Typing tool
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Typing tool
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Complete norovirus genomes
| KP244317 | GII.4 New Orleans | |
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| GII.P4 Yerseke |
ORF1: 1..822
ORF2: 803..2425
ORF3: 2425..3231
LOCUS KP244317 3277 bp RNA linear VRL 27-APR-2015
DEFINITION Norovirus Hu/GII.4/PR328/2013/ITA isolate PR328/2013 RNA-dependent
RNA polymerase gene, partial cds; and major capsid protein and
minor capsid protein genes, complete cds.
ACCESSION KP244317
VERSION KP244317.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/PR328/2013/ITA
ORGANISM Norovirus Hu/GII.4/PR328/2013/ITA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3277)
AUTHORS Medici,M.C., Giammanco,G.M., Tummolo,F. and Martella,V.
TITLE Molecular epidemiological dynamics of the norovirus GII.4 pandemic
variant New Orleans 2009 in Italy
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3277)
AUTHORS Medici,M.C., Giammanco,G.M., Tummolo,F. and Martella,V.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2014) Unit of Microbiology and Virology,
Departement of Clinical and Experimental Medicine, University of
Parma, Viale A. Gramsci, 14, Parma, Parma 43126, Italy
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3277
/organism="Norovirus Hu/GII.4/PR328/2013/ITA"
/mol_type="genomic RNA"
/isolate="PR328/2013"
/isolation_source="stool"
/db_xref="taxon:1644052"
/country="Italy"
/collection_date="2013"
/collected_by="MC Medici"
/note="genotype: GII.4 New Orleans 2009"
CDS <1..822
/note="ORF1"
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="AKE31860.1"
/translation="HYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLS
PSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFS
FYGDDEIVSTDIKLDPEKLTAKLREYGLRPTRPDKTEGPLVISEDLNGLTFLRRSVTR
DPAGWFGKLEQSSILRQMYWTRGPNHGDPSETMIPHSQRPIQLMSLLGEAALHGPAFY
SKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 803..2425
/note="ORF2"
/codon_start=1
/product="major capsid protein"
/protein_id="AKE31861.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRSNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIARLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHISGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTKTNGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG
STTPRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFHTLAPMGNGTGRRRAL"
CDS 2425..3231
/note="ORF3"
/codon_start=1
/product="minor capsid protein"
/protein_id="AKE31862.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKTLDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRATVPTRGSSSTSS
NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 cactatgatg cagactactc tcgatgggat tcaacacaac aaagagctgt gttggcagca
61 gctctagaaa tcatggttaa attctcccca gaaccacatt tggctcaggt agtcgcggaa
121 gaccttcttt ctcctagcgt ggtggacgtg ggcgacttca caatatcaat caacgagggt
181 cttccctctg gggtgccctg cacctcccag tggaactcca tcgcccactg gctgctcact
241 ctctgtgcgc tctctgaagt cacaaacctg tcccctgata ccatacaggc taactccctc
301 ttctcttttt atggtgatga tgagattgtt agcacagaca taaaattgga cccagaaaaa
361 ttgacagcaa agctcagaga atatgggtta agaccaaccc gccctgacaa aactgaagga
421 ccccttgtca tctctgaaga cctgaatggc ctaactttcc tgcggagatc tgtgacccgc
