Typing tool
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Typing tool
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Complete norovirus genomes
| KP244319 | GII.4 New Orleans | |
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| GII.P4 New Orleans |
ORF1: 1..822
ORF2: 803..2425
ORF3: 2425..3231
LOCUS KP244319 3277 bp RNA linear VRL 27-APR-2015
DEFINITION Norovirus Hu/GII.4/PA278/2011/ITA isolate PA278/2011 RNA-dependent
RNA polymerase gene, partial cds; and major capsid protein and
minor capsid protein genes, complete cds.
ACCESSION KP244319
VERSION KP244319.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/PA278/2011/ITA
ORGANISM Norovirus Hu/GII.4/PA278/2011/ITA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3277)
AUTHORS Medici,M.C., Giammanco,G.M., Tummolo,F. and Martella,V.
TITLE Molecular epidemiological dynamics of the norovirus GII.4 pandemic
variant New Orleans 2009 in Italy
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3277)
AUTHORS Medici,M.C., Giammanco,G.M., Tummolo,F. and Martella,V.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2014) Unit of Microbiology and Virology,
Departement of Clinical and Experimental Medicine, University of
Parma, Viale A. Gramsci, 14, Parma, Parma 43126, Italy
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3277
/organism="Norovirus Hu/GII.4/PA278/2011/ITA"
/mol_type="genomic RNA"
/isolate="PA278/2011"
/isolation_source="stool"
/db_xref="taxon:1644046"
/country="Italy"
/collection_date="2011"
/collected_by="GM Giammanco"
/note="genotype: GII.4 New Orleans 2009"
CDS <1..822
/note="ORF1"
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="AKE31866.1"
/translation="HYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLS
PSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFS
FYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTR
DPAGWFGKLEQSSILRQMYWTRGPNHGDPSETMIPHSQRPIQLMSLLGEAALHGPAFY
SKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 803..2425
/note="ORF2"
/codon_start=1
/product="major capsid protein"
/protein_id="AKE31867.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVSIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIPGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRANGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG
STTPRNEPQQWVLPSYSGRNIHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 2425..3231
/note="ORF3"
/codon_start=1
/product="minor capsid protein"
/protein_id="AKE31868.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKTLDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRATVPARGSSSTSP
NSSITTSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRDLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 cactatgatg cagactactc tcgatgggat tcgacacaac agagagccgt gttggcagca
61 gctctcgaaa tcatggttaa attctcccca gaaccacatt tggctcaggt agtcgcggaa
121 gaccttcttt ctcctagcgt ggtggacgtg ggcgacttca caatatcaat caacgagggt
181 cttccctctg gggtgccctg cacctcccaa tggaactcca tcgcccactg gcttctcact
241 ctctgtgcgc tctccgaagt cacaaaccta tcccccgaca ccatacaggc taactccctc
301 ttctcttttt atggtgatga tgaaattgtt agcacagaca taaaattgga cccagagaaa
361 ttgacagcaa agctcagaga atatgggtta aaaccaaccc gtcctgacaa aactgaagga
421 ccccttgtca tctctgaaga cctgaatggc ctaactttcc tgcggagaac tgtgacccgc
