Typing tool
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Typing tool
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Complete norovirus genomes
| KR052020 | GII.17 | |
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| GII.P17 |
ORF1: 1..1686
ORF2: 1667..3289
ORF3: 3289..4068
LOCUS KR052020 4105 bp RNA linear VRL 01-MAY-2016
DEFINITION Norovirus Hu/GII.17/Changhua/15-AH-1/2015/TW non-structural protein
gene, partial cds; and major structural protein and minor
structural protein genes, complete cds.
ACCESSION KR052020
VERSION KR052020.1
KEYWORDS .
SOURCE Norovirus Hu/GII.17/Changhua/15-AH-1/2015/TW
ORGANISM Norovirus Hu/GII.17/Changhua/15-AH-1/2015/TW
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 4105)
AUTHORS Wu,F.-T., Chang,C.-Y., Wu,C.-Y. and Lu,C.-T.
TITLE Norovirus GII.17
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4105)
AUTHORS Wu,F.-T., Chang,C.-Y., Wu,C.-Y. and Lu,C.-T.
TITLE Direct Submission
JOURNAL Submitted (01-APR-2015) Centers for Disease Control department of
health Taiwain, R.O.C., Center for Research and Diagnostics, No.
161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..4105
/organism="Norovirus Hu/GII.17/Changhua/15-AH-1/2015/TW"
/mol_type="genomic RNA"
/isolate="Hu/GII.17/Changhua/15-AH-1/2015/TW"
/isolation_source="stool specimen from a 28-year male with
diarrhea"
/host="Homo sapiens"
/db_xref="taxon:1692150"
/country="Taiwan"
/collection_date="Feb-2015"
CDS <1..1686
/note="ORF1"
/codon_start=1
/product="non-structural protein"
/protein_id="ALC78353.1"
/translation="DLGTTPGDCGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGS
EGEATLEGGDNKGTYCGAPILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDP
RVKGGPSLQQVMRDQLKPFTEPRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQA
CASLDKTTSSGYPHHVRKNDYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKD
ELVKTDKIYGKIKKRLLWGSDLSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDG
PIIFEKHSRYRYHYDADYSRWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPS
VVDVGDFKIAINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFY
GDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDP
AGWFGKLDQNSILRQLYWTRGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSK
VSKLVISELKEGGMDFYVPRQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 1667..3289
/note="VP1"
/codon_start=1
/product="major structural protein"
/protein_id="ALC78354.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN
DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQPDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 3289..4068
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="ALC78355.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRPLAPSSSSSSVYSMHTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 gatctaggca caacgccagg tgactgcgga tgtccataca tatacaaaag gggcaatgac
61 cttgtggtca ttggggtgca cactgcagca gctcgtggag gcaacacggt catatgtgcc
121 acacagggaa gtgaaggtga agccactctt gaaggaggtg acaacaaggg tacctattgt
181 ggagccccca ttttgggacc tggcaatgca ccaaaattga gcacaaagac aaaattctgg
241 agatcctcta acgcaccgct tcccccaggt acttatgaac cagcatacct tggtgggaga
301 gacccgcgcg tgaagggagg cccatctctg caacaagtta tgagagacca acttaaacct
361 tttacagagc ccagagggaa gccaccaaac ccaaatgtct tagagtcagc aaagaagact
421 atcatcaatg ttctggaaca aaccattgac ccccctcaaa agtggtcata tgcccaagct
481 tgtgcatccc tcgacaagac aacctccagt ggatacccgc accacgtccg gaagaatgac
541 tattggagtg gtgaatcctt cacaggaaaa cttgcagatc aggcttcaaa agcaaatctc
601 atgtatgagg aaggcaagca catgcaacca gtttacaccg cagcactcaa agacgagctc
661 gtgaaaactg acaaaattta tggcaaaatc aagaaaagac tcctgtgggg ttctgacctc
721 tccacaatga ttcgatgcgc cagagcattt ggtggtctca tggatgaatt caaagcaaat
781 tgtattacac tccctatcag agttggtatg aatatgaatg aagatggtcc cataatattt
841 gagaaacact ccaggtacag gtaccactat gatgctgatt actcccgctg ggactccaca
