Typing tool
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Typing tool
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Complete norovirus genomes
| KR052022 | GII.17 | |
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| GII.P17 |
ORF1: 1..1450
ORF2: 1431..3053
ORF3: 3053..3832
LOCUS KR052022 3881 bp RNA linear VRL 01-MAY-2016
DEFINITION Norovirus Hu/GII.17/Yunlin/15-R-4/2015/TW non-structural protein
gene, partial cds; and major structural protein and minor
structural protein genes, complete cds.
ACCESSION KR052022
VERSION KR052022.1
KEYWORDS .
SOURCE Norovirus Hu/GII.17/Yunlin/15-R-4/2015/TW
ORGANISM Norovirus Hu/GII.17/Yunlin/15-R-4/2015/TW
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 3881)
AUTHORS Wu,F.-T., Chang,C.-Y., Wu,C.-Y. and Lu,C.-T.
TITLE Norovirus GII.17
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3881)
AUTHORS Wu,F.-T., Chang,C.-Y., Wu,C.-Y. and Lu,C.-T.
TITLE Direct Submission
JOURNAL Submitted (01-APR-2015) Centers for Disease Control department of
health Taiwain, R.O.C., Center for Research and Diagnostics, No.
161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..3881
/organism="Norovirus Hu/GII.17/Yunlin/15-R-4/2015/TW"
/mol_type="genomic RNA"
/isolate="Hu/GII.17/Yunlin/15-R-4/2015/TW"
/isolation_source="stool specimen from a 15-year male with
diarrhea"
/host="Homo sapiens"
/db_xref="taxon:1692153"
/geo_loc_name="Taiwan"
/collection_date="Jan-2015"
CDS <1..1450
/note="ORF1"
/codon_start=2
/product="non-structural protein"
/protein_id="ALC78359.1"
/translation="WRPSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTE
PRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYVQACASLDKTTSSGYPHHVRKNDY
WSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSD
LSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRW
DSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPC
TSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKL
KEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRG
PNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQ
ESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 1431..3053
/note="VP1"
/codon_start=1
/product="major structural protein"
/protein_id="ALC78360.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN
DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 3053..3832
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="ALC78361.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 ctggagaccc tctaacgcac cgcttccccc aggtacttat gaaccagcat accttggtgg
61 gagagacccg cgcgtgaagg gaggcccatc tctgcaacaa gttatgagag accaacttaa
121 accttttaca gagcccagag ggaagccacc aaacccaaat gtcttagagt cagcaaagaa
181 gactatcatc aatgttctgg aacaaaccat tgacccccct caaaagtggt catatgtcca
241 agcttgtgca tccctcgaca agacaacctc cagtggatac ccgcaccacg tccggaagaa
301 tgactattgg agtggtgaat ccttcacagg aaaacttgca gatcaggctt caaaagcaaa
361 tctcatgtat gaggaaggca agcacatgca accagtttac accgcagcac tcaaagacga
421 gctcgtgaaa actgacaaaa tttatggaaa aatcaagaaa agactcctgt ggggttctga
481 cctctccaca atgattcgat gcgccagagc atttggtggt ctcatggatg aattcaaagc
541 aaattgtatt acactcccta tcagagttgg tatgaatatg aatgaagatg gtcccataat
601 atttgagaaa cactccaggt acaggtacca ctatgatgct gattactccc gctgggactc
661 cacacaacag cgggcagtgc tggaagcggc acttgaaatc atggtgaggt tttctgctga
721 gccacagctg gcacaaatag tggcagagga cctgctgtca ccaagtgtgg ttgatgtggg
781 cgatttcaaa atcgctatca atgaaggcct accatctggc gtgccttgca cctcacaatg
841 gaattctatt gcccactggt tacttacctt gtgtgccctt tctgaagtga caggattagg
