Typing tool
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Typing tool
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Complete norovirus genomes
| KP244313 | GII.4 New Orleans | |
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| GII.P4 New Orleans |
ORF1: 1..822
ORF2: 803..2425
ORF3: 2425..3231
LOCUS KP244313 3277 bp RNA linear VRL 27-APR-2015
DEFINITION Norovirus Hu/GII.4/PR6876/2010/ITA isolate PR6876/2010
RNA-dependent RNA polymerase gene, partial cds; and major capsid
protein and minor capsid protein genes, complete cds.
ACCESSION KP244313
VERSION KP244313.1
KEYWORDS .
SOURCE Norovirus Hu/GII.4/PR6876/2010/ITA
ORGANISM Norovirus Hu/GII.4/PR6876/2010/ITA
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3277)
AUTHORS Medici,M.C., Giammanco,G.M., Tummolo,F. and Martella,V.
TITLE Molecular epidemiological dynamics of the norovirus GII.4 pandemic
variant New Orleans 2009 in Italy
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3277)
AUTHORS Medici,M.C., Giammanco,G.M., Tummolo,F. and Martella,V.
TITLE Direct Submission
JOURNAL Submitted (05-DEC-2014) Unit of Microbiology and Virology,
Departement of Clinical and Experimental Medicine, University of
Parma, Viale A. Gramsci, 14, Parma, Parma 43126, Italy
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3277
/organism="Norovirus Hu/GII.4/PR6876/2010/ITA"
/mol_type="genomic RNA"
/isolate="PR6876/2010"
/isolation_source="stool"
/db_xref="taxon:1457684"
/country="Italy"
/collection_date="2010"
/collected_by="MC Medici"
/note="genotype: GII.4 New Orleans 2009"
CDS <1..822
/note="ORF1"
/codon_start=1
/product="RNA-dependent RNA polymerase"
/protein_id="AKE31848.1"
/translation="HYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLS
PSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFS
FYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTR
DPAGWFGKLEQSSILRQMYWTRGPNHGDPSETMIPHSQRPIQLMSLLGEAALHGPAFY
SKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 803..2425
/note="ORF2"
/codon_start=1
/product="major capsid protein"
/protein_id="AKE31849.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHISGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQATRTNGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG
STTPRNEPQQWVLPSYSGRNIHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 2425..3231
/note="ORF3"
/codon_start=1
/product="minor capsid protein"
/protein_id="AKE31850.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKTLDWSGTRYWAPDARTTTYNAGRFSTPQPLGALPGRANLRATVPARGSSSTSS
NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 cactatgatg cagattactc tcgatgggat tcaacacaac agagagccgt gttggcagca
61 gctctggaaa tcatggttaa attctcccca gaaccacatt tggctcaggt agtcgcggaa
121 gaccttcttt ctcctagcgt ggtggacgtg ggcgatttca caatatcaat caacgagggt
181 cttccctctg gggtgccctg cacctcccaa tggaactcca tcgcccactg gcttctcact
241 ctctgtgcgc tctctgaagt cacaaaccta tcccctgata ccatacaggc taactccctc
301 ttctcttttt atggtgatga tgaaattgtt agcacagaca taaaattgga cccagagaaa
361 ttgacagcaa agctcaggga gtatgggcta aaaccaaccc gccctgacaa aactgaagga
421 ccccttgtca tctctgaaga cctgaatggc ctaactttcc tgcggagaac tgtgacccgc
481 gacccagctg gttggtttgg gaaattggag cagagttcaa tactcaggca aatgtattgg
