Typing tool
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Typing tool
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Complete norovirus genomes
| KP407450 | GI.8 | |
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| GI.P8 |
ORF1: 5..5404
ORF2: 5388..7019
ORF3: 7019..7660
LOCUS KP407450 7740 bp RNA linear VRL 08-APR-2016
DEFINITION Norovirus GI strain Hu/CHN/2008/GI.P8_GI.8/Huzhou/N10, complete
genome.
ACCESSION KP407450
VERSION KP407450.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7740)
AUTHORS Ji,L., Wu,X., Chen,L., Xu,D., Shen,Y., Zha,Y., Zhu,X. and Han,J.
TITLE Molecular Characteristics of Noroviruses Causing Outbreaks of Acute
Gastroenteritis in Huzhou
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7740)
AUTHORS Ji,L., Wu,X., Chen,L., Xu,D., Shen,Y., Zha,Y., Zhu,X. and Han,J.
TITLE Direct Submission
JOURNAL Submitted (07-JAN-2015) Microbiological Laboratory, Huzhou Center
for Disease Control and Prevention, 999 Changxing Road, Wuxing,
Huzhou, Zhejiang 313000, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7740
/organism="Norovirus GI"
/mol_type="genomic RNA"
/strain="Hu/CHN/2008/GI.P8_GI.8/Huzhou/N10"
/isolation_source="stool samples"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="China"
/collection_date="2008"
/note="genotype: GI.P8_GI.8"
CDS 5..5404
/codon_start=1
/product="polyprotein"
/protein_id="AKM20814.1"
/translation="MMMASKDAIAVADVSNNNANTNNENIGSRLMARIRGRIGPQRGE
TTTKIKDANMALDLLRRSQTPSPARQESPPKDQRDRPPRTVSEVKRAMKWDVEPEHRE
STARAWCDLSKEEKEEIMRNNEKLFDAGGVTPSTLPSTFERAETNNDVGDQQAVSWSA
NDGVNIGVSDLTTVHGPFWNMCPLPPLDARNNGPAKEPLIGDMIEFYEGHIFHYAIYI
GQGKTIGVHSPQAAFSIPRITIHPLVAWWRVCYVPNDRQRLTYDQLKELENEPWPYAA
VTNNCYEFCCRVMALDDTWLQRRLVSTGKFNHPTQDWSQDTPDFHQDSKLEMVRDAVL
SAINGLVSQPFKNILSKIKPLNVLNLLSNCDWTFMGVVELIVLMAELFDIFWTPPDIS
SFIASLLPDFHLQGPEDLARDLVPLILGGIGLAIGFTRDKITKVMKSAVDGLRSATQL
GQYGLEIFSIIKKYFFGGDQTEKTLRGIEDAVIDMEVLSSTNVTQLVKDKKLARTYMN
VLDNEEEKARKLSVRSADPHIVTSVNNLISRISMARSALAKAQAEMTSRPRPVVIMMC
GPPGIGKTKAAEHLAGRLAAEIRSGGKVGLVPRESIDHWDGYHGEDVLLWDDYGMSKI
TEDCNKLQAIADTAPLSLNCDRIENKGMQFSSDAIIITTNAPGPAPVDFVNLGPVCRR
VDFLVYCSAPEIEQMRRAHPGDTNAIKDLYKKDFTHLKMELAPQGGFDSQGNTPFGKG
VMKPTTLNRLLIQATALAMERQDEFQLQGATYNFDEDRVAAFTNLARANGLGLISMAT
LGKKLRGVKSMEGLRNALLGYKIEECDIVWNTRMYSIKSDGNTVTIKEKQAPTSPQHQ
AICTATLALSRLRAARALAYASCLQSAVLSILQVAGSAVVVSRAVKRMFGTRTEQPML
EGKHKEHNCRVHRAEAAGHGPIGHDGVIERYGLCESEQEEESVQTVELPTASEEGKNK
GKTKKGRGRKSNFNAFSRRGLSDEEYEEYKKIREEKSGNYSIQEYLEDRQRYEEELAE
VQAGGDGGIGETEAEIRHRVFYKSKSGMRKQRQEERRQLGLVSGTEIRKRKPIDWTPP
KNDWSEDTRTVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVIPPGAKE
VFGESISNVAIHRVGEFTQFRFPKKMRPDLSGMVLEEGCPEGTVCTIMIKRDSGELLP
LAVRMGAVASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVVC
