Typing tool
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Typing tool
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Complete norovirus genomes
| KP407451 | GI.6 | |
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| GI.P11 |
ORF1: 5..5371
ORF2: 5355..6977
ORF3: 6977..7606
LOCUS KP407451 7691 bp RNA linear VRL 20-JUN-2015
DEFINITION Norovirus GI strain GI/Hu/CHN/2008/Huzhou/N11, complete genome.
ACCESSION KP407451
VERSION KP407451.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7691)
AUTHORS Ji,L., Wu,X., Chen,L., Xu,D., Shen,Y., Zha,Y., Zhu,X. and Han,J.
TITLE Molecular Characteristics of Noroviruses Causing Outbreaks of Acute
Gastroenteritis in Huzhou
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7691)
AUTHORS Ji,L., Wu,X., Chen,L., Xu,D., Shen,Y., Zha,Y., Zhu,X. and Han,J.
TITLE Direct Submission
JOURNAL Submitted (07-JAN-2015) Microbiological Laboratory, Huzhou Center
for Disease Control and Prevention, 999 Changxing Road, Wuxing,
Huzhou, Zhejiang 313000, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7691
/organism="Norovirus GI"
/mol_type="genomic RNA"
/strain="GI/Hu/CHN/2008/Huzhou/N11"
/isolation_source="stool samples"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="China"
/collection_date="2008"
/note="genotype: GI"
CDS 5..5371
/codon_start=1
/product="non-structural polyprotein"
/protein_id="AKM20817.1"
/translation="MMMASKDVVATNVASNNNANNTSATSRFLSRFRGLGGGASPPNP
IKIKSTEMALGLIGKTTQEAAGAGDLPPKQQRDRPPRTQEEVQYDMGWTERPMDQNVK
SWEELDTSTKEEILDSHKEWFDAGGLGPCTMPSTCEQAKDDSPPGEQVRWSARDGVNL
GVNRLTTVSGPEWNLCPLPPTDLRNMEPASEPTIGDMIEFYEGHIYHYSIYIGQGKTV
GVHSPQAAFSVARVTIQPIAAWWRVCYIPQPKHRLSYDQLKELENEPWPYAAITNNCF
EFCCQVMNLEDTWLQRRLITSGRFHHPSQPWSQQTPEFQQDSKLELVRDAILAAVNGL
VSQPFKNFLGKLKPLNVLNILSNCDWTFMGVVEMVILLLELFGVFWNPPDVSNFIASL
LPDFHLQGPEDLARDLVPVILGGIGLAIGFTRDKVTKVMKSAVDGLRAATQLGQYGLE
IFSLLKKYFFGGDQTERTLKGIEAAVIDMEVLSSTSVTQLVRDKQAAKAYMNILDNEE
EKARKLSAKNADPHVISSTNALISRIAMARSALAKAQAEMTSRMRPVVIMMCGPPGIG
KTKAAEHLAKRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMTKIQDDCNK
LQAIADSAPLTLNCDRIENKGMQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVY
CSAPEVEQIRRVSPGDTSALKDCFKPDFSHLRMELAPQGGFDNQGNTPFGKGVMKPTT
INRLLIQAVALTMERQDEFRLQGKMYDFDDDRVSAFTTMARDNGLGILSMASLGKKLR
GVTSMEGLKNALKGYKVGACTIKWQAKVYSLESDGNSVNIREEKNVLTQQQQSVCAAS
IALARLRAARAVAYASCIQSAITSILQIAASALVVNRAVKRMFGTRTAALSLEGPPKE
HKCKVHQAKAAGKGPIGHDDMIDRYGLCETEEDEEVVHTEMPSATIEGKNKGKNKKGR
GRKNNYNAFSRRGLNDEEYEEYKKIREEKGGNYSIQEYLEDRQRYEEELAEVQAGGDG
GIGETEMEIRHRVFYKSKNKKHHQEERRQLGLVTGSDIRKRKPIDWTPPKSAWADDER
EVDYNERINFEAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVIPSSAKEFFGEPLASI
AIHRAGEFTLFRFSKKIRPDLTGMILEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIA
SMRIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVYKRANDWVVCGVHAAATKS
GNTVVCAVQASEGETTLEGGDKGHYAGHEIIKHGSGPALSTKTKFWKSSPEPLPPGVY
EPAYLGGRDPRVSGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSSLEQVMD
TPVPWSYSDACQSLDKTTSSGFPHHKKKNDDWNGTAFIRELGEQAAHANNMYEQAKSM
KPMYTAALKDELVKPEKVYQKVKKRLLWGADLGTVIRAARAFGPFCDAIKSHTIKLPI
KVGMNSIEDGPLIYAEHSKYKYHFDADYTAWDSTQNRQIMTESFSIMCRLTASPELAS
VVAQDLLAPSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDV
IQSMSYFSFYGDDEIVSTDIEFDPAKLTQVLKEYGLKPTRPDKSEGPIIVRKNVDGLV
FLRRTISRDAAGFQGRLDRASIERQIYWTRGPNHSDPFETLVPHQQRKVQLISLLGEA
SLHGEKFYRKISSKVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVN
DDGV"
gene 5355..6977
/gene="vp1"
CDS 5355..6977
/gene="vp1"
/note="major capsid protein"
/codon_start=1
/product="vp1"
/protein_id="AKM20818.1"
/translation="MMMASKDAPTSPDGASGAGQLVPEANTAEQISMDPVAGASTAVA
TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG
WVGNMRVRILLAGNAFTAGKIIICCVPPGFDARILTIAQATLFPHLIADVRTLEPVEL
PLEDVRNVLYHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF
LFLVPPSVEQKTRVFSVPNIPLKDLSNSRVPVPIQGMFMSPDVNQSVQFQNGRCQIDG
QLQGTTPVSLSQLCKIRGKTSSNARVLNLSEVDGTPFIPLESPAPVGFPDLGGCDWHV
NFSFQTQDRDPSQSVTFATNDASFVPYLGSVSPHNGEGFQAGDIIGSLGWISAPSDNS
QFNVWAIPKYGSSLPDVTHLAPAVFPPGFGEVILYFYSTFPGSGQPSQLQVPCLLPQE
FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSVSSGPQTLPIN
GVFVFVSWVSRFYQLKPVGTASAARRLGLRRI"
gene 6977..7606
/gene="vp2"
CDS 6977..7606
/gene="vp2"
/note="minor capsid protein"
/codon_start=1
/product="vp2"
/protein_id="AKM20819.1"
/translation="MAQAVIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQN
SFKHDKEMLGYQVQASNALLAKNLNTRYALLRAGGLSSADAARAVAGAPVTRIVDWNG
TRIAAPTSSTTTLRSGGFMAVPIPLSSKTKQPVMSGQDNPNYATSSISRTASWVQSQN
SMRSVSPFHSDALRTVWVTPPGSSSTSSVQSSFNGVFNTDRLPLFANRR"
ORIGIN
1 gtgaatgatg atggcgtcga aagacgtcgt tgcgactaat gttgcaagca acaacaatgc
61 taacaacact agtgctacat ctcgattttt gtcgagattt aggggtttag gtggtggcgc
121 gagcccccct aaccccataa agatcaaaag cacagaaatg gccttgggtt tgattggcaa
181 gacaacccaa gaggcagcag gggccggtga cctgccacct aaacagcaaa gagaccgacc
241 ccccaggacc caagaggaag tccagtacga catgggatgg accgaaaggc ccatggacca
301 gaatgttaag tcatgggagg aacttgacac ctctaccaag gaagagattt tggacagcca
361 caaagaatgg tttgatgctg gcggtttggg cccgtgcaca atgccctcaa cttgtgaaca
421 ggctaaagat gatagcccac ctggtgagca agtcagatgg tcggcgcgtg atggagtcaa
481 ccttggagtg aatcgtctca caacggtgag tggccccgag tggaatctct gtcctctacc
541 ccccactgac ctaaggaata tggaaccagc tagtgaaccc accattggag acatgataga
601 gttctatgag ggtcatatct accactactc catatatatt gggcaaggaa agacagttgg
661 tgtgcattcc ccacaagcgg cattctcagt ggctagagta accatccaac ctatagctgc
721 ttggtggagg gtttgttata taccccagcc caaacataga ttgagttacg accagctcaa
781 ggaattggaa aatgaacctt ggccatatgc agctatcacc aacaattgtt ttgagttttg