481 gacccagctg gttggtttgg aaaactggag cagagttcaa tactcaggca aatgtactgg
541 actaggggtc ccaaccatgg agacccatct gaaacaatga ttccacactc ccagagaccc
601 atacaattga tgtccctact gggggaggcc gctctccacg gcccagcctt ttatagcaaa
661 atcagcaagt tggtcattgc agagctaaaa gaaggtggca tggattttta cgtgcccaga
721 caagagccaa tgttcagatg gatgagattc tcagatctga gcacgtggga gggcgatcgc
781 aatctggctc ccagttttgt gaatgaagat ggcgtcgagt gacgccaacc catctgatgg
841 gtccacagcc aacctcgtcc cagaggtcaa caatgaggtt atggctttgg agcccgtggt
901 tggcgccgcc attgcggcac ctgtagcggg ccaacaaaat gtaattgacc cctggattag
961 aaacaatttt gtacaagccc ctggtggaga gtttacagta tcccctagaa acgctccagg
1021 tgaaatatta tggagcgcgc ccttaggccc tgacctgaat ccctaccttt cccatttggc
1081 cagaatgtac aatggttatg caggtggttt tgaagtgcag gtaatcctcg cggggaacgc
1141 gttcaccgcc gggaaaatca tatttgcagc agtcccacca aatttcccaa ctgaaggttt
1201 gagccccagc caggtcacta tgtttcccca tataatagta gatgttaggc aattggaacc
1261 tgtgtcgatc cccttacccg atgttaggaa taatttctat cattataatc aatcaaatga
1321 ccccaccatc aaattgatag caatgttgta cacaccactt agggctaata atgctgggga
1381 cgatgtcttc acagtttctt gtcgagttct cacgagacca tcccccgatt ttgatttcat
1441 atttttggtg ccacccacag ttgaatcaag aactaaacca ttctctgtcc cagttttaac
1501 tgttgaggag atgaccaatt caaggttccc cattcctttg gaaaagttgt tcacgggccc
1561 cagtagtgcc tttgttgttc aaccacaaaa tggcaggtgc acgactgatg gcgtgctcct
1621 aggtactacc caattgtccc ctgtcaacat ctgcaccttc agaggggatg tcacccatat
1681 tccaggcagt cgtaactaca caatgaattt ggcctcccaa aattggaaca gttacgatcc
1741 aacagaagaa atcccagccc ctctaggaac tccagatttc gtggggaaga ttcaaggtgt
1801 gctcacccaa accacaaggg caaatggctc gacccgcggc cacaaagcta cagtgtacac
1861 tgggagcgcc gacttttctc caaaactggg tagagttcaa tttgccactg acacagacaa
1921 tgattttgaa actaaccaaa acacaaagtt caccccagtc ggtgttatcc aggatggcag
1981 caccaccccc cgaaatgaac cccaacaatg ggtactccca agttactcag gcagaaacat
2041 tcataatgtg cacctggctc ccgctgtagc ccccactttc ccgggcgaac agctcctctt
2101 cttcagatct actatgcccg gatgcagcgg gtaccccaac atggatttgg actgtctgct
2161 cccccaggaa tgggtgcagt acttctacca ggaggcagcc ccagcacaat ctgatgtggc
2221 tctgttaaga tttgtgaatc cagacacagg tagggttttg tttgagtgta agcttcataa
2281 atcaggctat gttacagtgg ctcacactgg ccaacatgat ttggttatcc cccccaatgg
2341 ttattttaga tttgattcct gggtcaacca gttctacaca cttgccccta tgggaaatgg
2401 gacggggcgt agacgtgcat tataatggct ggagctttct ttgctggatt ggcatctgac
2461 gtccttggct ctggacttgg ttccctaatc aatgctgggg ctggggccat caaccaaaaa
2521 gttgaatttg aaaataacag aaaattgcaa caagcttcct tccaatttag tagcaatcta
2581 caacaagctt cctttcaaca tgacaaagag atgctccaag cacaaattga ggccaccaaa
2641 aagttgcaac aggaaatgat gagagttaaa caagcaatgc tcctagaggg tggattctct
2701 gagacagatg cggcccgtgg ggcaatcaac gcccccatga caaaaacttt ggactggagc
2761 ggaacaaggt actgggctcc cgatgctagg accacaacat ataatgcagg ccgcttttcc
2821 acccctcaac cctcgggggc actaccagga agagctaatc ttagggctac tgtccccgcc
2881 cggggttcct ccagcacgtc tcctaattct tctattacta cttccgtgta ttcaaatcaa
2941 accacctcaa cgagacttgg ttctacagct ggttccggta ccagtgtctc gagcctcccg
3001 tcaactgcaa ggactaggag ttgggttgag gatcaaaata gggacttgtc acctttcatg
3061 aggggggccc acaacatctc gtttgtcacc ccaccatcta gcagatcctc tagccaaggc
3121 acagtctcaa ccgtgcccaa agaagttttg gactcctgga ctggcgcttt caacacgcgc
3181 aggcagcctc tcttcgctca cattcgcaag cgaggggagt cacgggcgta atgtgaaaag
3241 acaaaattga ttatctttct tttctttagt gtctttt
//