Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| KR052019 | GII.17 | |
|
|---|---|---|---|
| GII.P17 |
ORF1: 1..1680
ORF2: 1661..3283
ORF3: 3283..4062
LOCUS KR052019 4120 bp RNA linear VRL 01-MAY-2016
DEFINITION Norovirus Hu/GII.17/Taichung/15-AD-2/2015/TW non-structural protein
gene, partial cds; and major structural protein and minor
structural protein genes, complete cds.
ACCESSION KR052019
VERSION KR052019.1
KEYWORDS .
SOURCE Norovirus Hu/GII.17/Taichung/15-AD-2/2015/TW
ORGANISM Norovirus Hu/GII.17/Taichung/15-AD-2/2015/TW
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 4120)
AUTHORS Wu,F.-T., Chang,C.-Y., Wu,C.-Y. and Lu,C.-T.
TITLE Norovirus GII.17
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4120)
AUTHORS Wu,F.-T., Chang,C.-Y., Wu,C.-Y. and Lu,C.-T.
TITLE Direct Submission
JOURNAL Submitted (01-APR-2015) Centers for Disease Control department of
health Taiwain, R.O.C., Center for Research and Diagnostics, No.
161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..4120
/organism="Norovirus Hu/GII.17/Taichung/15-AD-2/2015/TW"
/mol_type="genomic RNA"
/isolate="Hu/GII.17/Taichung/15-AD-2/2015/TW"
/isolation_source="stool specimen from a 17-year female
with diarrhea"
/host="Homo sapiens"
/db_xref="taxon:1692152"
/country="Taiwan"
/collection_date="Feb-2015"
CDS <1..1680
/note="ORF1"
/codon_start=1
/product="non-structural protein"
/protein_id="ALC78350.1"
/translation="GTTPGDCGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEG
EATLEGGDNKGTYCGAPILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRV
KGGPSLQQVMRDQLKPFTEPRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACA
SLDKTTSSGYPHHVRKNDYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDEL
VKTDKIYGKIKKRLLWGSDLSTMIRCARAFGGLMDEFKANCITLPVRVGMNMNEDGPI
IFEKHSRYRYHYDADYSRWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVV
DVGDFKIAINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGD
DEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAG
WFGKLDQNSILRQLYWTRGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVS
KLVISELKEGGMDFYVPRQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 1661..3283
/note="VP1"
/codon_start=1
/product="major structural protein"
/protein_id="ALC78351.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN
DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 3283..4062
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="ALC78352.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 ggcacaacgc caggtgactg cggatgtcca tacatataca aaaggggcaa tgaccttgtg
61 gtcattgggg tgcacactgc agcagctcgt ggaggcaaca cggtcatatg tgccacacag
121 ggaagtgaag gtgaagccac tcttgaagga ggtgacaaca agggtaccta ttgtggagcc
181 cccattttgg gacctggcaa tgcaccaaaa ttgagcacaa agacaaaatt ctggagatcc
241 tctaacgcac cgcttccccc aggtacttat gaaccagcat accttggtgg gagagacccg
301 cgcgtgaagg gaggcccatc tctgcaacaa gttatgagag accaacttaa accttttaca
361 gagcccagag ggaagccacc aaacccaaat gtcttagagt cagcaaagaa gactatcatc
421 aatgttctgg aacaaaccat tgacccccct caaaagtggt catatgccca agcttgtgca
481 tccctcgaca agacaacctc cagtggatac ccgcaccacg tccggaagaa tgactattgg
541 agtggtgaat ccttcacagg aaaacttgca gatcaggctt caaaagcaaa tctcatgtat
601 gaggaaggca agcacatgca accagtttac accgcagcac tcaaagacga gctcgtgaaa
661 actgacaaaa tttatggaaa aatcaagaaa agactcctgt ggggttctga cctctccaca
721 atgattcgat gcgccagagc atttggtggt ctcatggatg aattcaaagc aaattgtatt
781 acactccctg tcagagttgg tatgaatatg aatgaagatg gtcccataat atttgagaaa
841 cactccaggt acaggtacca ctatgatgct gattactccc gctgggactc cacacaacag
901 cgggcagtgc tggaagcggc acttgaaatc atggtgaggt tttctgctga gccacagctg
961 gcacaaatag tggcagagga cctgctgtca ccaagtgtgg ttgatgtggg cgatttcaaa