841 ctgtcaagtc atgaatcttg aggacacatg gttgcagagg cggctaataa catcaggtag
901 gttccaccac ccttcccagc cttggtcaca acagacccct gaatttcagc aggatagcaa
961 gctagaacta gttagggatg ccatattggc cgcggtgaat ggccttgttt cacaaccctt
1021 caagaatttc ttgggcaagc tcaagcctct taacgtattg aacatcctat ctaactgtga
1081 ttggaccttt atgggggtgg tagagatggt tatattgctt cttgagctct ttggcgtatt
1141 ctggaatccg cctgatgtgt ctaactttat agcatctctc ctccctgatt tccatctcca
1201 gggaccagaa gacctggccc gggatttggt gccagtcatt cttggtggta tagggctagc
1261 cattggattt accagagaca aagtcactaa ggttatgaag agtgctgtag atgggctccg
1321 ggctgctacg caactggggc aatacgggtt agaaatattc tcactcctga agaagtattt
1381 ctttggtggg gatcagactg aacggaccct caaaggcatt gaagcagcag ttatagatat
1441 ggaggtcttg tcctctacat cagtaacaca actggtgaga gacaagcagg cagctaaagc
1501 ttacatgaac atcctggata atgaagagga aaaagctaga aaactctctg ctaagaatgc
1561 tgacccccat gtaatatcct caacaaatgc cctaatatca cgtatagcca tggcacggtc
1621 cgctctggct aaggctcaag ctgagatgac cagccgaatg aggccagtcg tcatcatgat
1681 gtgcggacct cctggaattg ggaagactaa agcagcggaa cacttggcaa aacgcctggc
1741 caatgagatc aggcctggcg gcaaagtggg actagtgcca cgtgaggctg ttgaccactg
1801 ggatggctac catggtgagg aagtgatgct atgggatgac tatggtatga caaagataca
1861 agatgactgc aacaagctcc aggctattgc tgactctgcc ccactcactc tcaactgtga
1921 caggattgaa aataaaggga tgcagtttgt gtcagatgca atagtcatca ccaccaacgc
1981 cccagggccc gcccctgtgg atttcgtcaa tctcggccct gtgtgcagac gggttgactt
2041 tctagtttac tgttccgccc cagaggtaga gcagataagg agagtcagcc ctggcgacac
2101 gtcggcactg aaagattgtt tcaagccaga tttctcccac ttgaggatgg agttagctcc
2161 tcaagggggg tttgacaacc aggggaacac accattcggc aagggtgtta tgaaaccaac
2221 aaccatcaat agactcctca tacaagctgt ggctctcacc atggagagac aggatgagtt
2281 ccggctccaa ggaaaaatgt atgattttga tgatgacagg gtgtcagcct tcaccaccat
2341 ggcacgcgat aatggattgg gcatcctgag tatggcgagc ctaggtaaga aactgcgcgg
2401 tgtcacatcg atggaaggtc tgaagaatgc tctgaaagga tacaaagttg gcgcgtgtac
2461 aattaagtgg caggccaagg tttattcact ggaatcagat ggcaacagtg ttaacattag
2521 ggaggagaag aacgtcttaa ctcaacaaca gcagtcagtg tgcgctgcct ccattgcact
2581 tgcccgcctg cgggccgcgc gcgcggttgc gtatgcgtca tgcatccaat cagctataac
2641 ctccatacta caaattgctg cctcggccct agtggtcaat agggccgtga aaagaatgtt
2701 tggcacacgc actgctgctt tgtcactaga gggccccccc aaagaacaca agtgcaaagt
2761 ccaccaggct aaagccgcag ggaaagggcc cattggtcat gatgatatga ttgacagata
2821 tggactatgt gagactgagg aggatgaaga ggtagtccat actgagatgc cttccgccac
2881 catagaaggc aagaacaaag gtaagaacaa gaaagggcgc ggccgaaaga acaactacaa
2941 tgccttttcc cgtagaggac ttaatgatga agagtatgaa gagtacaaga aaatacggga
3001 agagaagggt ggaaattaca gcattcagga gtacctagag gatagacaaa ggtatgaaga
3061 ggagctcgct gaggttcaag caggtggaga cggaggaatc ggcgaaaccg aaatggaaat
