cds; and major structural protein and minor structural protein genes, complete cds. ACCESSION KR052022 VERSION KR052022.1 KEYWORDS . SOURCE Norovirus Hu/GII.17/Yunlin/15-R-4/2015/TW ORGANISM Norovirus Hu/GII.17/Yunlin/15-R-4/2015/TW Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3881) AUTHORS Wu,F.-T., Chang,C.-Y., Wu,C.-Y. and Lu,C.-T. TITLE Norovirus GII.17 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3881) AUTHORS Wu,F.-T., Chang,C.-Y., Wu,C.-Y. and Lu,C.-T. TITLE Direct Submission JOURNAL Submitted (01-APR-2015) Centers for Disease Control department of health Taiwain, R.O.C., Center for Research and Diagnostics, No. 161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C. FEATURES Location/Qualifiers source 1..3881 /organism="Norovirus Hu/GII.17/Yunlin/15-R-4/2015/TW" /mol_type="genomic RNA" /isolate="Hu/GII.17/Yunlin/15-R-4/2015/TW" /isolation_source="stool specimen from a 15-year male with diarrhea" /host="Homo sapiens" /db_xref="taxon:1692153" /country="Taiwan" /collection_date="Jan-2015" CDS <1..1450 /note="ORF1" /codon_start=2 /product="non-structural protein" /protein_id="ALC78359.1" /translation="WRPSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTE PRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYVQACASLDKTTSSGYPHHVRKNDY WSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSD LSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRW DSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPC TSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKL KEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRG PNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQ ESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 1431..3053 /note="VP1" /codon_start=1 /product="major structural protein" /protein_id="ALC78360.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" CDS 3053..3832 /note="VP2" /codon_start=1 /product="minor structural protein" /protein_id="ALC78361.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV" ORIGIN 1 ctggagaccc tctaacgcac cgcttccccc aggtacttat gaaccagcat accttggtgg 61 gagagacccg cgcgtgaagg gaggcccatc tctgcaacaa gttatgagag accaacttaa 121 accttttaca gagcccagag ggaagccacc aaacccaaat gtcttagagt cagcaaagaa 181 gactatcatc aatgttctgg aacaaaccat tgacccccct caaaagtggt catatgtcca 241 agcttgtgca tccctcgaca agacaacctc cagtggatac ccgcaccacg tccggaagaa 301 tgactattgg agtggtgaat ccttcacagg aaaacttgca gatcaggctt caaaagcaaa 361 tctcatgtat gaggaaggca agcacatgca accagtttac accgcagcac tcaaagacga 421 gctcgtgaaa actgacaaaa tttatggaaa aatcaagaaa agactcctgt ggggttctga 481 cctctccaca atgattcgat gcgccagagc atttggtggt ctcatggatg aattcaaagc 541 aaattgtatt acactcccta tcagagttgg tatgaatatg aatgaagatg gtcccataat 601 atttgagaaa cactccaggt acaggtacca ctatgatgct gattactccc gctgggactc 661 cacacaacag cgggcagtgc tggaagcggc acttgaaatc atggtgaggt tttctgctga 721 gccacagctg gcacaaatag tggcagagga cctgctgtca ccaagtgtgg ttgatgtggg 781 cgatttcaaa atcgctatca atgaaggcct accatctggc gtgccttgca cctcacaatg 841 gaattctatt gcccactggt tacttacctt gtgtgccctt tctgaagtga caggattagg 901 tcctgacatc atacaagcta actccatgta ctctttctat ggtgatgatg agattgtgag 961 cacagacata aaattggacc cagagaaatt gaccgcaaag ctcaaagaat atggccttaa 1021 acccactcgg cccgacaaaa ctgaggggcc gttggtgatt agtgaggacc tgaatgggtt 1081 gactttcctc cgccgaacag tcacccgtga