Typing tool
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Typing tool
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Complete norovirus genomes
| KP244322 | GII.4 New Orleans | |
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| GII.P4 New Orleans |
ORF1: 1..822
ORF2: 803..2425
ORF3: 2425..3231
LOCUS KP244322 3277 bp RNA linear VRL 27-APR-2015
DEFINITION Norovirus Hu/GII.4/PA99/2012/ITA isolate PA99/2012 RNA-dependent
RNA polymerase gene, partial cds; and major capsid protein and
minor capsid protein genes, complete cds.
ACCESSION KP244322
VERSION KP244322.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/PA99/2012/ITA
ORGANISM Norovirus Hu/GII.4/PA99/2012/ITA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3277)
AUTHORS Medici,M.C., Giammanco,G.M., Tummolo,F. and Martella,V.
TITLE Molecular epidemiological dynamics of the norovirus GII.4 pandemic
variant New Orleans 2009 in Italy
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3277)
AUTHORS Medici,M.C., Giammanco,G.M., Tummolo,F. and Martella,V.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2014) Unit of Microbiology and Virology,
Departement of Clinical and Experimental Medicine, University of
Parma, Viale A. Gramsci, 14, Parma, Parma 43126, Italy
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3277
/organism="Norovirus Hu/GII.4/PA99/2012/ITA"
/mol_type="genomic RNA"
/isolate="PA99/2012"
/isolation_source="stool"
/db_xref="taxon:1644050"
/country="Italy"
/collection_date="2012"
/collected_by="GM Giammanco"
/note="genotype: GII.4 New Orleans 2009"
CDS <1..822
/note="ORF1"
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="AKE31875.1"
/translation="HYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLS
PSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFS
FYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTR
DPAGWFGKLEQSSILRQMYWTRGPNHGDPSETMIPHSQRPIQLMSLLGEAALHGPAFY
SKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 803..2425
/note="ORF2"
/codon_start=1
/product="major capsid protein"
/protein_id="AKE31876.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNARDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHISGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG
GTTHRNEPQQWVLPNYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 2425..3231
/note="ORF3"
/codon_start=1
/product="minor capsid protein"
/protein_id="AKE31877.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKTLDWSGTRYWAPDARTTTYNAGHFSTPQPSGALPGRANLRATVPARGSSSTSS
NSSIATSVYSNQTTSTRLGPTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 cactatgatg cagactactc tcgatgggat tcaacacaac agagagccgt gttggcagca
61 gctctagaaa tcatggttaa attctcccca gaaccacatt tggctcaggt agtcgcggaa
121 gatcttcttt ctcctagcgt ggtggacgtg ggcgacttca caatatcaat caacgagggt
181 cttccctctg gggtgccctg cacctcccaa tggaactcca tcgcccactg gcttctcact
241 ctctgtgcgc tctctgaagt cacaaacctg tctcctgata ccatacaggc taattccctc
301 ttctcttttt atggtgatga tgaaattgtt agcacagaca taaaattgga cccagagaaa
361 ttgacagcaa agctcagaga atatgggtta aaaccaaccc gccctgacaa aactgaagga
421 ccccttgtca tctctgaaga cctgaatggc ctaactttcc tgcggagaac tgtgacccgc
481 gacccagctg gttggtttgg aaaactggag cagagttcaa tactcaggca aatgtactgg