1021 atcgctatca atgaaggcct accatctggc gtgccttgca cctcacaatg gaattctatt
1081 gcccactggt tacttacctt gtgtgccctt tctgaagtga caggattagg tcctgacatc
1141 atacaagcta actccatgta ctctttctat ggtgatgatg agattgtgag cacagacata
1201 aaattggacc cagagaaatt gaccgcaaag ctcaaagaat atggccttaa acccacacgg
1261 cccgacaaaa ctgaggggcc gttggtgatt agtgaggacc tgaatgggtt gactttcctc
1321 cgccgaacag tcacccgtga tccagcaggt tggtttggaa agttggacca aaactccatc
1381 ctcaggcagt tgtactggac aagaggaccc aaccatgaag accccagtga gaccatgata
1441 ccacacgcac aaagacctgt gcagctcatg gcactactag gagaatcctc cctacatgga
1501 ccctcatttt acagcaaggt tagcaaatta gtcatatctg aacttaaaga gggaggaatg
1561 gatttttatg tgcccagaca agagtcaatg ttcagatgga tgaggttctc agatctaagc
1621 acatgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgaatga
1681 cgccgctcca tctaatgatg gtgctgctgg tctcgtacca gagggcaaca acgagaccct
1741 tcccctagaa ccagttgcgg gcgcagctat agccgcaccc gtcactggcc aaaataatat
1801 aattgacccc tggattagaa caaattttgt gcaagcacca aatggagagt tcacagtgtc
1861 acccagaaac tctcctggag aaattttatt aaatttagag ttgggccctg atttgaaccc
1921 ttatttggct catttgtcaa ggatgtacaa tgggtatgct ggtggagtgg aagttcaggt
1981 tctcctggca gggaacgcgt tcactgccgg aaagatcctc ttcgccgccg tcccgccaaa
2041 tttcccagtg gaattcttaa gcccagccca gatcacaatg ctcccacatt taatagtaga
2101 tgttaggact cttgaaccaa ttatgatccc actccctgat gttaggaata cattcttcca
2161 ttatagtaac cagcctaaca gccgcatgag attagtggct atgctctata ccccactcag
2221 atctaatggc tcaggtgatg atgtctttac tgtctcttgc agggttttga ctaggcctac
2281 tcctgatttt gagttcactt atttagtgcc accttctgtt gaatctaaaa ctaagccttt
2341 ttccttacct attttaaccc tttctgagct cacaaattcg aggtttccag tccccatcga
2401 ttcgcttttc accgcccaga ataatgtgtt gcaggtgcag tgtcaaaatg gcaggtgtac
2461 acttgatggt gagttacaag gcacaaccca gttgctccca actggcatct gtgcattcag
2521 aggacgggtg acagcacaaa ttaaccaacg tgacaggtgg cacatgcaac tgcaaaacct
2581 caatggtaca acatatgacc caactgatga tgtgccagcc ccgctgggta cacctgactt
2641 caagggcgtc gtgtttggga tggtaagcca aagaaatgtg ggtaatgatg cgcctggctc
2701 aaccagagcc caacaggcgt gggtttcaac ctatagcccc caatttgtcc ccaaattagg
2761 ttctgtcaat cttagaatta gtgataatga tgatttccaa ttccagccga caaaattcac
2821 accagtgggc gtcaatgatg acgatgatgg ccacccgttc agacaatggg aactaccaaa
2881 ctattcaggg gagcttacct tgaatatgaa tcttgccccc ccagttgctc caaattttcc
2941 tggtgaacaa ttgttattct tcagatcttt cgtgccatgc tcaggaggtt acaaccaagg
3001 tattatagat tgtcttattc cccaagaatg gatccaacac ttctatcagg aatcagcacc
3061 ctcccagtca gacgtggccc taatcaggta tgtcaacccc gatacgggac gtacactgtt
3121 tgaagcaaaa ttgcacagat ctggttacat tactgtggct cactctggag actatcctct
3181 tgttgttccg gctaatggac actttagatt tgattcttgg gtaaatcagt tttactcact
3241 cgccccaatg ggaactggga atgggcgaag gagggctcag taatggctgg ggctttcatt
3301 gcaggattgg caggcgacat gctcacgtca tctgtgggct cccttgtgaa cgcaggggca
3361 aacgccatca accaaaagat agactttgaa aacaacaaac aactccagtc tgcttccttt
3421 cagcatgata aagagatgct ccaagcgcag gtgagggcaa ccaagcagct gcaatctgaa
3481 atgatagccc taaaacaggg ggttttggcc gcaggcggct tttcccccac tgatgcagca
3541 aggggatcca ttggtgcacc catgacaaag gtgcttgact ggtctggcac tcgatactgg
3601 gcgcccaatt ccacaaagac aactggctat tcgggacaat tcacctcttc acctgtgcat
3661 atgcctagcc caaatgctcc acaatcaaaa cctgcaaagc ctaggtctct agctccttcc
3721 tcttcttcta gcagtgtcta tagtatgtat actcaatcta ctcatttaac atctggctct
3781 tctagtaatg cttcttctgc ctccacaaaa ttgacaaatt taagctctgg ctcctctcaa
3841 aacagaacag cagagtgggt aaatcaacag agaagtctta gccctttcat gagtggcgca
3901 cttaacatct cacatgtcac gccaccctca agtagggctt ccagttctgg gacggtctcg
3961 accgtgccca aggaagtttt ggactcctgg acgtctgcgt ttaacacaca cagacagccg
4021 ctcttcgcac acctcagagt gaggggggag tcacgtgttt agtgaaaaga aataattggc
4081 tataatgtga tttctttcta aatttggcta agcttggaat
//