GVHAAATKSGNTVVCAIQGGEGEATLEGGDRNKGHYAGHPILRYGNGPSLSTKTKFWK
STPQPLPPGTYEPAYLGGRDPRVEGGPSLQQVLRDQLKPFAEPRGRLPEAGLLEAAVE
TVTNALEQVMDTPVAWSFSDACMSLDKTTSSGYPHHKRKNDDWNGSSFVRELGDQAAH
ANNMYELGKPMKPVYTAALKDELVKPDKVYNKIKKRLLWGADLGTVIRAARAFGPFCE
AIKPHVIKLPIKVGMNAIEDGPLIYAEHSKYKYHYDADYTAWDSTQNREIMMESFNIM
CKLTANPSLAAVVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIMTLCA
LSEVTGLSPDVIQSQSYFSFYGDDEIVSTDIEFDPAKLTQILKEYGLKPTRPDKTDGP
IIVRQQVDGLVFLRRTISKDAIGYQGRLDRNSIERQLWWTRGPNHEDPFETLVPHSQR
KVQLISLLGEAALHGEKFYRKIASRVIQEVKEGGLEIYIPGWQAMFRWMRFHDLSLWT
GDRDLLPDYVNDDGV"
gene 5388..7019
/gene="VP1"
CDS 5388..7019
/gene="VP1"
/codon_start=1
/product="VP1"
/protein_id="AKM20815.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPLPIKPVAGAATAVA
TAGQVNMIDPWIMNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSRMYNG
WVGNMQVRIMLAGNAFSAGKIIVCCIPPGFSSQSISIAQATMFPHVIADVRVLEPIDV
PLDDVRNVLFHNNDNPQTMRLLCMLYTPLRSGGTSSGTDPFVIAGRVLTCPTPDFSFL
FLVPPDIEQRTKPFSVPNIPMNLMSNSRVSMLIDGMMVSNDQNQVPQFQNGRVTLDGQ
LQGTTTVSAACVARMRGRIFNNNGNYGVNLTELDGNPYHAFDSPAPLGFPDFGNCDLH
MTFVKINPNELSSGDPSGKVVIRSYDATFAPHLGTVKLENDDELARFVGKEVVLELTW
VSNREGATLNLWAVPNYGSSLTQASQLAPPIYPPGFGEAIVYFTSTFPTVSNPKVPCT
LPQEFVSHFVNEQAPTRGDAALLHYVDPDTHRNLGEFKMYPEGYMTCVPNAGGGPQTL
PINGVFVFISWVSRYYQLKPVGTAGAARRLGLRRS"
gene 7019..7660
/gene="VP2"
CDS 7019..7660
/gene="VP2"
/codon_start=1
/product="VP2"
/protein_id="AKM20816.1"
/translation="MAQAVLGAIAATAAGSAVGAGIEAGTQAALQHQRYQQDLNMQSL
SFQHDKEMLGLQVDASNALLQRNLATRYNLLSAAGLSSADAARMIAGAPPTKVVDWNG
VRISAPTSSAITLKSGSFMSVPVMNYKTNKNVTGIDNPNYAPSGSSMVSRTSQWVESQ
NSLRSLDPFHRSALQTTWVTPPGSTSVSTVSSTSTIPRYFNTERLPLFANLRK"
ORIGIN
1 gtgaatgatg atggcgtcga aagacgctat tgccgttgct gatgtcagca ataacaatgc
61 taacaccaac aatgaaaata ttgggtcccg ccttatggcg aggatccgtg ggcgcatagg
121 cccacaacgt ggtgaaacaa ctacaaagat taaggatgcc aatatggcac ttgacctgct
181 acgccggtca caaacaccct ccccagctcg acaagagagc ccccccaaag atcagagaga
241 ccgtcctcca cgaaccgttt cagaggttaa aagggccatg aagtgggatg tcgaaccaga
301 acaccgggaa agtacagcaa gagcctggtg cgatctctcg aaagaagaaa aagaggagat
361 aatgcgcaac aatgagaagc tatttgatgc tgggggagtc actccatcaa ctctacccag
421 cacatttgaa agggctgaaa caaacaatga tgttggtgac caacaagctg tatcatggtc
481 tgctaatgat ggagtgaata ttggcgttag tgatctgacc actgtccatg gaccattttg
541 gaatatgtgc cccctcccac cattggacgc tcgcaacaat ggtcctgcca aagagcccct
601 cataggggat atgatagagt tttatgaagg ccacatattc cactatgcca tttatatagg
661 gcaaggtaag actattgggg tccactcgcc acaggctgct ttttccatac ccagaataac
721 catccaccct ttggtggctt ggtggcgcgt gtgttatgtt cccaatgacc gtcaacgcct
781 cacctatgat caacttaaag aattggagaa tgaaccatgg ccatatgccg ctgttactaa
841 caactgctat gaattttgtt gtagagtgat ggcgctagat gacacttggc tccaaaggag
