Typing tool
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Complete norovirus genomes
KP244316 | GII.4 New Orleans | ||
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GII.P4 Yerseke |
ORF1: 1..822 ORF2: 803..2425 ORF3: 2425..3231LOCUS KP244316 3277 bp RNA linear VRL 27-APR-2015 DEFINITION Norovirus Hu/GII.4/PR9474/2011/ITA isolate PR9474/2011 RNA-dependent RNA polymerase gene, partial cds; and major capsid protein and minor capsid protein genes, complete cds. ACCESSION KP244316 VERSION KP244316.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/PR9474/2011/ITA ORGANISM Norovirus Hu/GII.4/PR9474/2011/ITA Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3277) AUTHORS Medici,M.C., Giammanco,G.M., Tummolo,F. and Martella,V. TITLE Molecular epidemiological dynamics of the norovirus GII.4 pandemic variant New Orleans 2009 in Italy JOURNAL Unpublished REFERENCE 2 (bases 1 to 3277) AUTHORS Medici,M.C., Giammanco,G.M., Tummolo,F. and Martella,V. TITLE Direct Submission JOURNAL Submitted (05-DEC-2014) Unit of Microbiology and Virology, Departement of Clinical and Experimental Medicine, University of Parma, Viale A. Gramsci, 14, Parma, Parma 43126, Italy COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3277 /organism="Norovirus Hu/GII.4/PR9474/2011/ITA" /mol_type="genomic RNA" /isolate="PR9474/2011" /isolation_source="stool" /db_xref="taxon:1457692" /country="Italy" /collection_date="2011" /collected_by="MC Medici" /note="genotype: GII.4 New Orleans 2009" CDS <1..822 /note="ORF1" /codon_start=1 /product="RNA-dependent RNA polymerase" /protein_id="AKE31857.1" /translation="HYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLS PSVVDVGDFTISINEGLPSGVPCTSQWSSIAHWLLTLCALSEVTNLSPDTIQANSLFS FYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTR DPAGWFGKLEQSSILRQMYWTRGPNHGDPSETMIPHSQRPIQLMSLLGEAALHGPAFY SKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE" CDS 803..2425 /note="ORF2" /codon_start=1 /product="major capsid protein" /protein_id="AKE31858.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRSNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHISGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKTQGVL TQTTKTNGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG STTPRDEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD RLLPQEWVQYFYQEPAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 2425..3231 /note="ORF3" /codon_start=1 /product="minor capsid protein" /protein_id="AKE31859.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKTLDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRATVPTRGSSSTSS NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARARSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA" ORIGIN 1 cactatgatg cagactactc tcgatgggat tcaacacaac agagagctgt gttggcagca 61 gctctagaaa tcatggttaa attctcccca gaaccgcatt tggctcaggt agtcgcggaa 121 gaccttcttt ctcctagcgt ggtggacgtg ggcgacttca caatatcaat caacgagggt 181 cttccctctg gggtgccctg cacctcccaa tggagctcca tcgcccactg gctgctcact 241 ctctgtgcgc tctctgaagt cacaaacctg tcccctgata ccatacaggc taactccctc 301 ttctcttttt atggtgatga tgaaattgtt agcacagaca taaaattgga cccagagaaa 361 ttgacagcaa agctcagaga atatgggtta aaaccaaccc gccctgacaa aactgaagga 421 ccccttgtca tctctgaaga cctgaatggc ctaactttcc tgcggagaac tgtgacccgc 481 gacccagctg