Typing tool
|
Complete norovirus genomes
KP244320 | GII.4 New Orleans | ||
---|---|---|---|
GII.P4 New Orleans |
ORF1: 1..822 ORF2: 803..2425 ORF3: 2425..3231LOCUS KP244320 3277 bp RNA linear VRL 27-APR-2015 DEFINITION Norovirus Hu/GII.4/PA330/2011/ITA isolate PA330/2011 RNA-dependent RNA polymerase gene, partial cds; and major capsid protein and minor capsid protein genes, complete cds. ACCESSION KP244320 VERSION KP244320.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/PA330/2011/ITA ORGANISM Norovirus Hu/GII.4/PA330/2011/ITA Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3277) AUTHORS Medici,M.C., Giammanco,G.M., Tummolo,F. and Martella,V. TITLE Molecular epidemiological dynamics of the norovirus GII.4 pandemic variant New Orleans 2009 in Italy JOURNAL Unpublished REFERENCE 2 (bases 1 to 3277) AUTHORS Medici,M.C., Giammanco,G.M., Tummolo,F. and Martella,V. TITLE Direct Submission JOURNAL Submitted (05-DEC-2014) Unit of Microbiology and Virology, Departement of Clinical and Experimental Medicine, University of Parma, Viale A. Gramsci, 14, Parma, Parma 43126, Italy COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3277 /organism="Norovirus Hu/GII.4/PA330/2011/ITA" /mol_type="genomic RNA" /isolate="PA330/2011" /isolation_source="stool" /db_xref="taxon:1644048" /country="Italy" /collection_date="2011" /collected_by="GM Giammanco" /note="genotype: GII.4 New Orleans 2009" CDS <1..822 /note="ORF1" /codon_start=1 /product="RNA-dependent RNA polymerase" /protein_id="AKE31869.1" /translation="HYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLS PSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFS FYGDDEIVSTDIKLDPEKLTTKLREYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTR DPAGWFGKLEQSSTLRQMYWTRGPNHGDPSETMIPHSQRPIQLMSLLGEAALHGPAFY SKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 803..2425 /note="ORF2" /codon_start=1 /product="major capsid protein" /protein_id="AKE31870.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGASIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLPHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYYQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHISGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRTNGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG STTPRNESQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 2425..3231 /note="ORF3" /codon_start=1 /product="minor capsid protein" /protein_id="AKE31871.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMIRVKQAMLLEGGFSETDAARGAIN APMTKTLDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRATVPARGSSSTPS NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA" ORIGIN 1 cactatgatg cagactactc tcgatgggat tcaacacaac agagagccgt gttggcagca 61 gctcttgaaa tcatggttaa attctcccca gaaccacatt tggctcaggt agtcgcggaa 121 gaccttcttt ctcctagcgt agtggacgtg ggcgacttca caatatcaat caacgagggt 181 cttccctctg gggtgccctg cacctcccaa tggaactcca tcgcccactg gcttctcact 241 ctctgtgcgc tctccgaagt cacaaaccta tcccctgata ccatacaggc taactccctc 301 ttctcttttt atggtgatga tgaaattgtt agcacagaca taaaattgga cccagagaaa 361 ttgacaacaa agctcagaga atatgggtta aaaccaaccc gccctgacaa aactgaagga 421 ccccttgtca tctctgaaga cctgaatggc ctaactttcc tgcggagaac tgtgacccgc 481 gacccagctg gttggtttgg aaaactggag cagagttcaa