Typing tool
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Complete norovirus genomes
KP244318 | GII.4 New Orleans | ||
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GII.P4 New Orleans |
ORF1: 1..822 ORF2: 803..2425 ORF3: 2425..3231LOCUS KP244318 3277 bp RNA linear VRL 27-APR-2015 DEFINITION Norovirus Hu/GII.4/PA288/2011/ITA isolate PA288/2011 RNA-dependent RNA polymerase gene, partial cds; and major capsid protein and minor capsid protein genes, complete cds. ACCESSION KP244318 VERSION KP244318.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/PA288/2011/ITA ORGANISM Norovirus Hu/GII.4/PA288/2011/ITA Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3277) AUTHORS Medici,M.C., Giammanco,G.M., Tummolo,F. and Martella,V. TITLE Molecular epidemiological dynamics of the norovirus GII.4 pandemic variant New Orleans 2009 in Italy JOURNAL Unpublished REFERENCE 2 (bases 1 to 3277) AUTHORS Medici,M.C., Giammanco,G.M., Tummolo,F. and Martella,V. TITLE Direct Submission JOURNAL Submitted (05-DEC-2014) Unit of Microbiology and Virology, Departement of Clinical and Experimental Medicine, University of Parma, Viale A. Gramsci, 14, Parma, Parma 43126, Italy COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3277 /organism="Norovirus Hu/GII.4/PA288/2011/ITA" /mol_type="genomic RNA" /isolate="PA288/2011" /isolation_source="stool" /db_xref="taxon:1644047" /country="Italy" /collection_date="2011" /collected_by="GM Giammanco" /note="genotype: GII.4 New Orleans 2009" CDS <1..822 /note="ORF1" /codon_start=1 /product="RNA-dependent RNA polymerase" /protein_id="AKE31863.1" /translation="HYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLS PSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFS FYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTR DPAGWFGKLEQSSILRQMYWTRGPNHGDPSETMIPHSQRPIQLMSLLGEAALHGPAFY SKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 803..2425 /note="ORF2" /codon_start=1 /product="major capsid protein" /protein_id="AKE31864.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNIRTFRGDVTHIPGSRNYTMNSASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRANGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG STTPRNEPQQWVLPSYSGRNIHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 2425..3231 /note="ORF3" /codon_start=1 /product="minor capsid protein" /protein_id="AKE31865.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SSQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKTLDWSGTRYWAPDARTTTYNAGRFPTPQPSGALPGRANLRATVPARGSSSTSP NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRDLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA" ORIGIN 1 cactatgatg cagattactc tcgatgggat tcgacacaac agagagccgt gttggcagca 61 gctctcgaaa tcatggttaa attctcccca gaaccacatt tggctcaggt agtcgcggaa 121 gaccttcttt ctcctagcgt ggtggacgtg ggcgacttca caatatcaat caacgagggt 181 cttccctctg gggtgccctg cacctcccaa tggaactcca tcgcccactg gcttctcact 241 ctctgtgcgc tctccgaagt cacaaaccta tcccccgaca ccatacaggc taactccctc 301 ttctcttttt atggtgatga tgaaattgtt agcacagaca taaaattgga cccagagaaa 361 ttgacagcaa agctcagaga atatgggtta aaaccaaccc gtcctgacaa aactgaagga 421 ccccttgtca tctctgaaga cctgaatggc ctaactttcc tgcggagaac tgtgacccgc 481 gacccagctg gttggtttgg aaaactggag cagagttcaa tactcaggca