gttggtttgg aaaactggag cagagttcaa tactcaggca aatgtactgg 541 actaggggtc ccaaccatgg agacccatct gaaacaatga ttccacactc ccaaagaccc 601 atacaattga tgtccctact gggggaggcc gctcttcacg gcccagcatt ttacagcaaa 661 atcagcaaat tggttattgc agagctaaaa gaaggtggca tggattttta cgtgcccaga 721 caagagccaa tgttcagatg gatgagattc tcagatctga gcacgtggga gggcgatcgc 781 aatctggctc ccaattttgt gaatgaagat ggcgtcgagt gacgccaacc catctgatgg 841 gtccacagcc aacctcgtcc cagaggtcaa caatgaggtt atggctttgg agcccgtagt 901 tggtgccgcc attgcggcac ctgtagcggg ccaacaaaat gtaattgacc cctggattag 961 aagcaatttt gtacaagccc ctggtggaga gtttacagta tcccccagaa acgctccagg 1021 tgaaatacta tggagcgcac ccttaggccc tgatttgaat ccctacctct cccatttggc 1081 cagaatgtac aatggttatg caggtggttt tgaagtgcag gtaatcctcg cggggaacgc 1141 gttcaccgcc gggaaaatca tatttgcagc agtcccacca aatttcccaa ctgaaggttt 1201 gagccccagt caggtcacta tgttccccca cataatagta gatgttaggc aattggaacc 1261 tgtgttgatt cccttacccg atgttaggaa taatttctac cattataatc aatcaaatga 1321 ccccaccatc aaattgatag caatgttgta cacaccactt agggctaata atgccgggga 1381 cgatgtcttc acagtttctt gtcgagttct cacgagacca tcccccgatt ttgatttcat 1441 atttttggtg ccacccacag ttgaatcaag aactaaacca ttctctgtcc cagttttaac 1501 tgttgaggag atgaccaatt caaggttccc cattcctttg gaaaagttgt tcacgggccc 1561 cagtagtgcc tttgttgttc aaccacaaaa cggcagatgc acgactgatg gcgtgctcct 1621 aggtactacc caactgtctc ccgtcaacat ctgcaccttc agaggggatg tcacccacat 1681 ttcaggcagt cgtaactaca caatgaattt ggcttcccaa aattggaaca gttacgatcc 1741 aacagaagaa atcccagccc ctctaggaac tccagatttc gtggggaaga ctcaaggtgt 1801 gctcacccaa accacaaaga caaatggctc gacccgcggc cacaaagcta cagtgtacac 1861 tgggagcgcc gacttttctc caaaactggg tagagttcaa tttgccactg acacagacaa 1921 tgattttgaa actaaccaaa acacaaagtt caccccagtc ggtgttatcc aggatggtag 1981 tactaccccc cgagatgaac cccagcaatg ggtgctccca agttactcag gcagaaacac 2041 ccataatgta cacctggccc ccgctgtagc ccccactttc ccgggcgagc agctcctctt 2101 cttcagatct actatgcccg gatgcagcgg gtaccccaac atggatctgg accgtctgct 2161 cccccaggag tgggtgcagt atttctatca ggagccagcc ccagcacaat ctgacgtggc 2221 tctgttaaga tttgtgaatc cagatacagg tagggttttg tttgagtgta agcttcataa 2281 atcaggctat gttacagtgg ctcacactgg ccaacatgat ttggttatcc cccccaatgg 2341 ttattttaga tttgattcct gggtcaatca gttctataca cttgccccca tgggaaatgg 2401 gacggggcgt agacgtgcac tataatggct ggagctttct ttgctggatt ggcatctgac 2461 gtccttggct ctggacttgg ttccctaatc aatgctgggg ctggggccat caaccaaaaa 2521 gttgaatttg aaaataacag aaaattgcaa caagcttcct tccaatttag tagcaatcta 2581 caacaggctt cctttcaaca tgacaaagag atgctccaag cacaaattga ggccaccaaa 2641 aagttgcaac aggaaatgat gagagttaaa caagcaatgc tcctagaggg tggattctct 2701 gagacagatg cagcccgtgg ggcaatcaac gcccccatga caaaaacttt ggactggagc 2761 gggacaaggt actgggctcc cgatgctagg actacaacat ataatgcagg ccgcttttcc 2821 acccctcagc cctcgggggc attaccagga agagctaatc ttagggctac tgtccccacc 2881 cggggttcct ccagcacgtc ttctaactct tctattgcta cttctgtgta ttcaaatcaa 2941 accacctcaa cgagacttgg ctctacagct ggttctggta ccagtgtctc gagcctcccg 3001 tcaactgcaa gggctaggag ctgggttgag gatcagaata ggaatttgtc acctttcatg 3061 aggggggccc acaacatctc gtttgtcacc ccaccatcta gtagatcctc tagccaaggc 3121 acagtctcaa ccgtgcccaa agaagttttg gactcctgga ctggcgcttt caacacgcgc 3181 aggcagcctc tcttcgctca tattcgcaag cgaggggagt cacgggcgta atgtgaaaag 3241 acaaaattga ttatctttct tttctttagt gtctttt //