cactcaggca aatgtactgg 541 actaggggtc ccaaccatgg agacccatct gaaacaatga ttccacactc ccaaagaccc 601 atacaattga tgtccctact gggggaagcc gctctccacg gcccagcctt ttatagcaaa 661 atcagcaagt tggtcattgc agagctaaaa gaaggtggca tggattttta cgtgcccaga 721 caagagccaa tgttcagatg gatgagattc tcagatctga gcacgtggga gggcgatcgc 781 aatctggctc ccagttttgt gaatgaagat ggcgtcgagt gacgccaacc catctgatgg 841 gtccacagcc aacctcgtcc cagaggtcaa caatgaggtt atggctttgg agcccgtagt 901 tggtgcctct attgcggcac ctgtggcggg ccaacaaaat gtaattgacc cctggattag 961 aaataatttt gtacaagccc ctggtggaga gtttacagta tcccctagaa acgctccagg 1021 tgaaatatta tggagcgcgc ccttaggccc tgatctgaat ccctaccttc ctcatttggc 1081 cagaatgtac aatggttatg caggtggttt tgaagtgcag gtaatcctcg cggggaacgc 1141 gttcaccgcc gggaaaatca tatttgcagc agtcccacca aatttcccaa ctgaaggttt 1201 gagccccagc caggtcacta tgttccccca tataatagtg gatgttaggc aattggagcc 1261 tgtgttgatc cccttacccg atgttaggaa taatttctac cattattatc aatcaaatga 1321 ccccaccatc aaattgatag caatgttgta cacaccactt agggctaata atgctgggga 1381 cgacgtcttc acagtttctt gtcgagttct tacgagacca tcccccgatt ttgatttcat 1441 atttttggtg ccacccacag ttgaatcaag aactaaacca ttctctgtcc cagttttaac 1501 tgttgaggag atgaccaatt caaggttccc cattcctttg gaaaagttgt tcacgggccc 1561 cagtagtgcc tttgttgttc aaccacaaaa tggcaggtgc acgactgatg gcgtgctcct 1621 aggtactacc caactgtccc ctgtcaacat ctgcaccttc agaggggatg tcacccatat 1681 ttcaggcagt cgtaactaca caatgaattt ggcctcccaa aactggaaca gttacgatcc 1741 aacggaagag atcccagccc ctctaggaac tccagatttc gtggggaaga ttcaaggtgt 1801 gctcacccaa accacaagga caaatggctc gacccgcggc cacaaagcta cagtgtacac 1861 tgggagcgcc gacttttctc caaaactggg tagagttcaa tttgccactg acacagacaa 1921 tgattttgaa actaaccaaa acacaaagtt caccccagtc ggtgttatcc aggatggtag 1981 taccaccccc cgaaatgaat cccaacaatg ggtgctccca agttactcag gaagaaacac 2041 tcataatgtg cacctggccc ccgctgtagc ccctactttc ccgggcgagc agctcctctt 2101 cttcagatct actatgcccg gatgcagcgg gtaccccaac atggatttgg actgtctgct 2161 cccccaggaa tgggtgcagt acttctacca ggaggcagcc ccagcacaat ctgatgtggc 2221 tctgttaaga tttgtgaatc cagacacagg tagggttttg tttgagtgca agcttcataa 2281 atcaggctat gttacagtgg ctcacactgg ccaacatgat ttggttatcc cccccaatgg 2341 ttattttaga tttgattcct gggtcaacca gttttacaca cttgccccca tgggaaatgg 2401 gacggggcgt agacgtgcat tataatggct ggagctttct ttgctggatt ggcatctgac 2461 gtccttggct ctggacttgg ttccctaatc aatgctgggg ctggggccat caaccaaaaa 2521 gttgaatttg aaaataacag aaaattgcaa caggcttcct tccaatttag tagcaatcta 2581 caacaagctt cctttcaaca tgacaaagag atgctccaag cacaaattga ggccaccaaa 2641 aagttgcaac aggaaatgat aagagttaag caagcaatgc tcctagaggg tggattctct 2701 gagacagatg cagcccgtgg ggcaatcaac gcccccatga caaaaacttt ggactggagc 2761 gggacaaggt actgggctcc cgatgctagg actacaacat ataatgcagg ccgcttttcc 2821 acccctcaac cctcgggggc actgccagga agagctaatc ttagggccac tgtccccgcc 2881 cggggttcct ccagcacgcc ttctaactct tctattgcta cttctgtgta ttcaaatcaa 2941 accacctcaa cgagacttgg ttctacagct ggttctggta ccagtgtctc gagcctcccg 3001 tcaactgcaa ggactaggag ctgggttgag gatcaaaata ggaatttgtc acctttcatg 3061 aggggggccc acaacatctc gtttgtcacc ccaccatcta gcagatcctc tagccaaggc 3121 acagtctcaa ccgtgcccaa agaagttttg gactcctgga ctggcgcttt caacacgcgc 3181 aggcagcctc tcttcgctca cattcgcaag cgaggggagt cacgggcgta atgtggaaag 3241 acaaaattga ttatctttct tttctttagt gtctttt //