aatgtactgg 541 actaggggtc ccaaccatgg agacccatct gaaacaatga ttccacactc ccagagaccc 601 atacaattga tgtccctact gggggaggcc gctctccacg gcccagcctt ttatagcaaa 661 atcagcaagt tggtcattgc agagctaaaa gaaggtggca tggattttta cgtgcccaga 721 caagagccaa tgttcagatg gatgagattc tcagatctga gcacgtggga gggcgatcgc 781 aatctggctc ccagttttgt gaatgaagat ggcgtcgagt gacgccaacc catctgatgg 841 gtccacagcc aacctcgtcc cagaggtcaa caatgaggtt atggctttgg agcccgtggt 901 tggtgccgcc attgcggcac ctgtagcggg ccaacaaaat gtaattgacc cctggattag 961 aaacaatttt gtacaagccc ctggtggaga gtttacagta tcccctagaa acgctccagg 1021 tgaaatatta tggagcgcgc ccttaggccc tgacctgaat ccctaccttt cccatttggc 1081 cagaatgtac aatggttatg caggtggttt tgaagtgcag gtaatcctcg cggggaacgc 1141 gttcaccgcc gggaaaatca tatttgcagc agtcccacca aatttcccaa ctgaaggttt 1201 gagccccagc caggtcacta tgtttcccca tataatagta gatgttaggc aattggaacc 1261 tgtattgatc cccttacccg atgttaggaa taatttctat cattataatc aatcaaatga 1321 ccccaccatc aaattgatag caatgttgta cacaccactt agggctaata atgctgggga 1381 cgatgtcttc acagtttctt gtcgagttct cacgagacca tcccccgatt ttgatttcat 1441 atttttggtg ccacccacag ttgaatcaag aactaaacca ttctctgtcc cagttttaac 1501 tgttgaggag atgaccaatt caaggttccc cattcctttg gaaaagttgt tcacgggccc 1561 cagtagtgcc tttgttgttc aaccacaaaa tggcaggtgc acgactgatg gcgtgctcct 1621 aggtactacc caattgtccc ctgtcaacat ccgcaccttc agaggggatg tcacccatat 1681 tccaggcagt cgtaactaca caatgaattc ggcctcccaa aattggaaca gttacgatcc 1741 aacagaagaa atcccagccc ctctaggaac tccagatttc gtggggaaga ttcaaggtgt 1801 gctcacccaa accacaaggg caaatggctc gacccgcggc cacaaagcta cagtgtacac 1861 tgggagcgcc gacttttctc caaaactggg tagagttcaa tttgccactg acacagacaa 1921 tgattttgaa actaaccaaa acacaaagtt caccccagtc ggtgttatcc aggatggcag 1981 caccaccccc cgaaatgaac cccaacaatg ggtgctccca agttactcag gcagaaacat 2041 tcataatgtg cacctggccc ccgctgtagc ccccactttc ccgggcgaac agctcctctt 2101 cttcagatct actatgcccg gatgcagcgg gtaccccaac atggatttgg actgtctgct 2161 cccccaggaa tgggtgcagt acttctacca ggaggcagcc ccagcacaat ctgatgtggc 2221 tctgttaaga tttgtgaatc cagacacagg tagggttttg tttgagtgta agcttcataa 2281 atcaggctat gttacagtgg ctcacactgg ccaacatgat ttggttatcc cccccaatgg 2341 ttattttaga tttgattcct gggtcaacca gttctacaca cttgccccta tgggaaatgg 2401 gacggggcgt agacgtgcat tataatggct ggagctttct ttgctggatt ggcatctgac 2461 gtccttggct ctggacttgg ttccctaatc aatgctgggg ctggggccat caaccaaaaa 2521 gttgaatttg aaaataacag aaaattgcaa caagcttcct cccaatttag tagcaatcta 2581 caacaagctt cctttcaaca tgacaaagag atgctccaag cacaaattga ggccaccaaa 2641 aagttgcaac aggaaatgat gagagttaaa caagcaatgc tcctagaggg tggattctct 2701 gagacagatg cagcccgtgg ggcaatcaac gcccccatga caaaaacttt ggactggagc 2761 ggaacaaggt actgggctcc cgatgctagg accacaacat ataatgcagg ccgctttccc 2821 acccctcaac cctcgggggc actaccagga agagctaatc ttagggctac tgtccccgcc 2881 cggggttcct ccagcacgtc tcctaattct tctattgcta cttctgtgta ttcaaatcaa 2941 accacctcaa cgagacttgg ttctacagct ggttctggta ccagtgtctc gagcctcccg 3001 tcaactgcaa ggactaggag ttgggttgag gatcaaaata gggacttgtc acctttcatg 3061 aggggggccc acaacatctc gtttgtcacc ccaccatcta gcagatcctc tagccaaggc 3121 acagtctcaa ccgtgcccaa agaagttttg gactcctgga ctggcgcttt caacacgcgc 3181 aggcagcctc tcttcgctca cattcgcaag cgaggggagt cacgggcgta atgtgaaaag 3241 acaaaattga ttatctttct tttctttagt gtctttt //