Typing tool
|
Complete norovirus genomes
KP244315 | GII.4 New Orleans | ||
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GII.P4 Yerseke |
ORF1: 1..822 ORF2: 803..2425 ORF3: 2425..3231LOCUS KP244315 3277 bp RNA linear VRL 27-APR-2015 DEFINITION Norovirus Hu/GII.4/PR7841/2011/ITA isolate PR7841/2011 RNA-dependent RNA polymerase gene, partial cds; and major capsid protein and minor capsid protein genes, complete cds. ACCESSION KP244315 VERSION KP244315.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/PR7841/2011/ITA ORGANISM Norovirus Hu/GII.4/PR7841/2011/ITA Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3277) AUTHORS Medici,M.C., Giammanco,G.M., Tummolo,F. and Martella,V. TITLE Molecular epidemiological dynamics of the norovirus GII.4 pandemic variant New Orleans 2009 in Italy JOURNAL Unpublished REFERENCE 2 (bases 1 to 3277) AUTHORS Medici,M.C., Giammanco,G.M., Tummolo,F. and Martella,V. TITLE Direct Submission JOURNAL Submitted (05-DEC-2014) Unit of Microbiology and Virology, Departement of Clinical and Experimental Medicine, University of Parma, Viale A. Gramsci, 14, Parma, Parma 43126, Italy COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3277 /organism="Norovirus Hu/GII.4/PR7841/2011/ITA" /mol_type="genomic RNA" /isolate="PR7841/2011" /isolation_source="stool" /db_xref="taxon:1399982" /country="Italy" /collection_date="2011" /collected_by="MC Medici" /note="genotype: GII.4 New Orleans 2009" CDS <1..822 /note="ORF1" /codon_start=1 /product="RNA-dependent RNA polymerase" /protein_id="AKE31854.1" /translation="HYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLS PSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFS FYGDDEIVSTDIKLDPENLTAKLREYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTR DPAGWFGKLEQSSILRQMYWTRGPNHGDPSETMIPHSQRPIQLMSLLGEAALHGPAFY SKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 803..2425 /note="ORF2" /codon_start=1 /product="major capsid protein" /protein_id="AKE31855.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRSNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FVVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDARQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHISGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTKTDGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG STTPRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 2425..3231 /note="ORF3" /codon_start=1 /product="minor capsid protein" /protein_id="AKE31856.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQAPFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKTLDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRATVPTRGSSSTSS NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA" ORIGIN 1 cactatgatg cagattactc tcgatgggat tcaacacaac agagagctgt gttggcagca 61 gctctagaaa tcatggttaa attctcccca gaaccacatt tggcacaggt agtcgcggaa 121 gaccttcttt ctcctagcgt ggtggacgtg ggcgacttca caatatcaat caacgagggt 181 cttccctctg gggtgccctg cacctcccag tggaactcca tcgcccactg gctgctcact 241 ctctgtgcgc tctctgaagt cacaaacctg tcccctgata ccatacaggc taactccctc 301 ttctcttttt atggtgatga tgaaattgtt agcacagaca taaaattgga cccagagaat 361 ttgacagcaa agctcagaga atatgggtta aaaccaaccc gccctgacaa aactgaagga 421 ccccttgtca tctctgaaga cctgaatggc ctaactttcc tgcggagaac tgtgacccgc 481 gacccagctg gttggtttgg