541 actaggggtc ccaaccatgg agacccttct gaaacaatga ttccacactc ccaaagaccc
601 atacaattga tgtccctact gggggaggcc gctctccacg gcccagcatt ttacagtaaa
661 atcagcaaat tggtcattgc agagcttaaa gaaggtggca tggattttta cgtgcccaga
721 caagagccaa tgttcagatg gatgagattc tcagatctga gcacgtggga gggcgatcgc
781 aatctggctc ccagttttgt gaatgaagat ggcgtcgagt gacgccaacc catctgatgg
841 gtccacagcc aacctcgtcc cagaggtcaa caatgaggtt atggctttgg agcccgtagt
901 tggtgccgcc atcgcggcac ctgtagcggg ccaacaaaat gtaattgacc cctggattag
961 aaacaatttt gtacaagccc ctggtggaga gtttacagta tcccctagaa acgctccagg
1021 tgaaatacta tggagcgcgc ccttaggccc tgatttgaat ccctaccttt cccacttggc
1081 cagaatgtac aatggttatg caggtggttt tgaagtgcag gtgatccttg cggggaacgc
1141 gttcaccgcc gggaaaatca tatttgcagc agtcccacca aatttcccaa ctgaaggttt
1201 gagccccagc caggtcacta tgttccccca cataatagta gatgttaggc aattggaacc
1261 tgtgttgatc cccttacccg atgttaggaa taatttctac cattataatc aatcaaatga
1321 ctccaccatc aaattgatag caatgttgta cacaccactt agggctaata atgccgggga
1381 cgatgtcttc acagtttctt gtcgagttct cacgagacca tcccccgatt ttgattttat
1441 atttttggtg ccacccacag ttgaatcaag aactaaacca ttctctgtcc cagttttaac
1501 tgttgaggag atgaccaatt caaggttccc cattcctttg gaaaagttgt tcacgggccc
1561 cagtagtgcc tttgttgttc aaccacaaaa cggcaggtgc acgactgatg gcgtgctcct
1621 aggtactact caactgtctc ctgtcaacat ctgcaccttc agaggggatg tcacccatat
1681 ttcaggcagt cgtaactaca caatgaattt ggcctcccaa aattggaaca gttacgatcc
1741 aacagaagaa atcccagccc ctctaggaac tccagatttc gtggggaaga ttcaaggtgt
1801 gctcacccaa gccacaagga caaatggctc gacccgcggc cacaaagcta cagtgtacac
1861 tgggagcgcc gacttttctc caaaactggg tagagttcaa tttgccactg acacagacaa
1921 tgattttgaa actaaccaaa acacaaaatt caccccagtc ggcgttatcc aggatggtag
1981 tactaccccc cgaaatgaac cccaacaatg ggtgctccca agttactcag gcagaaacat
2041 tcacaatgtg cacctggccc ccgctgtagc ccctactttc ccgggcgagc agctcctctt
2101 cttcagatct actatgcccg gatgcagcgg gtaccccaac atggacttgg actgtctgct
2161 cccccaggaa tgggtgcagt acttctacca ggaggcagcc ccagcacaat ctgatgtggc
2221 tctgttaaga tttgtgaacc cagacacagg tagggttttg tttgagtgta agcttcataa
2281 atcaggctat gttacagtgg ctcatactgg ccaacatgat ttggttatcc cccccaatgg
2341 ttattttaga tttgattcct gggtcaacca gttctacaca cttgccccca tgggaaatgg
2401 gacggggcgt agacgtgcat tataatggct ggagctttct ttgctggatt ggcgtctgac
2461 gtccttggct ctggacttgg ttccctaatc aatgctgggg ctggggccat caaccaaaaa
2521 gttgaatttg aaaataacag gaaattgcaa caagcttcct tccaatttag tagcaatcta
2581 caacaggctt cctttcaaca tgacaaagag atgctccagg cacaaattga ggccaccaaa
2641 aagttgcaac aggaaatgat gagagttaaa caagcaatgc tcctagaggg tggattctct
2701 gagacagatg cagcccgtgg ggcaattaac gcccccatga caaaaacttt ggactggagc
2761 gggacaaggt actgggctcc cgatgctagg actacaacat ataatgcagg ccgcttttcc
2821 accccccaac ccttgggggc actaccagga agagccaatc ttagggctac tgtccccgcc
2881 cggggttcct ccagcacgtc ttctaactct tctattgcta cttctgtgta ttcaaatcaa
2941 accacctcaa cgagacttgg ttctacagct ggttctggta ccagtgtctc gagcctcccg
3001 tcaactgcaa ggactaggag ctgggttgag gatcaaaata ggaatctgtc acctttcatg
3061 aggggggctc acaacatctc gtttgtcacc ccaccatcta gcagatcctc tagtcaaggc
3121 acagtctcaa ccgtgcccaa agaagttttg gactcctgga ctggcgcttt caacacgcgc
3181 aggcagcccc tcttcgctca cattcgcaag cgaggggagt cacgggtgta atgtgaaaag
3241 acaaaattga ttatctttct tttctttagt gtctttt
//