541 actaggggtc ccaaccatgg agacccatct gaaacaatga ttccacactc ccaaagaccc
601 atacaattga tgtccctact gggggaggcc gctctccacg gcccagcatt ttacagcaaa
661 atcagcaaat tggtcattgc agagctaaaa gaaggtggta tggattttta cgtgcccaga
721 caagagccaa tgttcagatg gatgagattc tcagatctga gcacgtggga gggcgatcgc
781 aatctggctc ccagttttgt gaatgaagat ggcgtcgagt gacgccaacc catctgatgg
841 gtccacagcc aacctcgtcc cagaggtcaa caatgaggtt atggctttgg agcccgtagt
901 tggtgccgct attgcggcac ctgtagcggg ccagcaaaat gtaattgacc cctggattag
961 aaacaatttt gtacaagccc ctggtggaga gtttacagta tcccctagaa acgctccagg
1021 tgaaatactg tggagcgcgc ccttaggccc tgatttgaat ccctaccttt cccatttggc
1081 cagaatgtac aatggttatg caggtggctt tgaagtgcag gtaatcctcg cggggaatgc
1141 gttcaccgcc gggaaaatca tatttgcagc agtcccacca aatttcccaa ctgaaggttt
1201 gagccccagc caagtcacta tgttccccca cataatagta gatgttaggc aattggaacc
1261 tgtgttgatc cccttacccg atgttaggaa taatttctac cattataatc agtcaaatga
1321 ccccaccatc aaattgatag caatgttgta cacaccactt agggctaata atgcccggga
1381 cgatgtcttc acagtttctt gtcgagttct cacgagacca tcccccgatt ttgatttcat
1441 atttttggtg ccacccacag ttgaatcaag aactaaacca ttctctgtcc cagttttaac
1501 tgttgaggag atgaccaatt caaggttccc cattcctctg gaaaagttgt tcacgggccc
1561 cagtagtgcc tttgttgttc aaccacaaaa cggcaggtgc acgactgatg gcgtgctcct
1621 aggtactacc caactgtctc ctgtcaacat ctgcaccttc agaggggatg tcacccacat
1681 ttcaggcagt cgtaactaca caatgaattt ggcctcccaa aattggaaca gttacgatcc
1741 aacagaagag atcccagccc ccctaggaac tccagatttc gtggggaaga ttcaaggtgt
1801 gctcacccaa accacaagga cagatggttc gacccgcggc cacaaagcta cagtgtacac
1861 tgggagcgcc gacttttctc caaaactggg tagggttcaa tttgccactg acacagacaa
1921 tgattttgaa actaaccaaa acacaaagtt caccccagtc ggtgttatcc aggatggtgg
1981 taccacccac cgaaatgaac cccaacaatg ggtgctccca aattactcag gcagaaacac
2041 tcataatgtg cacctggccc ccgctgtagc ccccactttc ccgggcgagc agctcctctt
2101 cttcagatct accatgcccg gatgcagcgg gtaccccaac atggatttgg actgcctgct
2161 tccccaggaa tgggtgcagt atttctacca ggaggcagcc ccagcacaat ctgatgtggc
2221 actgttaaga ttcgtgaatc cagatacagg tagggttttg tttgagtgta agcttcataa
2281 atcaggttat gttacagtgg ctcacactgg ccaacatgat ttagttatcc cccccaatgg
2341 ttattttaga tttgattcct gggtcaacca gttctacaca cttgccccca tgggaaatgg
2401 gacggggcgt agacgtgcat tataatggct ggagccttct ttgctgggtt ggcatctgac
2461 gtccttggct ctggacttgg ttccctaatc aatgctgggg ctggggccat caaccaaaaa
2521 gttgaatttg aaaacaacag aaaattgcaa caagcttcct tccaatttag tagcaatcta
2581 caacaggctt cctttcaaca tgacaaagag atgctccaag cacaaattga ggccaccaaa
2641 aagttgcaac aggaaatgat gagagttaaa caagcaatgc tcctagaggg tggattctct
2701 gagacagatg cagcccgtgg ggcaatcaac gcccccatga caaaaacttt ggattggagc
2761 ggaacaaggt actgggctcc cgatgctagg actacaacat acaatgcagg tcacttttcc
2821 acccctcaac cctcgggggc actaccagga agagctaatc ttagggctac tgtccccgcc
2881 cggggttcct ccagcacgtc ttctaactct tctattgcta cttctgtgta ttcaaatcaa
2941 accacctcga cgagacttgg tcctacagct ggttctggta ccagtgtctc gagcctcccg
3001 tcaactgcaa ggactaggag ctgggttgag gatcaaaata ggaatttgtc acctttcatg
3061 aggggggccc acaacatctc gtttgtcacc ccaccatcta gcagatcctc tagccaaggc
3121 acagtctcaa ccgtgcccaa agaagttttg gactcctgga ctggcgcttt caacacgcgc
3181 aggcagcctc tcttcgctca cattcgcaag cgaggggagt cacgggtgta atgtgaaaag
3241 acaaaattga ttatcttcct tttcttttgt gtctttt
//