901 caacagcggg cagtgctgga agcggcactt gaaatcatgg tgagattttc tgctgagcca
961 cagctggcac aaatagtggc agaggacctg ctgtcaccaa gtgtggttga tgtgggcgat
1021 ttcaaaatcg ctatcaatga aggcctacca tctggcgtgc cttgcacctc acaatggaat
1081 tctattgccc actggttact taccttgtgt gccctttctg aagtgacagg attaggtcct
1141 gacatcatac aagctaactc catgtactct ttctatggtg atgatgagat tgtgagcaca
1201 gacataaaat tggacccaga gaaattgacc gcaaagctca aagaatatgg ccttaaaccc
1261 actcggcccg acaaaactga ggggccgttg gtgattagtg aggacctgaa tgggttgact
1321 ttcctccgcc gaacagtcac ccgtgatcca gcaggttggt ttggaaagtt ggaccaaaac
1381 tccatcctca ggcagttgta ctggacaaga ggacccaacc atgaagaccc cagtgagacc
1441 atgataccac acgcacaaag acctgtgcag ctcatggcac tactaggaga atcctcccta
1501 catggaccct cattttacag caaggttagc aaattagtca tatctgaact taaagaggga
1561 ggaatggatt tttatgtgcc cagacaagag tcaatgttca gatggatgag gttctcagat
1621 ctaagcacat gggagggcga tcgcaatctg gctcccagtt ttgtgaatga agatggcgtc
1681 gaatgacgcc gctccatcta atgatggtgc tgctggtctc gtaccagagg gcaacaacga
1741 gacccttccc ctagaaccag ttgcgggcgc agctatagcc gcacccgtca ctggccaaaa
1801 taacataatt gacccctgga ttagaacaaa ttttgtgcaa gcaccaaatg gagagttcac
1861 agtgtcaccc agaaactctc ctggagaaat tttattaaac ttagagttgg gccctgattt
1921 gaacccttat ttggctcatt tgtcaaggat gtacaatggg tatgctggtg gagtggaagt
1981 tcaggttctc ctggcaggga acgcgttcac tgccggaaag atcctcttcg ccgccgtccc
2041 gccaaatttc ccagtggaat tcttaagccc agcccagatc acaatgctcc cacatttaat
2101 agtagatgtt aggactcttg aaccaattat gatcccactc cctgatgtta ggaatacatt
2161 cttccattat agtaaccagc ctaacagccg catgagatta gtggctatgc tctatacccc
2221 actcagatct aatggctcag gtgatgatgt ctttactgtc tcttgcaggg ttttgactag
2281 gcctactcct gattttgagt tcacttattt agtgccacct tctgttgaat ctaaaactaa
2341 gcctttttcc ttacctattt taaccctttc tgagctcaca aattcgaggt tcccagtccc
2401 catcgattcg cttttcaccg cccagaataa tgtgttgcag gtgcagtgtc aaaatggcag
2461 gtgtacactt gatggtgagt tacaaggcac aacccagttg ctcccatctg gcatctgtgc
2521 attcagagga cgggtgacag cacaaattaa ccaacgtgac aggtggcaca tgcaactgca
2581 aaacctcaat ggtacaacat atgacccaac tgatgatgtg ccagccccgc tgggtacacc
2641 tgacttcaag ggcgtcgtgt ttgggatggt aagccaaaga aatgtgggta atgatgcgcc
2701 tggctcaacc agagcccaac aggcgtgggt ttcaacctat agcccccaat ttgtccccaa
2761 attaggttct gtcaatctta gaattagtga taatgatgat ttccaattcc agccgacaaa
2821 attcacacca gtgggcgtca atgatgacga tgatggccac ccgttcagac aatgggaact
2881 accaaactat tcgggggagc ttaccttgaa tatgaatctt gcccccccag ttgctccaaa
2941 ttttcctggt gaacaattgt tattcttcag atctttcgtg ccatgctcag gaggttacaa
3001 ccaaggtatt atagattgtc ttattcccca agaatggatc caacacttct atcaggaatc
3061 agcaccctcc cagccagacg ttgccctaat caggtatgtc aaccccgata cgggacgtac
3121 actgtttgaa gcaaaattgc acagatctgg ttacattact gtggctcact ctggagacta
3181 tcctcttgtt gttccggcta atggacactt tagatttgat tcttgggtaa accagtttta
3241 ctcactcgcc ccaatgggaa ctgggaatgg gcgaaggagg gctcagtaat ggctggggct
3301 ttcattgcag gattggcagg cgacatgctc acgtcatctg tgggctccct tgtgaacgca
3361 ggggcaaacg ccatcaacca aaagatagac tttgaaaaca acaaacaact ccagtctgct
3421 tcctttcagc atgataaaga gatgctccaa gcgcaggtga gggcaaccaa gcagctgcaa
3481 tctgaaatga tagccctaaa acagggggtt ttggccgcag gcggcttttc ccccactgat
3541 gcagcaaggg gatccattgg tgcacccatg acaaaggtgc ttgactggtc tggcactcga
3601 tactgggcgc ccaattccac aaagacaact ggctattcgg gacaattcac ctcttcacct
3661 gtgcatatgt ctagcccaaa tgctccacaa tcaaaacctg caaagcctag gcctctagct
3721 ccttcctctt cttctagcag tgtctatagt atgcatactc aatctactca tttaacatct
3781 ggctcttcta gtaatgcttc ttctgcctcc acaaaattga caaatttaag ctctggctcc
3841 tctcaaaaca gaacagcaga gtgggtaaat caacagagaa gtcttagccc tttcatgagt
3901 ggcgcactta acatctcaca tgtcacgcca ccctcaagta gggcttccag ttctgggacg
3961 gtctcgaccg tgcccaagga agttttggac tcctggacgt ctgcgtttaa cacacacaga
4021 cagccgctct tcgcacacct cagagtgagg ggggagtcac gtgtttagtg aaaaaaaata
4081 attggctata atgtgatttc ttttt
//