Typing tool
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Typing tool
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Complete norovirus genomes
| KR020503 | GII.17 | |
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| GII.P17 |
ORF1: 1..5046
ORF2: 5027..6649
ORF3: 6649..7428
LOCUS KR020503 7511 bp RNA linear VRL 29-APR-2015
DEFINITION Norovirus Hu/GII.17/41621/Guangzhou/2014/CHN polyprotein gene,
partial cds; and VP1 and VP2 genes, complete cds.
ACCESSION KR020503
VERSION KR020503.1
KEYWORDS .
SOURCE Norovirus Hu/GII.17/41621/Guangzhou/2014/CHN
ORGANISM Norovirus Hu/GII.17/41621/Guangzhou/2014/CHN
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7511)
AUTHORS Jin,M., Xie,H. and Duan,Z.
TITLE Emerging GII.17 Variant of Norovirus in China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7511)
AUTHORS Jin,M., Xie,H. and Duan,Z.
TITLE Direct Submission
JOURNAL Submitted (27-MAR-2015) Department of Viral Diarrhea, Institute for
Viral Disease Control and Prevention, China CDC, 155 Changbai Rd
St., Chang-ping District, Beijing 102206, China
COMMENT ##Assembly-Data-START##
Assembly Method :: mega v. 4.1
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7511
/organism="Norovirus Hu/GII.17/41621/Guangzhou/2014/CHN"
/mol_type="genomic RNA"
/isolate="Hu/NoV/GII.17/41621/Guangzhou/2014/CHN"
/host="Homo sapiens"
/db_xref="taxon:1636504"
/country="China"
/collection_date="01-Dec-2014"
/note="genotype: GII.17"
CDS <1..5046
/codon_start=1
/product="polyprotein"
/protein_id="AKE37036.1"
/translation="KSSSDSLFANMSVTFKKALGARSKQPPPGRNKTNTKTTKATDTG
IGEENTFQPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQPDAQNTAYSVPPLSQREVGE
AKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAKIEITPLSLYWRVVYT
PQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTGFFKPYQ
DWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKLRPLNILNILATCDWTFA
GIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLAVELVPVVMGGIGLVLG
FTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKEEANELAMVRAIEDAV
LDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIVGTINALLARI
AAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVASTLSGDQRIGLVP
RNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNCDRIENKGKVFDS
DAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFPGQPDMWKDHFRP
DFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARASGLLHERMDEFELQGSDL
PTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDELKQAIKNISIKKCQIV
YNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALHHLRSARIRYYVKCFQEAIYSL
LQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCPKPRDEDDLTIDSRDIKV
EGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYEEL
AIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNPDDFKPKGK
LWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITSTHVIPKGITEAF
GVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSILIKRTTGELMPLA
VRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDLVVIGV
HTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPKLSTKTKFWRSSN
APLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPNPNVLESAKKTII
NVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFTGKLADQASKANL
MYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCARAFGGLMDEFK
ANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLEAALEIMVRF
SAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQWNSIAHWLLTLCALSE
VTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVI
SEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPNHEDPSETMIPHAQRPVQ
LMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMRFSDLSTWEGDR
NLAPSFVNEDGVE"
CDS 5027..6649
/codon_start=1
/product="VP1"
/protein_id="AKE37037.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN
DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 6649..7428
/codon_start=1
/product="VP2"
/protein_id="AKE37038.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKSAKPRSLAPSSSSSSVYSMYTQST
HLTSGSSSNASSASTKLTNLNSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 aaatcttcaa gtgacagctt gtttgctaac atgtctgtca cttttaagaa agccctcggg
61 gcgcggtcta aacaaccgcc ccccgggaga aacaaaacaa atacaaaaac caccaaggcc
121 accgacaccg gaattggtga agagaatacc ttccaacccc cacccaatgg cgaggatgaa
181 ccagggatag tgtacaaggt gggagagggt gtgtctgggc tgcccgacct aacaactgtg
241 gtacaacctg acgcacaaaa cacagcttat agtgttcccc cacttagcca gagagaagtc
301 ggcgaagcta aagaaccgct gcctggctcc attctggaaa tgtgggatgg tgagatctac
361 cactatgggc tgtatgttga gcgggggcat gtgctcggag tacacaaacc acctgctgca
421 ataagccttg ccaaaattga aataacaccg ctgtctctct actggagagt ggtctacact
481 ccccagtatt tgatagatcc aggaactctt aagaacttga gtggagagac tttcccatac
541 acggcctttg acaacaactg ttatgccttc tgttgttggg tcctagacct caacgactcc
601 tggcttagca ggagaatgat ccaaagaaca actggattct tcaaacctta tcaggattgg
661 aacagaaaac ccttaccaac catggatgaa ccaaaaatca agaaggccgc gaatgctgtc
721 ctatgcgctc tctcctcact cttcactaga cccattaagg acatcattgg aaagcttaga
781 ccactgaaca ttcttaatat actggcaacc tgcgattgga cttttgcagg catagtggaa
841 tccttgatcc ttcttgctga actctttggg gtgttctgga cacccccaga tgtgtctgcg
901 atgattgctc ccttactcgg tgactacgag atgcaaggcc ccgaagacct ggccgtggaa
961 cttgtgcccg tggtgatggg aggaataggt ttggtgttag gattcaccaa agaaaagatc
1021 ggcaagatgc tttcatcagc tgcgaccaca cttagggcct gcaaggatct aggatcctat
1081 ggattggaga tactcaaatt ggtcatgaag tggttcttcc ccaagaagga ggaggctaac
1141 gaactagcca tggtgagggc cattgaggat gcagtcctgg atttggaggc aatagaaaac
1201 aatcacatga ccacccttct caaggataaa gacagcctgg ccacatacat gaggactctt
1261 gacttggaag aagagaaagc aaggaaactg tcaaccaaat cggcgtcacc tgacatcgtg
1321 ggtacaataa acgcattatt ggctaggata gcagccgcca ggtcactggt ccacaaggct
1381 aaggaggagc tctcgagcag acagagacct gttgttgtga tgatatcagg tagaccaggt
1441 ataggaaaga cccatctggc cagagagcta gccaagaaag ttgcgtcaac actgtcaggc
1501 gaccaaagga ttggactggt acctagaaat ggcgtcgacc attgggacgc ctacaaggga
1561 gaaagggtgg ttctgtggga tgattatggt atgagcaacc ctatacagga cgcactgagg
1621 ctccaagaat tggctgacac ctgtcctctg accctaaatt gtgataggat tgaaaacaaa
1681 ggaaaagtgt tcgacagtga tgccataatt ataacaacca accttgcaaa cccagcacca
1741 ctagactatg tcaactttga ggcctgctct agacgcatag acttcttggt gtatgcagac
1801 gcacctgaca ttgagaaggc taagcgtgac ttccctggcc aaccagatat gtggaaagac
1861 catttcagac cagacttctc acacattaaa cttcagctgg caccacaggg aggttttgac
1921 aaaaatggca acaccccaca tggcaaaggt gtggtgaagt ccctgacgat tggttctctg
1981 atcgccaggg cctccggctt gctccacgag agaatggatg aattcgagct ccaaggctct
2041 gacctgccaa ccttcaattt tgaccgcaac aaagtcgccg ccttcagaca attagcagct