901 actggttagc actggaaagt tcaaccaccc cacacaggat tggtcacaag acaccccaga
961 cttccaccaa gattcaaagt tagaaatggt gagagatgct gtattgtcag ccatcaacgg
1021 tcttgtgtca caacccttca aaaacattct ttcaaagatt aagccattaa atgtgctcaa
1081 tcttttatca aactgtgatt ggaccttcat gggggttgta gagctgatcg tcctcatggc
1141 agaattgttc gacatattct ggactccacc agatatctcg agctttattg catcgctgtt
1201 gccagacttt catcttcaag gcccagagga cttagctagg gacctggtcc cactcatact
1261 aggtggcatt ggcctagcaa ttggctttac aagagacaag ataacaaaag tgatgaagag
1321 tgccgttgat ggtctgcggt cagcgacgca gcttggacag tatggattag aaatattctc
1381 aatcataaag aaatacttct ttggaggtga ccagacagaa aagaccctcc ggggcatcga
1441 ggatgcagtg atagacatgg aggtattgtc cagcaccaac gtaacacaat tggtcaagga
1501 caagaagttg gccagaactt acatgaatgt actggataat gaggaagaaa aggctagaaa
1561 actctcagtc cgcagtgctg acccacacat agtaacctca gtcaacaact tgatatcccg
1621 catttcaatg gcaagatcag ccctggccaa ggcccaagca gagatgacat cccgcccacg
1681 cccagtggtc ataatgatgt gtggtccccc tggcattggg aaaacgaaag ctgctgagca
1741 tctggcgggc cgattggctg ccgaaataag atcaggggga aaagtcggtc ttgtgccgcg
1801 agagtccata gaccactggg acggttatca tggtgaggac gttctgctct gggatgatta
1861 tggtatgtca aaaataacag aagattgcaa taaattgcaa gccatagctg acactgcacc
1921 actgtcactc aattgtgaca ggatagaaaa caaaggcatg cagttctcct ctgatgcaat
1981 aattattacc accaatgctc ctggtccagc tccagttgac tttgttaatc tgggtcctgt
2041 gtgcaggcgg gtagactttt tagtatactg ctctgctcca gaaattgaac aaatgcggag
2101 ggcccaccca ggtgacacta atgctattaa ggacctgtac aagaaagatt tcacgcacct
2161 caagatggaa ttagctccac aaggtggctt tgatagccag ggcaacacgc cgtttggaaa
2221 aggtgttatg aagcccacaa ccctcaatag gctattgatc caggccacag cattagccat
2281 ggagcggcaa gatgagtttc agcttcaagg ggccacctac aattttgacg aggatagggt
2341 ggccgctttc accaacttag cacgcgccaa tggcctggga ctcataagca tggcaacatt
2401 gggtaagaaa ttgaggggtg tcaaatcaat ggaggggctg cgcaatgcac tattgggcta
2461 taaaatagaa gaatgtgaca tagtctggaa caccagaatg tactctatta agagtgacgg
2521 gaataccgtc acgattaaag agaagcaggc accaacctcg ccccaacacc aggctatctg
2581 cacggccacc ctcgcgctct cccggttgcg ggctgctagg gcccttgcat atgcttcttg
2641 cttacagagt gctgtgctgt caatacttca ggtggctgga tccgctgtgg tggtgagcag
2701 ggccgttaag cgtatgtttg gtacgcgcac cgaacagcct atgctagaag gtaagcacaa
2761 ggaacataat tgcagagtgc accgagctga ggcagccggc catggcccca ttggccacga
2821 tggggtcatt gaacgctatg gcctgtgtga gagtgaacaa gaggaggaaa gcgtccagac
2881 agtagaacta cccactgcca gtgaggaggg caagaacaaa ggtaagacca agaagggtcg
2941 tgggcgaaag tctaatttca atgccttctc cagacgcggc cttagtgatg aggagtatga
3001 ggaatacaag aaaatcaggg aggagaaaag tggcaactac agtatacaag agtaccttga
3061 agaccgacaa cgctacgagg aagagcttgc tgaagtgcag gcgggcggag atggcggaat
3121 aggtgaaact gaggcagaaa tccgccatcg ggtcttctat aaatcaaaat ctggtatgag