481 gacccagctg gttggtttgg aaaactggag cagagttcaa tactcaggca aatgtactgg
541 actaggggtc ccaaccatgg agacccatct gaaacaatga ttccacactc ccaaagaccc
601 atacaattga tgtccctact gggggaggcc gctcttcacg gcccagcatt ttacagcaaa
661 atcagcaaat tggttattgc agagctaaaa gaaggtggca tggattttta cgtgcccaga
721 caagagccaa tgttcagatg gatgagattc tcagatctga gcacgtggga gggcgatcgc
781 aatctggctc ccagttttgt gaatgaagat ggcgtcgagt gacgccaacc catctgatgg
841 gtccacagcc aacctcgtcc cagaggtcaa caatgaggtt atggctttgg agcccgtagt
901 tggtgccgcc attgcggcac ctgtagcggg ccaacaaaat gtaattgacc cctggattag
961 aagcaatttt gtacaagccc ctggtggaga gttcacagta tcccctagaa acgctccagg
1021 tgaaatacta tggagcgcac ccttaggccc tgatttgaat ccttaccttt cccatttggc
1081 cagaatgtac aatggttatg caggtggttt tgaagtgcag gtaatcctcg cggggaacgc
1141 gttcaccgcc gggaaaatca tatttgcagc agtcccacca aattttccaa ctgaaggttt
1201 gagccccagt caggtcacta tgttccccca cataatagta gatgttaggc aattggaacc
1261 tgtgttgatt cccttacccg atgttaggaa taatttctac cattataatc aatcaaatga
1321 ccccaccatc aaattgatag caaggttgta cacaccactt agggctaata atgccgggga
1381 cgatgtcttc acagtttctt gtcgagtcct cacgagacca tcccccgatt ttgattttat
1441 atttttggtg ccacccacag ttgaatcaag aactaaacca ttctctgtcc cagttttaac
1501 tgttgaggag atgaccaatt caaggttccc cattcctttg gaaaagttgt tcacgggccc
1561 cagtagtgcc tttgttgttc aaccacaaaa cggcagatgc acgactgatg gcgtgctcct
1621 aggtactacc caactgtctc ctgtcaacat ctgcaccttc agaggggatg tcacccacat
1681 ttcaggcagt cgtaactaca caatgaattt ggcttcccaa aattggaaca gttacgatcc
1741 aacagaagaa atcccagccc ctctaggaac tccagatttc gtggggaaga ttcaaggtgt
1801 gctcacccaa accacaaaga cgaatggctc gacccgcggc cacaaagcta cagtgtacac
1861 tgggagcgcc gatttttccc caaaactggg tagagttcaa tttgccactg acacagataa
1921 tgactttgaa actaaccaaa acacaaagtt caccccagtc ggtgttatcc aggatggtag
1981 tactaccccc cgaaatgaac cccaacaatg ggtgctccca agttactcag gcagaaacac
2041 ccataatgta cacctggccc ccgctgtagc ccccactttc ccgggcgagc agctcctctt
2101 cttcagatct actatgcccg gatgcagcgg gtaccccaac atggatctgg actgcctgct
2161 cccccaggag tgggtgcagt atttctatca ggaggcagcc ccagcacaat ctgacgtggc
2221 tctgttaagg tttgtgaatc cagatacagg tagggttttg tttgagtgta agcttcataa
2281 atcaggctat gttacagtgg ctcatactgg ccaacatgat ttggtcatcc cccccaatgg
2341 ttattttaga tttgattcct gggttaacca gttccacaca cttgccccca tgggaaatgg
2401 gacggggcgt agacgtgcac tataatggct ggagctttct ttgctggatt ggcatctgac
2461 gtccttggct ctggacttgg ttccctaatc aatgctgggg ctggggccat caaccaaaaa
2521 gttgaatttg aaaataacag aaaattgcaa caagcttcct tccaatttag tagcaatcta
2581 caacaggctt cctttcaaca tgacaaagag atgctccaag cacaaattga ggccaccaaa
2641 aagttgcaac aggaaatgat gagagttaaa caagcaatgc tcctagaggg tgggttctct
2701 gagacagatg cagcccgtgg ggcaatcaac gcccccatga caaaaacttt ggactggagc
2761 gggacaaggt actgggctcc cgatgctagg actacaacat ataatgcagg ccgcttttcc
2821 acccctcaac cctcgggggc attaccagga agagctaatc ttagggctac tgtccccacc
2881 cggggttcct ccagcacatc ttctaactct tctattgcta cttctgtgta ttcaaatcaa
2941 accacctcaa cgaggcttgg ttctacagct ggttctggta ccagtgtctc gagcctcccg
3001 tcaactgcaa ggactaggag ctgggttgag gatcagaata ggaatttgtc acctttcatg
3061 aggggggccc acaacatctc gtttgtcacc ccaccatcta gcagatcctc tagccaaggc
3121 acagtctcaa ccgtgcccaa agaagttttg gactcctgga ctggcgcttt caacacgcgc
3181 aggcagcctc tcttcgctca tattcgcaag cgaggggagt cacgggcgta atgtgaaaag
3241 acaaaattga ttatctttct tttctttagt gtctttt
//