Typing tool
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Typing tool
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Complete norovirus genomes
| KP027330 | GI.6 | |
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| GI.P6 |
ORF1: 1..1388
ORF2: 1372..2994
ORF3: 2994..3013
LOCUS KP027330 3013 bp RNA linear VRL 23-OCT-2016
DEFINITION Norovirus Hu/GI.P6/GI.6/Changhua/14-BC-1/2014/TW non-structural
protein gene, partial cds; major structural protein gene, complete
cds; and minor structural protein gene, partial cds.
ACCESSION KP027330
VERSION KP027330.1
KEYWORDS .
SOURCE Norovirus Hu/GI.P6/GI.6/Changhua/14-BC-1/2014/TW
ORGANISM Norovirus Hu/GI.P6/GI.6/Changhua/14-BC-1/2014/TW
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3013)
AUTHORS Wu,F.-T., Chang,C.-Y., Wu,C.-Y. and Lu,C.-T.
TITLE Norovirus GI.P6/GI.6 gastroenteritis outbreaks
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3013)
AUTHORS Wu,F.-T., Chang,C.-Y., Wu,C.-Y. and Lu,C.-T.
TITLE Direct Submission
JOURNAL Submitted (23-OCT-2014) Centers for Disease Control department of
health Taiwain, R.O.C., Center for Research and Diagnostics, No.
161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..3013
/organism="Norovirus
Hu/GI.P6/GI.6/Changhua/14-BC-1/2014/TW"
/mol_type="genomic RNA"
/isolate="Hu/GI.P6/GI.6/Changhua/14-BC-1/2014/TW"
/isolation_source="stool specimen from a 14-year male with
diarrhea"
/host="Homo sapiens"
/db_xref="taxon:1692156"
/country="Taiwan"
/collection_date="Sep-2014"
CDS <1..1388
/note="ORF1"
/codon_start=3
/product="non-structural protein"
/protein_id="AKU77034.1"
/translation="KDPRVKGGPSLHQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTS
MLEQVMDTPTPWSYADACQSLDKTTSSGHPYHKRKNDDWNGTTFVGELGEQAAHANNM
YEQGKSMKPLYTAALKDELVKPEKIYQKIKKRLLWGADLSTVIRSARAFGPFCDAIKS
HVIKLPIKVGMNSIEDGPLIYAEHAKYKNHFDADYSAWDSTQNRQIMMESFSIMCRLT
ASPDLAAVVARDLLAPSEMDVGDFVIRVKEGLPSGFPCTSQVNSINHWLITLCALSEV
TGLAPDVIQSQSYFSFYGDDEIVSTDIDFDPVRLTQVLREYGLRPTRPDKSEGPIILR
RSVDGLVFLRRTISKDAAGYQGRLDRNSIERQLWWTRGPNHDDPNETLIPHPQRKVQL
ISLLGEASLHGEKFYRKISGRVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRD
LLPEFVNDDGV"
CDS 1372..2994
/note="VP1"
/codon_start=1
/product="major structural protein"
/protein_id="AKU77035.1"
/translation="MMMASKDAPTSPDGASGAGQLVPEVNTADQISMDPVAGASTAVA
TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG
WVGNMRVRILLAGNAFTAGKIIICCVPPGFDARILTIAQATLFPHMIADVRTLEPVEL
PLEDVRNVLYHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF
LFLVPPSVEQKTRVFSVPNIPLKDLSNSRVPTLIQGMFVSPDVNQSVQFQNGRCQIDG
QLQGTTPVSLSQLCKIRGKTSSNARVLNLSEVDGTPFVPLESPAPVGFPDLGGCDWHV
GFTFEARDQDPSQNVTFATNDSSFVPYLGSISPHNGDGFHSGDIIGSLDWISAPSDGS
TLDVWSIPKYGSSLPDVTHLAPAVFPPGFGEVILYFHSKFPGSGPTDKLRVPCLIPQE
FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGYMTCVPNSISSGPQTLPTN
