Typing tool
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Typing tool
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Complete norovirus genomes
| KP244321 | GII.4 New Orleans | |
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| GII.P4 New Orleans |
ORF1: 1..822
ORF2: 803..2425
ORF3: 2425..3231
LOCUS KP244321 3277 bp RNA linear VRL 27-APR-2015
DEFINITION Norovirus Hu/GII.4/PA59/2012/ITA isolate PA59/2012 RNA-dependent
RNA polymerase gene, partial cds; and major capsid protein and
minor capsid protein genes, complete cds.
ACCESSION KP244321
VERSION KP244321.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/PA59/2012/ITA
ORGANISM Norovirus Hu/GII.4/PA59/2012/ITA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3277)
AUTHORS Medici,M.C., Giammanco,G.M., Tummolo,F. and Martella,V.
TITLE Molecular epidemiological dynamics of the norovirus GII.4 pandemic
variant New Orleans 2009 in Italy
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3277)
AUTHORS Medici,M.C., Giammanco,G.M., Tummolo,F. and Martella,V.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2014) Unit of Microbiology and Virology,
Departement of Clinical and Experimental Medicine, University of
Parma, Viale A. Gramsci, 14, Parma, Parma 43126, Italy
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3277
/organism="Norovirus Hu/GII.4/PA59/2012/ITA"
/mol_type="genomic RNA"
/isolate="PA59/2012"
/isolation_source="stool"
/db_xref="taxon:1644049"
/country="Italy"
/collection_date="2012"
/collected_by="GM Giammanco"
/note="genotype: GII.4 New Orleans 2009"
CDS <1..822
/note="ORF1"
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="AKE31872.1"
/translation="HYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLS
PSVVDVGDFTISITEGLPSGVPCTSQWNSIAHWLLTLCALSEVSNLSPDTIQANSLFS
FYGDDEIVSTDIKLDPEKLTTKLREYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTR
DPAGWFGKLEQSSILRQMYWTRGPNHGDPSETMIPHSQRPIQLMSLLGEAALHGPAFY
SKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 803..2425
/note="ORF2"
/codon_start=1
/product="major capsid protein"
/protein_id="AKE31873.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHISGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTNGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG
STTPRNEPQQWMLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 2425..3231
/note="ORF3"
/codon_start=1
/product="minor capsid protein"
/protein_id="AKE31874.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGATNQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKTLDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGGANLRATVPARGSSSTPS
NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 cactatgatg cagactactc tcgatgggat tcaacacaac agagagccgt gttggcagca
61 gctcttgaaa tcatggttaa attctcccca gaaccacatt tggctcaggt agtcgcggaa
121 gaccttcttt ctcctagcgt agtggacgtg ggcgacttca caatatcaat caccgagggt
181 cttccctctg gggtgccctg cacctcccaa tggaactcca tcgcccactg gcttctcact
241 ctctgtgcgc tctccgaagt ctcaaaccta tcccctgata ccatacaggc taactccctc
301 ttctcttttt atggtgatga tgaaattgtt agcacagaca taaaattgga cccagagaaa
361 ttgacaacaa agctcagaga atatgggtta aaaccaaccc gccctgacaa aactgaagga
421 ccccttgtca tctctgaaga cctgaatggc ctaactttcc tgcggagaac tgtgacccgc
481 gacccagctg gttggtttgg aaaactggag cagagttcaa tactcaggca aatgtactgg