3181 gaaacaacgc caagaagaac ggcgccagct agggctcgtg agcggcaccg agatcagaaa
3241 gcgcaaaccc atagactgga ccccccccaa gaacgattgg tcagaggaca ctagaacagt
3301 caattatgac gaacatatca gttttgaagc accaccctca atctggagta gagtggtaaa
3361 atttggtagt ggttggggtt tctgggttag ctcaacagtg ttcatcacca cgacccatgt
3421 cataccacct ggggccaagg aagtttttgg tgaaagcatc agtaatgtgg ctatccatag
3481 agtcggtgaa ttcacccagt ttcgcttccc taaaaagatg agacctgatc tctctggtat
3541 ggtgctagag gaaggttgtc cagaaggcac agtatgcacc ataatgataa agagagactc
3601 tggtgagctg ttaccacttg ctgtccgcat gggtgcagtg gcctcaatga aaatccaagg
3661 aaagctcatg catggacaat caggaatgtt gctcactggc gccaatgcca aaggcatgga
3721 cctcgggacc atacccggtg actgtggggc gccttacgtc cacaaaaggg gtaacgattg
3781 ggttgtttgc ggagtccatg cagctgccac aaaatcaggt aacactgtag tttgtgctat
3841 acaaggtggt gagggtgaag ccacgctaga gggtggcgac cgcaataagg gccattatgc
3901 tggacaccca atattgagat acgggaatgg cccttcactc tcaactaaaa caaaattttg
3961 gaagtcaacc ccacaacccc tacctccagg tacttatgaa ccagcttatc tcggaggtag
4021 agaccccagg gtcgaagggg gcccatcact acaacaagtt ctaagggacc agctaaaacc
4081 atttgctgaa ccccgaggca gattacctga ggcgggattg ctagaagccg cagttgagac
4141 agtcaccaat gcacttgaac aggtcatgga cacaccagtg gcatggagtt tcagtgatgc
4201 ttgcatgtct ttggataaaa caactagctc tggctatccc caccataaga ggaagaatga
4261 tgattggaat gggagctcat tcgtgcgaga gctgggagac caagcagccc atgccaataa
4321 catgtatgaa cttggcaaac ccatgaagcc cgtgtataca gcagccctca aggacgagct
4381 tgttaaacca gataaggttt acaataaaat caagaagaga ctgctttggg gagctgacct
4441 tggtactgtc atacgtgctg ctagggcctt tggaccattc tgtgaggcca taaagccaca
4501 tgtgattaag ttgcctatca aagtgggcat gaatgccata gaagatggcc ctctgatata
4561 tgcagaacat tctaaatata agtaccatta tgatgctgat tacactgctt gggactcaac
4621 gcaaaacaga gagattatga tggagtcctt caatatcatg tgcaagctca cagccaatcc
4681 ctccttggct gcggtggtgg ctcaggacct actctcccca tctgagatgg atgttggtga
4741 ttatgtaatc agtgttaaag atggtctgcc atctggcttt ccatgcacct cacaagttaa
4801 cagcattaac cactggatca tgaccctatg tgcactatca gaggtcactg gcttatcccc
4861 tgatgtaata caatcacaat cctacttctc cttctacggt gatgatgaga tagtctcaac
4921 agacattgaa tttgacccag ctaaattgac acaaatatta aaagagtatg gcctgaaacc
4981 cacaaggccc gataaaactg atggccccat tatagtcagg caacaggtgg atggtctggt
5041 cttccttcgt cgcacaattt cgaaggacgc tattgggtac caaggtcgac ttgaccgcaa
5101 ctccattgaa agacaactct ggtggacccg cggacccaac catgaagacc cgtttgagac
5161 tctggtgcca cactcacaaa gaaaagttca attgatatcc ctactgggtg aggccgccct
5221 acatggtgaa aaattctaca ggaagatagc cagtagggtt atccaagaag ttaaggaagg
5281 gggtctggag atctatatcc ctgggtggca ggccatgttc cgctggatgc gattccatga
5341 cttaagtttg tggacaggag atcgcgatct cttgcccgat tatgtaaatg atgatggcgt
5401 ctaaggacgc cccaacaaac atggatggca ccagtggtgc cggtcagctg gtaccagagg