901 tcctgacatc atacaagcta actccatgta ctctttctat ggtgatgatg agattgtgag
961 cacagacata aaattggacc cagagaaatt gaccgcaaag ctcaaagaat atggccttaa
1021 acccactcgg cccgacaaaa ctgaggggcc gttggtgatt agtgaggacc tgaatgggtt
1081 gactttcctc cgccgaacag tcacccgtga tccagcaggt tggtttggaa agttggacca
1141 aaactccatc ctcaggcagt tgtactggac aagaggaccc aaccatgaag accccagtga
1201 gaccatgata ccacatgcac aaagacctgt gcagctcatg gcactactag gagaatcctc
1261 cctacatgga ccctcatttt acagcaaggt tagcaaatta gtcatatctg aacttaaaga
1321 gggaggaatg gatttttatg tgcccagaca agagtcaatg ttcagatgga tgaggttctc
1381 agatctaagc acatgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg
1441 cgtcgaatga cgccgctcca tctaatgatg gtgctgctgg tctcgtacca gagggcaaca
1501 acgagaccct tcccctagaa ccagttgcgg gcgcagctat agccgcaccc gtcactggcc
1561 aaaataatat aattgacccc tggattagaa caaattttgt gcaagcacca aatggagagt
1621 tcacagtgtc acccagaaac tctcctggag aaattttatt aaatttagag ttgggccctg
1681 atctgaaccc ttatttggct catttgtcaa ggatgtacaa tgggtatgct ggtggagtgg
1741 aagttcaggt tctcctggca gggaacgcgt tcactgccgg aaagatcctc ttcgccgccg
1801 tcccgccaaa cttcccagtg gaattcttaa gcccagccca gatcacaatg ctcccacatt
1861 taatagtaga tgttaggact cttgaaccaa ttatgatccc actccctgat gttaggaata
1921 cattcttcca ttatagtaac cagcctaaca gccgcatgag attagtggct atgctctata
1981 ccccactcag atctaatggc tcaggtgatg atgtctttac tgtctcttgc agggttttga
2041 ctaggcctac tcctgatttt gagttcactt atttagtgcc accttctgtt gaatctaaaa
2101 ctaagccttt ttccttacct attttaaccc tttctgagct cacaaattcg aggtttccag
2161 tccccatcga ttcgcttttc accgcccaga ataatgtgtt gcaggtgcag tgtcaaaatg
2221 gcaggtgtac acttgatggt gagttacaag gcacaaccca gttgctccca actggcatct
2281 gtgcattcag aggacgggtg acagcacaaa ttaaccaacg tgacaggtgg cacatgcaac
2341 tgcaaaacct caatggtaca acatatgacc caactgatga tgtgccagcc ccgctgggta
2401 cacctgactt caagggcgtc gtgtttggga tggtaagcca aagaaatgtg ggtaatgatg
2461 cgcctggctc aaccagagcc caacaggcgt gggtttcaac ctatagcccc caatttgtcc
2521 ccaaattagg ttctgtcaat cttagaatta gtgataatga tgatttccaa ttccagccga
2581 caaaattcac accagtgggc gtcaatgatg acgatgatgg ccacccgttc agacaatggg
2641 aactaccaaa ctattcaggg gagcttacct tgaatatgaa tcttgccccc ccagttgctc
2701 caaattttcc tggtgaacaa ttgttattct tcagatcttt cgtgccatgc tcaggaggtt
2761 acaaccaagg tattatagat tgtcttattc cccaagaatg gatccaacac ttctatcagg
2821 aatcagcacc ctcccagtca gatgtggccc taatcaggta tgtcaacccc gatacgggac
2881 gtacactgtt tgaagcaaaa ttgcacagat ctggttacat tactgtggct cactctggag
2941 actatcctct tgttgttccg gctaatggac actttagatt tgattcttgg gtaaatcagt
3001 tttactcact cgccccaatg ggaactggga atgggcgaag gagggctcag taatggctgg
3061 ggctttcatt gcaggattgg caggcgacat gctcacgtca tctgtgggct cccttgtgaa
3121 cgcaggggca aacgccatca accaaaagat agactttgaa aacaacaaac aactccagtc
3181 tgcttccttt cagcatgata aagagatgct ccaagcgcag gtgagggcaa ccaagcagct
3241 gcaatctgaa atgatagccc taaaacaggg ggttttggcc gcaggcggct tttcccccac
3301 tgatgcagca aggggatcca ttggtgcacc catgacaaag gtgcttgact ggtctggcac
3361 tcggtactgg gcgcccaatt ccacaaagac aactggctat tcgggacaat tcacctcttc
3421 acctgtgcat atgtctagcc caaatgctcc acaatcaaaa cctgcaaagc ctaggtctct
3481 agctccttcc tcttcttcta gcagtgtcta tagtatgtat actcaatcta ctcatttaac
3541 atctggctct tctagtaatg cttcttctgc ctccacaaaa ttgacaaatt taagctctgg
3601 ctcctctcaa aacagaacag cagagtgggt aaatcaacag agaagtctta gccctttcat
3661 gagtggcgca cttaacatct cacatgtcac gccaccctca agtagggctt ccagttctgg
3721 gacggtctcg accgtgccca aggaagtttt ggactcctgg acgtctgcgt ttaacacaca
3781 cagacagccg ctcttcgcac acctcagagt gaggggggag tcacgtgttt agtgaaaaga
3841 aataattggc tataatgtga tttctttcta aagcttggaa t
//