Typing tool
|
Complete norovirus genomes
KR052021 | GII.17 | ||
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GII.P17 |
ORF1: 1..1693 ORF2: 1674..3296 ORF3: 3296..4075LOCUS KR052021 4140 bp RNA linear VRL 01-MAY-2016 DEFINITION Norovirus Hu/GII.17/Hsinchu/15-AP-1/2015/TW non-structural protein gene, partial cds; and major structural protein and minor structural protein genes, complete cds. ACCESSION KR052021 VERSION KR052021.1 KEYWORDS . SOURCE Norovirus Hu/GII.17/Hsinchu/15-AP-1/2015/TW ORGANISM Norovirus Hu/GII.17/Hsinchu/15-AP-1/2015/TW Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 4140) AUTHORS Wu,F.-T., Chang,C.-Y., Wu,C.-Y. and Lu,C.-T. TITLE Norovirus GII.17 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4140) AUTHORS Wu,F.-T., Chang,C.-Y., Wu,C.-Y. and Lu,C.-T. TITLE Direct Submission JOURNAL Submitted (01-APR-2015) Centers for Disease Control department of health Taiwain, R.O.C., Center for Research and Diagnostics, No. 161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C. FEATURES Location/Qualifiers source 1..4140 /organism="Norovirus Hu/GII.17/Hsinchu/15-AP-1/2015/TW" /mol_type="genomic RNA" /isolate="Hu/GII.17/Hsinchu/15-AP-1/2015/TW" /isolation_source="stool specimen from a 40-year male with diarrhea" /host="Homo sapiens" /db_xref="taxon:1692151" /country="Taiwan" /collection_date="Feb-2015" CDS <1..1693 /note="ORF1" /codon_start=2 /product="non-structural protein" /protein_id="ALC78356.1" /translation="SMDLGTTPGDCGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQ GSEGEATLEGGDNKGTYCGAPILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGR DPRVKGGPSLQQVMRDQLKPFTEPRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYA QACASLDKTTSSGYPHHVRKNDYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAAL KDELVKTDKIYGKIKKRLLWGSDLSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNE DGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLS PSVVDVGDFKIAINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYS FYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTR DPAGWFGKLDQNSILRQLYWTRGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFY SKVSKLVISELKEGGMDFYVPRQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 1674..3296 /note="VP1" /codon_start=1 /product="major structural protein" /protein_id="ALC78357.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" CDS 3296..4075 /note="VP2" /codon_start=1 /product="minor structural protein" /protein_id="ALC78358.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV" ORIGIN 1 aagcatggat ctaggcacaa cgccaggtga ctgcggatgt ccatacatat acaaaagggg 61 caatgacctt gtggtcattg gggtgcacac tgcagcagct cgtggaggca acacggtcat 121 atgtgccaca cagggaagtg aaggtgaagc cactcttgaa ggaggtgaca acaagggtac 181 ctattgtgga gcccccattt tgggacctgg caatgcacca aaattgagca caaagacaaa 241 attctggaga tcctctaacg caccgcttcc cccaggtact tatgaaccag cataccttgg 301 tgggagagac ccgcgcgtga agggaggccc atctctgcaa caagttatga gagaccaact 361 taaacctttt acagagccca gagggaagcc accaaaccca aatgtcttag agtcagcaaa 421 gaagactatc atcaatgttc tggaacaaac cattgacccc cctcaaaagt ggtcatatgc 481 ccaagcttgt gcatccctcg acaagacaac ctccagtgga tacccgcacc acgtccggaa 541 gaatgactat tggagtggtg aatccttcac aggaaaactt gcagatcagg cttcaaaagc 601 aaatctcatg tatgaggaag gcaagcacat gcaaccagtt tacaccgcag cactcaaaga 661 cgagctcgtg aaaactgaca agatttatgg caaaatcaag aaaagactcc tgtggggttc 721 tgacctctcc acaatgattc gatgcgccag agcatttggt ggtctcatgg atgaattcaa 781 agcaaattgt attacactcc ctatcagagt tggtatgaat atgaatgaag atggtcccat 841 aatatttgag aaacactcca ggtacaggta ccactatgat gctgattact cccgctggga 901 ctccacacaa cagcgggcag tgctggaagc ggcacttgaa atcatggtga gattttctgc 961 tgagccacag ctggcacaaa tagtggcaga ggacctgctg tcaccaagtg tggttgatgt 