3121 ccgccataga gtgttctata agtctaaaaa caagaagcac caccaggaag agcggcgcca
3181 attgggatta gtcacgggtt ccgacatccg gaaaaggaaa ccaattgatt ggactccccc
3241 taagtcagca tgggcagatg atgagcgtga agtggattac aatgagagaa tcaactttga
3301 ggcgcccccc actttgtgga gccgagttac aaagtttggg tctgggtggg gtttttgggt
3361 cagccccaca gtcttcataa ccacaacgca cgttatacca agcagtgcaa aagaattctt
3421 tggtgaaccc cttgccagca tagccatcca tagggccgga gaattcaccc tcttcaggtt
3481 ctctaagaaa atcaggcccg atctcacggg catgattctt gaggaaggtt gtccagaagg
3541 tacggtgtgc tcagtgttaa taaaaaggga ctccggtgag ctactaccac tagctgtaag
3601 aatgggcgca atagcatcaa tgcgcataca gggtcgtctt gtccatggtc agtctggtat
3661 gttgctcact ggggcgaatg ctaagggcat ggaccttgga actattccag gggactgtgg
3721 agctccctat gtttacaaga gagcaaatga ctgggtggtc tgcggtgtac acgctgctgc
3781 cactaaatca ggcaacacgg tggtgtgcgc cgtccaagct agtgaagggg agaccacact
3841 tgaaggaggt gacaaaggcc actatgccgg gcatgagata atcaagcatg gaagtgggcc
3901 agccctgtca accaaaacaa agttctggaa atcatcccct gaaccattac cccccggggt
3961 ctatgaaccc gcatacctcg gtggccggga tccaagagtg agtggtggcc cctcgctcca
4021 acaggtatta cgggatcagt tgaagccatt tgctgagcca cgggggcgta tgccagaacc
4081 aggtctcctg gaggccgcag ttgagactgt gacctcatca ctggagcagg ttatggacac
4141 cccagtaccg tggagttaca gtgatgcatg tcaatccctg gacaaaacta ctagctcagg
4201 tttcccccac cataagaaaa agaatgatga ttggaacggc accgccttca ttagagagtt
4261 gggagagcag gcggcacacg ccaataacat gtatgagcaa gccaagagca tgaagcccat
4321 gtacacggcg gcgcttaagg atgaattagt gaagccagaa aaagtgtacc aaaaagtgaa
4381 gaagcgtctg ctttgggggg cagacctagg aactgtgatc cgggccgcac gggcttttgg
4441 cccgttctgt gatgccataa agtcccacac aattaaacta cctatcaaag ttgggatgaa
4501 ttcaatcgag gatggaccat taatttatgc agagcattca aaatataaat atcactttga
4561 tgcagactat acggcttggg actcaacaca aaacaggcaa attatgactg aatcattctc
4621 aatcatgtgt cggctaactg cttctccaga attggcctca gtggtggcac aagatctgct
4681 tgcaccctcg gaaatggacg ttggtgacta tgtcataaga gtgaaggaag gcctcccatc
4741 cggctttcca tgcacatcac aagtcaatag tataaaccat tggttgataa ctttgtgtgc
4801 cctctctgag gtgactggcc tgtcaccaga tgttattcag tctatgtcat acttttcttt
4861 ctatggtgat gatgaaatag tgtctactga tatagaattt gacccagcaa aattgacaca
4921 ggtccttaaa gagtatggcc tcaaacccac ccgccctgac aagagtgagg gtccaataat
4981 tgtgaggaag aatgtggatg gcctagtctt cttacgtcgc actatttccc gcgacgccgc
5041 ggggttccaa gggcggctag accgagcatc cattgaaaga cagatctatt ggaccagagg
5101 gcccaatcac tcagacccct ttgaaacttt ggtgccccac caacaaagga aagtccaatt
5161 gatatcactg ttaggtgagg cttcattgca tggtgaaaag ttctacagga agatctcaag
5221 caaagtcatc caagagatta agacaggggg ccttgaaatg tacgtaccag ggtggcaagc
5281 catgttccgc tggatgcggt tccacgatct tggcctgtgg acaggagatc gcaatctcct
5341 gcccgaattc gtaaatgatg atggcgtcta aggacgctcc aacatcccct gatggcgcta
