Typing tool
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Typing tool
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Complete norovirus genomes
| KR052021 | GII.17 | |
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| GII.P17 |
ORF1: 1..1693
ORF2: 1674..3296
ORF3: 3296..4075
LOCUS KR052021 4140 bp RNA linear VRL 01-MAY-2016
DEFINITION Norovirus Hu/GII.17/Hsinchu/15-AP-1/2015/TW non-structural protein
gene, partial cds; and major structural protein and minor
structural protein genes, complete cds.
ACCESSION KR052021
VERSION KR052021.1
KEYWORDS .
SOURCE Norovirus Hu/GII.17/Hsinchu/15-AP-1/2015/TW
ORGANISM Norovirus Hu/GII.17/Hsinchu/15-AP-1/2015/TW
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 4140)
AUTHORS Wu,F.-T., Chang,C.-Y., Wu,C.-Y. and Lu,C.-T.
TITLE Norovirus GII.17
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4140)
AUTHORS Wu,F.-T., Chang,C.-Y., Wu,C.-Y. and Lu,C.-T.
TITLE Direct Submission
JOURNAL Submitted (01-APR-2015) Centers for Disease Control department of
health Taiwain, R.O.C., Center for Research and Diagnostics, No.
161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..4140
/organism="Norovirus Hu/GII.17/Hsinchu/15-AP-1/2015/TW"
/mol_type="genomic RNA"
/isolate="Hu/GII.17/Hsinchu/15-AP-1/2015/TW"
/isolation_source="stool specimen from a 40-year male with
diarrhea"
/host="Homo sapiens"
/db_xref="taxon:1692151"
/geo_loc_name="Taiwan"
/collection_date="Feb-2015"
CDS <1..1693
/note="ORF1"
/codon_start=2
/product="non-structural protein"
/protein_id="ALC78356.1"
/translation="SMDLGTTPGDCGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQ
GSEGEATLEGGDNKGTYCGAPILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGR
DPRVKGGPSLQQVMRDQLKPFTEPRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYA
QACASLDKTTSSGYPHHVRKNDYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAAL
KDELVKTDKIYGKIKKRLLWGSDLSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNE
DGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLS
PSVVDVGDFKIAINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYS
FYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTR
DPAGWFGKLDQNSILRQLYWTRGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFY
SKVSKLVISELKEGGMDFYVPRQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 1674..3296
/note="VP1"
/codon_start=1
/product="major structural protein"
/protein_id="ALC78357.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN
DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 3296..4075
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="ALC78358.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 aagcatggat ctaggcacaa cgccaggtga ctgcggatgt ccatacatat acaaaagggg
61 caatgacctt gtggtcattg gggtgcacac tgcagcagct cgtggaggca acacggtcat
121 atgtgccaca cagggaagtg aaggtgaagc cactcttgaa ggaggtgaca acaagggtac
181 ctattgtgga gcccccattt tgggacctgg caatgcacca aaattgagca caaagacaaa
241 attctggaga tcctctaacg caccgcttcc cccaggtact tatgaaccag cataccttgg
301 tgggagagac ccgcgcgtga agggaggccc atctctgcaa caagttatga gagaccaact
361 taaacctttt acagagccca gagggaagcc accaaaccca aatgtcttag agtcagcaaa
421 gaagactatc atcaatgttc tggaacaaac cattgacccc cctcaaaagt ggtcatatgc
481 ccaagcttgt gcatccctcg acaagacaac ctccagtgga tacccgcacc acgtccggaa
541 gaatgactat tggagtggtg aatccttcac aggaaaactt gcagatcagg cttcaaaagc
601 aaatctcatg tatgaggaag gcaagcacat gcaaccagtt tacaccgcag cactcaaaga
661 cgagctcgtg aaaactgaca agatttatgg caaaatcaag aaaagactcc tgtggggttc
721 tgacctctcc acaatgattc gatgcgccag agcatttggt ggtctcatgg atgaattcaa
781 agcaaattgt attacactcc ctatcagagt tggtatgaat atgaatgaag atggtcccat
841 aatatttgag aaacactcca ggtacaggta ccactatgat gctgattact cccgctggga
901 ctccacacaa cagcgggcag tgctggaagc ggcacttgaa atcatggtga gattttctgc