1021 gggcgatttc aaaatcgcta tcaatgaagg cctaccatct ggcgtgcctt gcacctcaca 1081 atggaattct attgcccact ggttacttac cttgtgtgcc ctttctgaag tgacaggatt 1141 aggtcctgac atcatacaag ctaactccat gtactctttc tatggtgatg atgagattgt 1201 gagcacagac ataaaattgg acccagagaa attgaccgca aagctcaaag aatatggcct 1261 taaacccact cggcccgaca aaactgaggg gccgttggtg attagtgagg acctgaatgg 1321 gttgactttc ctccgccgaa cagtcacccg tgatccagca ggttggtttg gaaagttgga 1381 ccaaaactcc atcctcaggc agttgtactg gacaagagga cccaaccatg aagaccccag 1441 tgagaccatg ataccacacg cacaaagacc tgtgcagctc atggcactac taggagaatc 1501 ctccctacat ggaccctcat tttacagcaa ggttagcaaa ttagtcatat ctgaacttaa 1561 agagggagga atggattttt atgtgcccag acaagagtca atgttcagat ggatgaggtt 1621 ctcagatcta agcacatggg agggcgatcg caatctggct cccagttttg tgaatgaaga 1681 tggcgtcgaa tgacgccgct ccatctaatg atggtgctgc tggtctcgta ccagagggca 1741 acaacgagac ccttccccta gaaccagttg cgggcgcagc tatagccgca cccgtcactg 1801 gccaaaataa cataattgac ccctggatta gaacaaattt tgtgcaagca ccaaatggag 1861 agttcacagt gtcacccaga aactctcctg gagaaatttt attaaactta gagttgggcc 1921 ctgatttgaa cccttatttg gctcatttgt caaggatgta caatgggtat gctggtggag 1981 tggaagttca ggttctcctg gcagggaacg cgttcactgc cggaaagatc ctcttcgccg 2041 ccgtcccgcc aaatttccca gtggaattct taagcccagc ccagatcaca atgctcccac 2101 atttaatagt agatgttagg actcttgaac caattatgat cccactccct gatgttagga 2161 atacattctt ccattatagt aaccagccta acagccgcat gagattagtg gctatgctct 2221 ataccccact cagatctaat ggctcaggtg atgatgtctt tactgtctct tgcagggttt 2281 tgactaggcc tactcctgat tttgagttca cttatttagt gccaccttct gttgaatcta 2341 aaactaagcc tttttcctta cctattttaa ccctttctga gctcacaaat tcgaggttcc 2401 cagtccccat cgattcgctt ttcaccgccc agaataatgt gttgcaggtg cagtgtcaaa 2461 atggcaggtg tacacttgat ggtgagttac aaggcacaac ccagttgctc ccatctggca 2521 tctgtgcatt cagaggacgg gtgacagcac aaattaacca acgtgacagg tggcacatgc 2581 aactgcaaaa cctcaatggt acaacatatg acccaactga tgatgtgcca gccccgctgg 2641 gtacacctga cttcaagggc gtcgtgtttg ggatggtaag ccaaagaaat gtgggtaatg 2701 atgcgcctgg ctcaaccaga gcccaacagg cgtgggtttc aacctatagc ccccaatttg 2761 tccccaaatt aggttctgtc aatcttagaa ttagtgataa tgatgatttc caattccagc 2821 cgacaaaatt cacaccagtg ggcgtcaatg atgacgatga tggccacccg ttcagacaat 2881 gggaactacc aaactattca ggggagctta ccttgaatat gaatcttgcc cccccagttg 2941 ctccaaattt tcctggtgaa caattgttat tcttcagatc tttcgtgcca tgctcaggag 3001 gttacaacca aggtattata gattgtctta ttccccaaga atggatccaa cacttctatc 3061 aggaatcagc accctcccag tcagacgtgg ccctaatcag gtatgtcaac cccgatacgg 3121 gacgtacact gtttgaagca aaattgcaca gatctggtta cattactgtg gctcactctg 3181 gagactatcc tcttgttgtt ccggctaatg gacactttag atttgattct tgggtaaatc 3241 agttttactc actcgcccca atgggaactg ggaatgggcg aaggagggct cagtaatggc 3301 tggggctttc attgcaggat tggcaggcga catgctcacg tcatctgtgg gctcccttgt 3361 gaacgcaggg gcaaacgcca tcaaccaaaa gatagacttt gaaaacaaca aacaactcca 3421 gtctgcttcc tttcagcatg ataaagagat gctccaagcg caggtgaggg caaccaagca 3481 gctgcaatct gaaatgatag ccctaaaaca gggggttttg gccgcaggcg gcttttcccc 3541 cactgatgca gcaaggggat ccattggtgc acccatgaca aaggtgcttg actggtctgg 3601 cactcgatac tgggcgccca attccacaaa gacaactggc tattcgggac aattcacctc 3661 ttcacctgtg catatgtcta gcccaaatgc tccacaatca aaacctgcaa agcctaggtc 3721 tctagctcct tcctcttctt ctagcagtgt ctatagtatg tatactcaat ctactcattt 3781 aacatctggc tcttctagta atgcttcttc tgcctccaca aaactgacaa atttaagctc 3841 tggctcctct caaaacagaa cagcagagtg ggtaaatcaa cagagaagtc ttagcccttt 3901 catgagtggc gcacttaaca tctcacacgt cacgccaccc tcaagtaggg cttccagttc 3961 tgggacggtc tcgaccgtgc ccaaggaagt tttggactcc tggacgtctg cgtttaacac 4021 acacagacag ccgctcttcg cacacctcag agtgaggggg gagtcacgtg tttagtgaaa 4081 agaaataatt ggctataatg tgatttcttt ttaaatttgg gtaatttgta ttttttaaaa //