5401 gtggcgccgg ccagctggta ccggaggcta atacagctga gcaaatctca atggaccctg
5461 ttgcgggtgc ttcaacagca gtcgcaacgg ctgggcaagt taacatgatt gacccatgga
5521 tcttcaataa ctttgtccaa gcgccccaag gagaattcac tatttcccct aataataccc
5581 ccggtgatat tttgtttgat ctacaactag gaccccatct taacccattt ctagcccatc
5641 tctcacagat gtataatggt tgggtcggca atatgcgtgt gcgcatattg ttggccggca
5701 acgccttcac agctggaaag ataatcattt gctgtgtccc ccctggcttt gatgctagaa
5761 tactcacaat agctcaagca actctcttcc cacatttgat tgctgacgtt aggacccttg
5821 agcctgtgga gcttcctttg gaggacgtac gcaacgttct ctaccacaac agtagccagc
5881 cgcagccaac aatgcggctg gttgctatgt tgtatacccc cctccgcact ggtggtggtt
5941 ctggaggcac tgatgccttt gtggtggcgg gcagggtgct tacgtgcccc gcccctgact
6001 ttagcttttt gtttcttgtt cccccttccg ttgaacaaaa gaccagagtt tttagtgtcc
6061 ccaatatacc tctgaaagat ctctcaaatt ctcgtgtccc tgtgcctata cagggcatgt
6121 ttatgtcccc agatgttaat cagtcagtcc agtttcaaaa cgggcgctgc caaattgatg
6181 gtcaactcca gggcaccacc ccagtctcgc tcagccaact ctgcaagatt aggggtaaaa
6241 cttcaagcaa tgccagggtg ctcaacttga gtgaggtaga tggtacaccc ttcatccccc
6301 ttgaatcacc agcgccagta ggttttcccg acttaggagg ctgtgactgg cacgtaaatt
6361 tctctttcca gactcaagat cgggacccat ctcaaagtgt gacctttgca accaatgatg
6421 ccagctttgt tccctaccta ggtagtgtct cccctcacaa tggggaaggt tttcaagcag
6481 gcgacatcat aggtagcctt gggtggattt cagccccgtc tgataattca caatttaatg
6541 tttgggcaat accaaagtat ggatctagtc tcccagatgt cacccatctt gctcctgctg
6601 tgttcccccc aggctttggg gaggtgatcc tatatttcta ctccaccttc ccaggttctg
6661 gacaacccag tcaacttcaa gtcccatgtt tgttacctca ggagttcatc acccacttct
6721 gcaacgaaca ggctcccatc gctggggagg ctgccctcct ccactacgtg gaccctgaca
6781 cggggcgaaa cttgggggaa ttcaaacttt atcctgatgg atttatgacc tgtgtcccta
6841 atagtgttag cagtggccct caaacccttc ccattaatgg agtctttgtc tttgtttcat
6901 gggtatccag attctatcaa ctcaagcctg tgggaacggc ctcagcggct agaaggcttg
6961 gattgcggcg tatataatgg cccaagctgt catcggtgcc atagccgcgt ctgccgctgg
7021 tagtatacta ggggcgggca tacaggctgg tgctgaggct ggtctccagg ctcaacggta
7081 ccagcaggat ttacaattgc aacaaaattc tttcaagcat gataaggaaa tgttaggcta
7141 tcaggttcag gctagtaatg ctcttttagc taagaatctt aacactaggt atgctcttct
7201 gcgggcaggg ggcctatcta gtgctgatgc tgctcgggca gtggctggtg cccctgtcac
7261 ccgtatagtg gactggaatg gcacgcggat tgcagcgcct acctcaagca ccactacact
7321 cagatctggt ggttttatgg ctgtccctat accattgtct tcaaagacca agcaaccagt
7381 gatgtctggg caggataatc caaattatgc tacttcttct atctctagaa ctgcttcatg
7441 ggtgcaatct caaaattcta tgagatctgt ttctcctttc cacagtgatg ctctgagaac
7501 cgtgtgggtc acaccaccag gttcatcatc aacttcatct gtgcaatcta gttttaatgg
7561 tgtttttaat acagatagat tgcctctgtt cgcaaacaga aggtaatatt ttgtaatagg
7621 atgccggtgg gcaccatatt cagatttggt tttaattgat attttaatta caatttggct
7681 taattggtgt t
//