961 tgagccacag ctggcacaaa tagtggcaga ggacctgctg tcaccaagtg tggttgatgt
1021 gggcgatttc aaaatcgcta tcaatgaagg cctaccatct ggcgtgcctt gcacctcaca
1081 atggaattct attgcccact ggttacttac cttgtgtgcc ctttctgaag tgacaggatt
1141 aggtcctgac atcatacaag ctaactccat gtactctttc tatggtgatg atgagattgt
1201 gagcacagac ataaaattgg acccagagaa attgaccgca aagctcaaag aatatggcct
1261 taaacccact cggcccgaca aaactgaggg gccgttggtg attagtgagg acctgaatgg
1321 gttgactttc ctccgccgaa cagtcacccg tgatccagca ggttggtttg gaaagttgga
1381 ccaaaactcc atcctcaggc agttgtactg gacaagagga cccaaccatg aagaccccag
1441 tgagaccatg ataccacacg cacaaagacc tgtgcagctc atggcactac taggagaatc
1501 ctccctacat ggaccctcat tttacagcaa ggttagcaaa ttagtcatat ctgaacttaa
1561 agagggagga atggattttt atgtgcccag acaagagtca atgttcagat ggatgaggtt
1621 ctcagatcta agcacatggg agggcgatcg caatctggct cccagttttg tgaatgaaga
1681 tggcgtcgaa tgacgccgct ccatctaatg atggtgctgc tggtctcgta ccagagggca
1741 acaacgagac ccttccccta gaaccagttg cgggcgcagc tatagccgca cccgtcactg
1801 gccaaaataa cataattgac ccctggatta gaacaaattt tgtgcaagca ccaaatggag
1861 agttcacagt gtcacccaga aactctcctg gagaaatttt attaaactta gagttgggcc
1921 ctgatttgaa cccttatttg gctcatttgt caaggatgta caatgggtat gctggtggag
1981 tggaagttca ggttctcctg gcagggaacg cgttcactgc cggaaagatc ctcttcgccg
2041 ccgtcccgcc aaatttccca gtggaattct taagcccagc ccagatcaca atgctcccac
2101 atttaatagt agatgttagg actcttgaac caattatgat cccactccct gatgttagga
2161 atacattctt ccattatagt aaccagccta acagccgcat gagattagtg gctatgctct
2221 ataccccact cagatctaat ggctcaggtg atgatgtctt tactgtctct tgcagggttt
2281 tgactaggcc tactcctgat tttgagttca cttatttagt gccaccttct gttgaatcta
2341 aaactaagcc tttttcctta cctattttaa ccctttctga gctcacaaat tcgaggttcc
2401 cagtccccat cgattcgctt ttcaccgccc agaataatgt gttgcaggtg cagtgtcaaa
2461 atggcaggtg tacacttgat ggtgagttac aaggcacaac ccagttgctc ccatctggca
2521 tctgtgcatt cagaggacgg gtgacagcac aaattaacca acgtgacagg tggcacatgc
2581 aactgcaaaa cctcaatggt acaacatatg acccaactga tgatgtgcca gccccgctgg
2641 gtacacctga cttcaagggc gtcgtgtttg ggatggtaag ccaaagaaat gtgggtaatg
2701 atgcgcctgg ctcaaccaga gcccaacagg cgtgggtttc aacctatagc ccccaatttg
2761 tccccaaatt aggttctgtc aatcttagaa ttagtgataa tgatgatttc caattccagc
2821 cgacaaaatt cacaccagtg ggcgtcaatg atgacgatga tggccacccg ttcagacaat
2881 gggaactacc aaactattca ggggagctta ccttgaatat gaatcttgcc cccccagttg
2941 ctccaaattt tcctggtgaa caattgttat tcttcagatc tttcgtgcca tgctcaggag
3001 gttacaacca aggtattata gattgtctta ttccccaaga atggatccaa cacttctatc
3061 aggaatcagc accctcccag tcagacgtgg ccctaatcag gtatgtcaac cccgatacgg
3121 gacgtacact gtttgaagca aaattgcaca gatctggtta cattactgtg gctcactctg
3181 gagactatcc tcttgttgtt ccggctaatg gacactttag atttgattct tgggtaaatc
3241 agttttactc actcgcccca atgggaactg ggaatgggcg aaggagggct cagtaatggc
3301 tggggctttc attgcaggat tggcaggcga catgctcacg tcatctgtgg gctcccttgt
3361 gaacgcaggg gcaaacgcca tcaaccaaaa gatagacttt gaaaacaaca aacaactcca
3421 gtctgcttcc tttcagcatg ataaagagat gctccaagcg caggtgaggg caaccaagca
3481 gctgcaatct gaaatgatag ccctaaaaca gggggttttg gccgcaggcg gcttttcccc
3541 cactgatgca gcaaggggat ccattggtgc acccatgaca aaggtgcttg actggtctgg
3601 cactcgatac tgggcgccca attccacaaa gacaactggc tattcgggac aattcacctc
3661 ttcacctgtg catatgtcta gcccaaatgc tccacaatca aaacctgcaa agcctaggtc
3721 tctagctcct tcctcttctt ctagcagtgt ctatagtatg tatactcaat ctactcattt
3781 aacatctggc tcttctagta atgcttcttc tgcctccaca aaactgacaa atttaagctc
3841 tggctcctct caaaacagaa cagcagagtg ggtaaatcaa cagagaagtc ttagcccttt
3901 catgagtggc gcacttaaca tctcacacgt cacgccaccc tcaagtaggg cttccagttc
3961 tgggacggtc tcgaccgtgc ccaaggaagt tttggactcc tggacgtctg cgtttaacac
4021 acacagacag ccgctcttcg cacacctcag agtgaggggg gagtcacgtg tttagtgaaa
4081 agaaataatt ggctataatg tgatttcttt ttaaatttgg gtaatttgta ttttttaaaa
//