541 actaggggtc ccaaccatgg agacccatct gaaacaatga ttccacactc ccaaagaccc
601 atacaattga tgtccctact gggggaagcc gctctccacg gcccagcctt ttatagcaaa
661 atcagcaagt tggtcattgc agagctaaaa gaaggtggca tggattttta cgtgcccaga
721 caagagccaa tgttcagatg gatgagattc tcagatctga gcacgtggga gggcgatcgc
781 aatctggctc ccagttttgt gaatgaagat ggcgtcgagt gacgccaacc catctgatgg
841 gtccacagcc aacctcgtcc cagaggtcaa caatgaggtt atggctttgg agcccgtagt
901 tggtgccgct attgcggcac ctgtggcggg ccaacaaaat gtaattgacc cctggattag
961 aaataatttt gtacaagccc ctggtggaga gtttacagta tcccctagaa acgctccagg
1021 tgaaatatta tggagcgcgc ccttaggccc tgatctgaat ccctaccttt ctcatttggc
1081 cagaatgtac aatggttatg caggtggttt tgaagtgcag gtaatcctcg cggggaacgc
1141 gttcaccgcc gggaaaatca tatttgcagc agtcccacca aatttcccaa ctgaaggttt
1201 gagccccagc caggtcacta tgttccccca tataatagtg gatgttaggc aattggagcc
1261 tgtgttgatc cccttacccg atgttaggaa taatttctac cattataatc aatcaaatga
1321 ccccaccatc aaattgatag caatgttgta cacaccactt agggctaata atgctgggga
1381 cgacgtcttc acagtttctt gtcgagttct tacgagacca tcccccgatt ttgatttcat
1441 atttttggtg ccacccacag ttgaatcaag aactaaacca ttctctgtcc cagttttaac
1501 tgttgaggag atgaccaatt caaggttccc cattcctttg gaaaagttgt tcacgggccc
1561 cagtagtgcc tttgttgttc aaccacaaaa tggcaggtgc acgactgatg gcgtgctcct
1621 aggtactacc caactgtccc ctgtcaacat ctgcaccttc agaggggatg tcacccatat
1681 ttcaggcagt cgtaactaca caatgaattt ggcctcccaa aactggaaca gttacgatcc
1741 aacagaagaa atcccagccc ctctaggaac tccagatttc gtggggaaga ttcaaggtgt
1801 gctcacccaa accacaagga caaatggctc gacccgcggc cacaaagcta cagtgtacac
1861 tgggagcgcc gacttttctc caaaactggg tagagttcaa tttgccactg acacagacaa
1921 tgattttgaa actaaccaaa acacaaagtt caccccagtc ggtgttatcc aggatggtag
1981 taccaccccc cgaaatgaac cccaacaatg gatgctccca agttactcag gaagaaacac
2041 tcataatgtg cacctggccc ccgctgtagc ccctactttc ccgggcgagc agctcctctt
2101 cttcagatct actatgcccg gatgcagcgg gtaccccaac atggatttgg actgtctgct
2161 cccccaggaa tgggtgcagt acttctacca ggaggcagcc ccagcacaat ctgatgtggc
2221 tctgttgaga tttgtgaatc cagacacagg tagggttttg tttgagtgca agcttcataa
2281 atcaggctat gttacagtgg ctcacactgg ccaacatgat ttggttatcc cccccaatgg
2341 ttattttaga tttgattcct gggtcaacca gttttacaca cttgccccca tgggaaatgg
2401 gacggggcgt agacgtgcat tataatggct ggagctttct ttgctggatt ggcatctgac
2461 gtccttggct ctggacttgg ttccctaatc aatgctggag ctggggccac caaccaaaaa
2521 gttgaatttg aaaataacag aaaattgcaa caggcttcct tccaatttag tagcaatcta
2581 caacaagctt cctttcaaca tgacaaagag atgctccaag cacaaattga ggccaccaaa
2641 aagttgcaac aggaaatgat gagagttaaa caagcaatgc tcctagaggg tgggttctct
2701 gagacagatg cagcccgtgg ggcaatcaac gcccccatga caaaaacttt ggactggagc
2761 gggacaaggt actgggctcc cgacgctagg actacaacat ataatgcagg ccgcttttcc
2821 acccctcaac cctcgggggc actgccagga ggagctaatc ttagggccac tgtccccgcc
2881 cggggttcct ccagcacgcc ttctaactct tctatcgcta cttctgtgta ttcaaatcaa
2941 accacctcaa cgagacttgg ttctacagct ggttctggta ccagtgtctc gagcctcccg
3001 tcaactgcaa ggactaggag ctgggttgag gatcaaaata ggaatttgtc acctttcatg
3061 aggggggccc acaacatctc gtttgtcacc ccaccatcta gcagatcctc tagccaaggc
3121 acagtctcaa ccgtgcccaa agaagttttg gactcctgga ctggcgcttt caacacgcgc
3181 aggcagcctc tcttcgctca cattcgcaag cgaggggagt cacgggcgta atgtgaaaag
3241 acaaaattga ttatctttct tttctttagt gtctttt
//