aaaactggag cagagttcaa tactcaggca aatgtactgg 541 actaggggtc ccaaccatgg agacccatct gaaacaatga ttccacactc ccaaagaccc 601 atacaattga tgtccctact gggggaggcc gctcttcacg gcccagcatt ttacagcaaa 661 atcagcaaat tggttattgc agagctaaaa gaaggtggca tggattttta cgtgcccaga 721 caagagccaa tgttcagatg gatgagattc tcagatctga gcacgtggga gggcgatcgc 781 aatctggctc ccagttttgt gaatgaagat ggcgtcgagt gacgccaacc catctgatgg 841 gtccacagcc aacctcgtcc cagaggtcaa caatgaggtt atggctttgg agcccgtagt 901 tggcgccgcc attgcggcac ctgtagcggg ccaacaaaat gtaattgacc cctggattag 961 aagcaatttt gtacaagccc ctggtggaga gtttacagta tcccctagaa acgctccagg 1021 tgaaatacta tggagcgcac ccttaggccc tgatttgaat ccctaccttt cccatttggc 1081 cagaatgtac aatggttatg caggtggttt tgtagtgcag gtaatcctcg cggggaacgc 1141 gttcaccgcc gggaaaatca tatttgcagc agtcccacca aatttcccaa ctgaaggttt 1201 gagccccagt caggtcacta tgttccccca cataatagta gatgctaggc aattggaacc 1261 tgtgttgatt cccttacccg atgttaggaa taatttctac cattataatc aatcaaatga 1321 ccccaccatc aaattgatag caatgttgta cacaccactt agggctaata atgccgggga 1381 cgatgtcttc acagtttctt gtcgagtcct cacgagacca tcccccgatt ttgatttcat 1441 atttttggtg ccacccacag ttgaatcaag aactaaacca ttctctgtcc cagttttaac 1501 tgttgaggag atgaccaatt caaggttccc cattcctttg gaaaagttgt tcacgggccc 1561 cagtagtgcc tttgttgttc aaccacaaaa cggcagatgc acgactgatg gcgtgctcct 1621 aggtactacc caactgtctc ctgtcaacat ctgcaccttc agaggggatg tcacccacat 1681 ttcaggcagt cgtaactaca caatgaattt ggcttcccaa aattggaaca gttacgatcc 1741 aacagaagaa atcccagccc ctctaggaac tccagatttc gtggggaaga ttcaaggtgt 1801 gctcacccaa accacaaaga cagatggctc gacccgcggc cacaaagcta cagtgtacac 1861 tgggagcgcc gacttttctc caaaactggg tagagttcaa tttgccactg acacagacaa 1921 tgattttgaa actaaccaaa acacaaagtt caccccagtc ggtgttatcc aggatggtag 1981 tactaccccc cgaaatgaac cccaacaatg ggtgctccca agttactcag gcagaaacac 2041 ccataatgta cacctggccc ccgctgtagc ccccactttc ccgggcgagc agctcctctt 2101 cttcagatct actatgcccg gatgcagcgg gtaccccaac atggatctgg actgtctgct 2161 cccccaggag tgggtgcagt atttctacca ggaggcagcc ccagcacaat ctgacgtggc 2221 tctgttaaga tttgtgaatc cagatacagg tagggttttg tttgagtgta agcttcataa 2281 atcaggctat gtcacagtgg ctcacaccgg ccaacatgat ttggttatcc cccccaatgg 2341 ttattttaga tttgactcct gggtcaacca gttctacaca cttgccccca tgggaaatgg 2401 gacggggcgt agacgtgcac tataatggct ggagctttct ttgctggatt ggcatctgac 2461 gtccttggct ctggacttgg ttccctgatc aatgctgggg ctggggccat caaccaaaaa 2521 gttgaatttg aaaataacag aaaattgcaa caagcttcct tccaatttag tagcaatcta 2581 caacaggctc cctttcaaca tgacaaagag atgctccaag cacaaattga ggccaccaaa 2641 aagttgcaac aggaaatgat gagagttaaa caagcaatgc tcctagaggg tgggttctct 2701 gagacagatg cagcccgtgg ggcaatcaac gcccccatga caaaaacttt ggactggagc 2761 gggacaaggt actgggctcc cgatgctagg actacaacat ataatgcagg ccgcttttcc 2821 acccctcaac cctcgggggc attaccagga agagctaatc ttagggctac tgtccccacc 2881 cggggttcct ccagcacgtc ttctaactct tctattgcta cttctgtgta ttcaaatcaa 2941 accacctcaa cgagacttgg ttctacagct ggttctggta ccagtgtctc gagcctcccg 3001 tcaactgcaa ggactaggag ctgggttgag gatcagaata ggaatttgtc acctttcatg 3061 aggggggccc acaacatctc gtttgtcacc ccaccatcta gcagatcctc tagccaaggc 3121 acagtctcaa ccgtgcccaa agaagttttg gactcctgga ctggcgcttt caacacgcgc 3181 aggcagcctc tcttcgctca cattcgcaag cgaggggagt cacgggcgta atgtgaaaag 3241 acaaaattga ttatctttct tttctttagt gtctttt //