5461 caaatacggc tgaaccttta ccaataaaac cagtggccgg ggctgcgact gcggttgcaa
5521 ccgccggtca ggtaaatatg attgacccct ggataatgaa caattttgta caggctcccc
5581 aaggggagtt taccatttcc ccaaataata cacctggtga tattttattt gatttgcaat
5641 taggaccaca tcttaatcct ttcttggctc atttgtctag aatgtataat ggttgggttg
5701 ggaatatgca ggtccgcata atgcttgctg gtaatgcctt ttcagctgga aagattattg
5761 tgtgctgcat accgccgggt ttttcttctc aatctatttc tattgctcaa gctacaatgt
5821 tcccacatgt catagctgat gtcagagtgt tagaacctat tgatgtaccc ttagatgatg
5881 ttagaaatgt cctttttcat aataatgata acccccaaac gatgagattg ctttgcatgt
5941 tgtatacacc ccttcggtct ggtggtacat cttcaggtac agatcctttt gtcattgctg
6001 gtcgtgtctt gacctgcccc acacctgatt ttagtttctt gttccttgtc cctcctgata
6061 tcgagcaaag aactaagccc ttcagtgtac ccaatatccc tatgaacctg atgtccaatt
6121 cccgtgtttc aatgttgatt gatggtatga tggtttcaaa tgatcagaat caagtccccc
6181 agtttcagaa tggtcgagtc actttagatg gacagctgca gggtaccacc acagtttcag
6241 ctgcgtgtgt agcaaggatg agggggcgca tttttaataa taatggcaat tatggtgtga
6301 atctgactga actggatggc aatccctatc atgcctttga tagcccggct cctttaggct
6361 ttcctgactt tgggaattgt gatttgcaca tgacctttgt taaaattaat cccaatgagt
6421 tgtcctctgg agacccttct ggcaaagtgg tcattcgttc ctacgatgcc acttttgccc
6481 cccatcttgg tactgtcaaa ctggagaatg atgatgagct agctcggttt gtgggtaagg
6541 aggtagtact ggagctgacg tgggtttcca acagagaggg tgccaccctt aatctatggg
6601 ctgttccaaa ttatggttcc agtttgacac aggcgtcaca gcttgcccca ccaatttacc
6661 cccctgggtt tggtgaggct attgtgtatt tcacctctac ttttccaaca gtcagcaacc
6721 caaaagtccc atgtacactt cctcaagaat ttgtttcaca ttttgtcaat gaacaggccc
6781 ccacacgcgg cgatgccgct cttcttcatt atgttgatcc tgacacacac cgtaatcttg
6841 gagagtttaa gatgtaccct gagggctaca tgacatgtgt ccctaatgct ggtggtgggc
6901 cacaaacctt accaatcaat ggtgtatttg tcttcatttc ttgggtttct agatattacc
6961 agttaaagcc tgtgggaact gccggtgcgg ctaggaggct tggtcttagg agatcataat
7021 ggcccaggct gtcttgggag ccattgctgc gactgcagca ggaagtgctg tgggagcagg
7081 tattgaagct ggcacacagg ccgccctaca acatcaaagg tatcaacagg atttaaatat
7141 gcagtcccta tcctttcaac atgataaaga aatgttaggc ttacaagtag atgcttctaa
7201 tgctttattg caaagaaatt tggccacaag atataatttg ctgagtgcag caggcttgtc
7261 gtctgcagat gctgctagga tgatagcggg tgctccacca actaaagtag tggattggaa
7321 tggagtcaga atatctgccc ccacatcaag tgcaataact ctaaaatctg gcagttttat
7381 gtcagtgcca gtcatgaatt acaaaaccaa caagaatgtg acaggcatag acaacccaaa
7441 ttatgcaccc agtggctcat caatggttag tcgcaccagc caatgggtgg aatctcaaaa
7501 ttcattgcgc tcgcttgatc ctttccatag gagcgcgttg caaacaacgt gggttactcc
7561 tccaggatcc acatctgtgt caacagtgtc aagcacttca acaataccta ggtattttaa
7621 tactgaaaga cttccgttat tcgcaaatct gcggaagtaa gtttttgtaa tataaagtgg
7681 gcattatatt cagattggct tttgattata attaatttgg ctgattagaa atttaatgtt
//