tccagcaggt tggtttggaa agttggacca 1141 aaactccatc ctcaggcagt tgtactggac aagaggaccc aaccatgaag accccagtga 1201 gaccatgata ccacatgcac aaagacctgt gcagctcatg gcactactag gagaatcctc 1261 cctacatgga ccctcatttt acagcaaggt tagcaaatta gtcatatctg aacttaaaga 1321 gggaggaatg gatttttatg tgcccagaca agagtcaatg ttcagatgga tgaggttctc 1381 agatctaagc acatgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg 1441 cgtcgaatga cgccgctcca tctaatgatg gtgctgctgg tctcgtacca gagggcaaca 1501 acgagaccct tcccctagaa ccagttgcgg gcgcagctat agccgcaccc gtcactggcc 1561 aaaataatat aattgacccc tggattagaa caaattttgt gcaagcacca aatggagagt 1621 tcacagtgtc acccagaaac tctcctggag aaattttatt aaatttagag ttgggccctg 1681 atctgaaccc ttatttggct catttgtcaa ggatgtacaa tgggtatgct ggtggagtgg 1741 aagttcaggt tctcctggca gggaacgcgt tcactgccgg aaagatcctc ttcgccgccg 1801 tcccgccaaa cttcccagtg gaattcttaa gcccagccca gatcacaatg ctcccacatt 1861 taatagtaga tgttaggact cttgaaccaa ttatgatccc actccctgat gttaggaata 1921 cattcttcca ttatagtaac cagcctaaca gccgcatgag attagtggct atgctctata 1981 ccccactcag atctaatggc tcaggtgatg atgtctttac tgtctcttgc agggttttga 2041 ctaggcctac tcctgatttt gagttcactt atttagtgcc accttctgtt gaatctaaaa 2101 ctaagccttt ttccttacct attttaaccc tttctgagct cacaaattcg aggtttccag 2161 tccccatcga ttcgcttttc accgcccaga ataatgtgtt gcaggtgcag tgtcaaaatg 2221 gcaggtgtac acttgatggt gagttacaag gcacaaccca gttgctccca actggcatct 2281 gtgcattcag aggacgggtg acagcacaaa ttaaccaacg tgacaggtgg cacatgcaac 2341 tgcaaaacct caatggtaca acatatgacc caactgatga tgtgccagcc ccgctgggta 2401 cacctgactt caagggcgtc gtgtttggga tggtaagcca aagaaatgtg ggtaatgatg 2461 cgcctggctc aaccagagcc caacaggcgt gggtttcaac ctatagcccc caatttgtcc 2521 ccaaattagg ttctgtcaat cttagaatta gtgataatga tgatttccaa ttccagccga 2581 caaaattcac accagtgggc gtcaatgatg acgatgatgg ccacccgttc agacaatggg 2641 aactaccaaa ctattcaggg gagcttacct tgaatatgaa tcttgccccc ccagttgctc 2701 caaattttcc tggtgaacaa ttgttattct tcagatcttt cgtgccatgc tcaggaggtt 2761 acaaccaagg tattatagat tgtcttattc cccaagaatg gatccaacac ttctatcagg 2821 aatcagcacc ctcccagtca gatgtggccc taatcaggta tgtcaacccc gatacgggac 2881 gtacactgtt tgaagcaaaa ttgcacagat ctggttacat tactgtggct cactctggag 2941 actatcctct tgttgttccg gctaatggac actttagatt tgattcttgg gtaaatcagt 3001 tttactcact cgccccaatg ggaactggga atgggcgaag gagggctcag taatggctgg 3061 ggctttcatt gcaggattgg caggcgacat gctcacgtca tctgtgggct cccttgtgaa 3121 cgcaggggca aacgccatca accaaaagat agactttgaa aacaacaaac aactccagtc 3181 tgcttccttt cagcatgata aagagatgct ccaagcgcag gtgagggcaa ccaagcagct 3241 gcaatctgaa atgatagccc taaaacaggg ggttttggcc gcaggcggct tttcccccac 3301 tgatgcagca aggggatcca ttggtgcacc catgacaaag gtgcttgact ggtctggcac 3361 tcggtactgg gcgcccaatt ccacaaagac aactggctat tcgggacaat tcacctcttc 3421 acctgtgcat atgtctagcc caaatgctcc acaatcaaaa cctgcaaagc ctaggtctct 3481 agctccttcc tcttcttcta gcagtgtcta tagtatgtat actcaatcta ctcatttaac 3541 atctggctct tctagtaatg cttcttctgc ctccacaaaa ttgacaaatt taagctctgg 3601 ctcctctcaa aacagaacag cagagtgggt aaatcaacag agaagtctta gccctttcat 3661 gagtggcgca cttaacatct cacatgtcac gccaccctca agtagggctt ccagttctgg 3721 gacggtctcg accgtgccca aggaagtttt ggactcctgg acgtctgcgt ttaacacaca 3781 cagacagccg ctcttcgcac acctcagagt gaggggggag tcacgtgttt agtgaaaaga 3841 aataattggc tataatgtga tttctttcta aagcttggaa t //