Typing tool
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Complete norovirus genomes
KP244314 | GII.4 New Orleans | ||
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GII.P4 New Orleans |
ORF1: 1..822 ORF2: 803..2425 ORF3: 2425..3231LOCUS KP244314 3277 bp RNA linear VRL 27-APR-2015 DEFINITION Norovirus Hu/GII.4/PR11471/2011/ITA isolate PR11471/2011 RNA-dependent RNA polymerase gene, partial cds; and major capsid protein and minor capsid protein genes, complete cds. ACCESSION KP244314 VERSION KP244314.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/PR11471/2011/ITA ORGANISM Norovirus Hu/GII.4/PR11471/2011/ITA Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3277) AUTHORS Medici,M.C., Giammanco,G.M., Tummolo,F. and Martella,V. TITLE Molecular epidemiological dynamics of the norovirus GII.4 pandemic variant New Orleans 2009 in Italy JOURNAL Unpublished REFERENCE 2 (bases 1 to 3277) AUTHORS Medici,M.C., Giammanco,G.M., Tummolo,F. and Martella,V. TITLE Direct Submission JOURNAL Submitted (05-DEC-2014) Unit of Microbiology and Virology, Departement of Clinical and Experimental Medicine, University of Parma, Viale A. Gramsci, 14, Parma, Parma 43126, Italy COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..3277 /organism="Norovirus Hu/GII.4/PR11471/2011/ITA" /mol_type="genomic RNA" /isolate="PR11471/2011" /isolation_source="stool" /db_xref="taxon:1644051" /country="Italy" /collection_date="2011" /collected_by="MC Medici" /note="genotype: GII.4 New Orleans 2009" CDS <1..822 /note="ORF1" /codon_start=1 /product="RNA-dependent RNA polymerase" /protein_id="AKE31851.1" /translation="HYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLS PSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFS FYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTR DPAGWFGKLEQSSILRQMYWTRGPNHGDPSETMIPHSQRPIQLMSLLGEAALHGPAFY SKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 803..2425 /note="ORF2" /codon_start=1 /product="major capsid protein" /protein_id="AKE31852.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYVGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFHHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIPGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRTNGSTRGHKATVYTGSADFSPKLGRIQFATDTDNDFETNQNTKFTPVGVIQDG STTPRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 2425..3231 /note="ORF3" /codon_start=1 /product="minor capsid protein" /protein_id="AKE31853.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKTLDWSGTRYWAPDARTTTYNAGRFSTPQPSGALSGRANLRATVPARGSSSTPS NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA" ORIGIN 1 cactatgatg cagactactc tcgatgggat tcaacacaac agagagccgt gttggcagca 61 gctcttgaaa tcatggttaa attctcccca gaaccacatt tggctcaggt agtcgcggaa 121 gaccttcttt ctcctagcgt agtggacgtg ggcgacttca caatatcaat caacgagggt 181 cttccctctg gggtgccctg cacctcccaa tggaactcca tcgcccactg gcttctcact 241 ctctgtgcgc tctccgaagt cacaaaccta tcccctgata ccatacaggc taattccctc 301 ttctcttttt atggtgatga tgaaattgtt agtacagaca taaaattgga cccagagaaa 361 ttgacagcaa agctcagaga atatgggtta aaaccaaccc gccctgacaa aactgaagga 421 ccccttgtca tctctgaaga cctgaatggc ctaactttcc tgcggagaac tgtgacccgc 481 gacccagctg gttggtttgg aaaactggag cagagttcaa tactcaggca aatgtactgg 