2101 gaaaacaaat atggtcttat ggacacactg agggtcggca accaactgaa aagtgttaag
2161 accctggatg agctgaagca ggccataaag aacatcagta tcaagaagtg tcagatagtg
2221 tataatggat gcacctatac catggaatct gatgggaggg gcaaggttgt ggttgaaaag
2281 gtacaaaacg caacagttca aaccaacaat gaacttgtag gggcgctcca ccacctgaga
2341 tctgcaagga taagatacta tgttaaatgt ttccaagaag ccatttactc tctactccaa
2401 attgctggtg cagccttcgt cacctcacgc atcgtgaggc gcatgaacat atcaaacctc
2461 tggtcgaagc cacccatcga ggagggtgat gagcctgaag acagaggagg atgccccaag
2521 cccagggatg aagatgacct cactattgac tctagagaca ttaaagtgga agggaagaag
2581 ggcaagaaca agtctggccg gggcaagaaa cacacagcct tctcttccaa gggcctcagt
2641 gatgaagagt acgatgagta caagagaatc agagaggaga ggaatggcaa atactcaata
2701 gaggaatacc tccaagatag ggacagatac tatgaagagc ttgccattgc taaggccact
2761 gaggaggact tctgtgagga ggaggagatc aaaatccgcc agagaatctt ccgacccacc
2821 aggaagcagc ggaaagagga aagggccacg cttgggcttg tcacaggatc ggaaatcaga
2881 aagaggaatc cagatgactt taaaccaaaa ggaaaattgt gggctgatga caacaggagc
2941 gtggattaca atgagaggat agattttgag gctcccccga gtgtttggtc taggatagtc
3001 aactttggca caggctgggg attctgggtt tctccaagtc tctttataac ttcaacacac
3061 gtcataccaa aaggaatcac tgaggccttt ggagtgccca taaaccaaat ccaaattcac
3121 aaatctggag aattttgccg cttgcggttt ccaaagccaa ttagaccaga cgtgagtggg
3181 atgatcttgg aagagggtgc ccctgaaggc actgttgtgt ctattctcat caaaaggaca
3241 acaggggagc tgatgcctct tgcagtcaga atggggactc atgccacaat gaaaatccaa
3301 ggtagaacgg tgggtggtca gatgggtatg cttctcactg gctcaaatgc taaaagcatg
3361 gatctaggca caacgccagg tgactgcgga tgtccataca tatacaaaag gggcaatgac
3421 cttgtggtca ttggggtgca cactgcagca gctcgtggag gcaacacggt catatgtgcc
3481 acacagggaa gtgaaggtga agccactctt gaaggaggtg acaacaaggg tacctattgt
3541 ggagccccca ttttgggacc tggcaatgca ccaaaattga gcacaaagac aaaattctgg
3601 agatcctcta acgcaccgct tcccccaggt acttatgaac cagcatacct tggtgggaga
3661 gacccgcgcg tgaagggagg cccatctctg caacaagtta tgagagacca acttaaacct
3721 tttacagagc ccagagggaa gccaccaaac ccaaatgtct tagagtcagc aaagaagact
3781 atcatcaatg ttctggaaca aaccattgac ccccctcaaa agtggtcata tgcccaagct
3841 tgtgcatccc tcgacaagac aacctccagt ggatacccgc accacgtccg gaagaatgac
3901 tattggagtg gtgaatcctt cacaggaaaa cttgcagatc aggcttcaaa agcaaatctc
3961 atgtatgagg aaggcaagca catgcaacca gtttacactg cagcactcaa agacgagctc
4021 gtgaaaactg acaaaattta tggtaaaatc aagaaaagac tcctgtgggg ttctgacctc
4081 tccacaatga ttcgctgcgc cagagcattt ggtggtctca tggatgaatt caaagcaaat
4141 tgtattacac tccctatcag agttggtatg aatatgaatg aagatggtcc cataatattt
4201 gagaaacact ccaggtacag gtaccactat gatgctgatt actcccgctg ggactccaca
4261 caacagcggg cagtgctgga agcggcactt gaaatcatgg tgagattttc tgctgagcca
4321 cagctggcac aaatagtggc agaggacctg ctgtcaccaa gtgtggttga tgtgggcgat
4381 ttcaaaatcg ctatcaatga aggcctacca tctggcgtgc cttgcacctc acaatggaat
4441 tctattgccc actggttact taccttgtgt gccctttctg aagtgacagg attaggtcct
4501 gacatcatac aagctaactc catgtactct ttctatggtg atgatgagat tgtgagcaca
4561 gacataaaat tggacccaga gaaattaacc gcaaagctca aagaatatgg ccttaaaccc
4621 actcggcccg acaaaactga ggggccgttg gtgattagtg aggacctgaa tgggttgact
4681 ttcctccgcc gaacagtcac ccgtgatcca gcaggttggt ttggaaagtt ggaccaaaac
4741 tccatcctca ggcagttgta ctggacaaga ggacccaacc atgaagaccc cagtgagacc