541 actaggggtc ccaaccatgg agacccatct gaaacaatga ttccacactc ccaaagaccc 601 atacaattga tgtccctact gggggaggcc gctctccacg gcccagcctt ttatagcaaa 661 atcagcaagt tggtcattgc agagctaaaa gaaggtggca tggattttta cgtgcccaga 721 caagagccaa tgttcagatg gatgagattc tcagatctga gcacgtggga gggcgatcgc 781 aatctggctc ccagttttgt gaatgaagat ggcgtcgagt gacgccaacc catctgatgg 841 gtccacagcc aacctcgtcc cagaggtcaa caatgaggtt atggctttgg agcccgtagt 901 tggtgccgcc attgcggcac ctgtggcggg ccaacaaaat gtaattgacc cctggattag 961 aaataatttc gtacaagccc ctggtggaga gtttacagta tcccctagaa acgctccagg 1021 tgaaatatta tggagcgcgc ccttaggccc tgatctgaat ccctaccttt ctcatttggc 1081 cagaatgtac aatggttacg taggtggttt tgaagtgcag gtaatcctcg cggggaacgc 1141 gttcaccgcc gggaaaatca tatttgcagc agtcccacca aatttcccaa ctgaaggttt 1201 gagccccagc caggtcacta tgttccccca tataatagtg gatgttaggc aattggaacc 1261 tgtgttgatc cccttacccg atgttaggaa taatttccac cattataatc aatcaaatga 1321 ccccaccatc aagttgatag caatgttgta cacaccactt agggctaata atgctgggga 1381 cgacgtcttc acagtttctt gtcgagttct tacgagacca tcccccgatt ttgatttcat 1441 atttttggtg ccacccacag ttgaatcaag aactaaacca ttctctgtcc cagttttaac 1501 tgttgaggag atgaccaatt caaggttccc cattcctttg gaaaagttgt tcacgggccc 1561 cagtagtgcc tttgttgttc aaccacaaaa cggcaggtgc acgactgatg gcgtgctcct 1621 aggtactacc caactgtccc ctgtcaacat ctgcaccttc agaggggatg tcacccatat 1681 tccaggcagt cgtaactaca caatgaattt ggcctcccaa aactggaaca gttacgatcc 1741 aacagaagaa atcccagccc ctctgggaac tccagatttc gtggggaaga ttcaaggcgt 1801 gctcacccaa accacaagga caaatggctc gacccgcggc cacaaagcta cagtgtacac 1861 tgggagcgcc gacttttctc caaaactggg tagaattcaa tttgccactg acacagacaa 1921 tgattttgaa accaaccaaa acacaaagtt caccccagtc ggtgttatcc aggatggtag 1981 taccaccccc cgaaatgaac cccaacaatg ggtgctccca agttactcag gcagaaacac 2041 tcataatgtg cacctggccc ccgctgtagc ccccactttc ccgggcgagc agctcctctt 2101 cttcagatct actatgcccg gatgcagcgg gtaccccaac atggatttgg actgtctgct 2161 cccccaggaa tgggtgcagt acttctacca ggaggcagcc ccagcacaat ctgatgtggc 2221 tctgttaaga tttgtgaatc cagacacagg tagggttttg tttgagtgca agcttcataa 2281 atcaggctat gttacagtgg ctcacactgg ccaacatgat ttggttatcc cccccaatgg 2341 ttattttaga tttgattcct gggtcaacca gttttacaca cttgccccca tgggaaatgg 2401 gacggggcgt agacgtgcat tataatggct ggagctttct ttgctggatt ggcatctgac 2461 gtccttggct ctggacttgg ttccctaatc aatgctgggg ctggggccat caaccaaaaa 2521 gttgaatttg aaaataacag aaaattgcaa caagcttcct tccaatttag tagcaatcta 2581 caacaagctt cctttcaaca tgacaaagag atgctccaag cgcaaattga ggccaccaaa 2641 aagttgcaac aggaaatgat gagagttaaa caagcaatgc tcctagaggg tggattctct 2701 gagacagatg cagcccgtgg ggcaatcaac gcccccatga caaaaacttt ggactggagc 2761 gggacaaggt actgggctcc cgatgctagg actacaacat ataatgcagg ccgcttttcc 2821 accccccaac cctcgggggc actgtcagga agagctaatc ttagggccac tgtccccgcc 2881 cggggttcct ccagcacgcc ttctaactct tctattgcta cttctgtgta ttcaaatcaa 2941 accacctcaa cgagacttgg ttctacagct ggttctggta ccagtgtctc gagcctcccg 3001 tcaactgcaa ggactaggag ctgggttgag gatcaaaata ggaatttgtc acctttcatg 3061 aggggggccc acaacatctc gtttgtcacc ccaccatcta gcagatcctc tagccaaggc 3121 acagtctcaa ccgtgcccaa agaagttttg gactcctgga ctggcgcttt caacacgcgc 3181 aggcagcctc tcttcgctca cattcgcaag cgaggggagt cacgggcgta atgtgaaaag 3241 acaaaattga ttatctttct tctctttagt gtctttt //