4801 atgataccac acgcacaaag acctgtgcag ctcatggcac tactaggaga atcctcccta
4861 catggaccct cattttacag caaggttagc aaattagtca tatctgaact taaagaggga
4921 ggaatggatt tttatgtgcc cagacaagag tcaatgttca gatggatgag gttctcagat
4981 ctaagcacat gggagggcga tcgcaatctg gctcccagtt ttgtgaatga agatggcgtc
5041 gaatgacgcc gctccatcta atgatggtgc tgctggtctc gtaccagagg gcaacaacga
5101 gacccttccc ctagaaccag ttgcgggcgc agctatagcc gcacccgtca ctggccaaaa
5161 taacataatt gacccctgga ttagaacaaa ttttgtgcaa gcaccaaatg gagagttcac
5221 agtgtcaccc agaaactctc ctggagaaat tttattaaat ttagagttgg gccctgattt
5281 gaacccttat ttggctcatt tgtcaaggat gtacaatggg tatgctggtg gagtggaagt
5341 tcaggttctc ctggcaggga acgcgttcac tgccggaaag atcctcttcg ccgccgtccc
5401 gccaaatttc ccagtggaat tcttaagccc agcccagatc acaatgctcc cacatttaat
5461 agtagatgtt aggactcttg aaccaattat gatcccactc cctgatgtta ggaatacatt
5521 cttccattat agtaaccagc ctaacagccg catgagatta gtggctatgc tctacacccc
5581 actcagatct aatggctcag gtgatgatgt ctttactgtc tcttgcaggg ttctgactag
5641 gcctactcct gattttgagt tcacttattt agtgccacct tctgttgaat ctaaaactaa
5701 gcctttttcc ttacctattt taaccctttc tgagctcaca aattcgaggt tcccagtccc
5761 catcgattcg cttttcaccg cccagaataa tgtgttgcag gtgcagtgtc aaaatggcag
5821 gtgtacactt gatggtgagt tacaaggcac aacccagttg ctcccatctg gcatctgtgc
5881 attcagagga cgggtgacag cacaaattaa ccaacgtgac aggtggcaca tgcaactgca
5941 aaacctcaat ggtacaacat atgacccaac tgatgatgtg ccagccccgc tgggtacacc
6001 tgacttcaag ggcgtcgtgt ttgggatggt aagccaaaga aatgtgggta atgatgcgcc
6061 tggctcaacc agagcccaac aggcgtgggt ttcaacctat agcccccaat ttgtccccaa
6121 attaggttct gtcaatctta gaattagtga taatgatgat ttccaattcc agccgacaaa
6181 attcacacca gtgggcgtca atgatgacga tgatggccac ccgttcagac aatgggaact
6241 accaaactat tcaggggagc ttaccttgaa tatgaatctt gcccccccag ttgctccaaa
6301 ttttcctggt gaacaattgt tgttcttcag atctttcgtg ccatgctcag gaggttacaa
6361 ccaaggtatt atagattgtc ttattcccca agaatggatc caacacttct atcaggaatc
6421 agcaccctcc cagtcagacg tggccctaat caggtatgtc aaccccgata cgggacgtac
6481 actgtttgaa gcaaaattgc acagatctgg ttacattact gtggctcact ctggagacta
6541 tcctcttgtt gttccggcta atggacactt tagatttgat tcttgggtaa atcagtttta
6601 ctcactcgcc ccaatgggaa ctgggaatgg gcgaaggagg gctcagtaat ggctggggct
6661 ttcattgcag gattggcagg cgacatgctc acgtcatctg tgggctccct cgtgaacgca
6721 ggggcaaacg ccatcaacca aaagatagac tttgaaaaca acaaacaact ccagtctgct
6781 tcctttcagc atgataaaga gatgctccaa gcgcaggtga gggcaaccaa gcagctgcaa
6841 tctgaaatga tagccctaaa acagggggtt ttggccgcag gcggcttttc ccccactgat
6901 gcagcaaggg gatccattgg tgcacccatg acaaaggtgc ttgactggtc tggcactcga
6961 tactgggcgc ccaattccac aaagacaact ggctattcgg gacaattcac ctcttcacct
7021 gtgcatatgt ctagcccaaa tgctccacaa tcaaaatctg caaagcctag gtctctagct
7081 ccttcctctt cttctagcag tgtctatagt atgtatactc aatctactca tttaacatct
7141 ggctcttcta gtaatgcttc ttctgcctcc acaaaattga caaatttaaa ctctggctcc
7201 tctcaaaaca gaacagcaga gtgggtaaat caacagagaa gtcttagccc tttcatgagt
7261 ggcgcactta acatctcaca tgtcacgcca ccctcaagta gggcttccag ttctgggacg
7321 gtctcgaccg tgcccaagga agttttggac tcctggacgt ctgcgtttaa cacacacaga
7381 cagccgctct tcgcacacct cagagtgagg ggggagtcac gtgtttagtg aaaagaaata
7441 attggctata atgtgatttc tttctaaaat ttggctaatt tgtatctttt aaaaaaaaaa
7501 aaaaaaaaaa a
//