GVFVFVSWVSRFYQLKPVGTASMARRLGLRRI"
CDS 2994..>3013
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="AKU77036.1"
/translation="MAQAIIG"
ORIGIN
1 gcaaagatcc tagagtcaag ggtggtcctt ctttgcacca ggtccttcgg gatcaactga
61 aaccttttgc tgaaccacgt gggcgcatgc cagagccagg tttgctggag gctgctgttg
121 agacagtgac ttctatgctg gaacaggtta tggatacgcc cacaccatgg tcatacgcag
181 atgcctgcca gtcattagac aagaccacca gttctggaca cccctaccac aagaggaaga
241 atgatgattg gaacggcacc actttcgtgg gggagcttgg tgagcaggca gcccatgcaa
301 ataacatgta tgagcaaggc aagtccatga agcccctata cacagcagcc ctcaaagatg
361 aacttgttaa accagagaag atctatcaaa agatcaagaa aaggttgctg tggggagctg
421 acctgtcgac cgttatacgg tccgcgcggg cttttggccc cttctgtgat gcaataaaat
481 cccatgtgat caaattgccc attaaggttg gtatgaactc aattgaggat ggccctctaa
541 tctatgctga acatgcaaaa tataagaatc actttgatgc agattattca gcctgggact
601 caacacaaaa tagacaaatc atgatggagt ccttctcaat catgtgtcgc ctcactgcct
661 caccagattt ggcagctgtt gtggctagag acctgttagc tccttctgag atggatgtgg
721 gagactttgt aattagagtt aaggagggtc tcccatcagg cttcccctgt acttcacaag
781 tcaatagtat aaaccattgg ctcattacat tgtgtgctct gtctgaggtc acgggtctgg
841 cacccgatgt tattcagtca cagtcatatt tctccttcta tggggacgat gaaatcgtgt
901 ccacagacat tgattttgac ccggtccggc tcacccaggt ccttagggag tatgggctgc
961 gtccaactcg tccagacaaa agtgagggcc ccataatttt gaggagaagt gtagatggct
1021 tggtgttcct taggcgtacc atctccaaag acgcagctgg ctaccaaggc cggttggata
1081 ggaattccat agaaagacaa ctgtggtgga cccgtggccc caatcatgat gatccaaatg
1141 agacacttat ccctcacccc caaagaaagg tccagcttat atcactgtta ggagaggcat
1201 cacttcacgg ggaaaagttt tacagaaaga tttcaggtag agtcatccaa gagatcaaaa
1261 caggtggatt ggaaatgtat gtgccaggct ggcaggccat gttccgctgg atgcgttttc
1321 atgaccttgg actttggaca ggagatcgcg atctcctgcc cgaattcgta aatgatgatg
1381 gcgtctaagg acgccccaac atcgcctgat ggcgccagtg gcgctggcca gctagtgccg
1441 gaggttaata cagctgacca aatttcaatg gatcctgttg cgggtgcttc cactgcagtt
1501 gcaaccgctg ggcaagttaa tatgattgat ccatggatat tcaataattt tgtccaggcc
1561 cctcagggtg aatttactat ttccccaaac aatacccccg gtgatatttt gtttgattta
1621 caattgggcc cccatttgaa ccccttctta gctcatttat cacagatgta taatgggtgg
1681 gtcggcaata tgcgggtccg catattgctg gcaggcaatg cttttacagc tggtaagata
1741 atcatatgtt gtgtcccccc cggttttgat gctagaatac ttactattgc tcaagctact
1801 ctatttcctc atatgattgc tgatgttagg actcttgaac cggtagagtt acctctcgag
1861 gacgtgcgaa atgtcctcta ccataacagc agccagccac agccaaccat gcgtctggtg
1921 gctatgctat acaccccact gcgcacaggc ggtgggtctg gaggcactga tgcttttgtg
1981 gttgctggga gagtgctgac atgtcctgcg ccagacttca gttttctatt tcttgttcct
2041 ccctctgtag agcaaaagac tagggtcttc agtgtgccca atataccact caaggatctc
2101 tcaaactctc gagtgccaac cttgatacaa ggtatgtttg tttctcctga tgttaatcaa
2161 tcagtgcaat tccaaaatgg gcggtgccaa attgatggcc agttacaagg taccacccca
2221 gtgtccctca gccaattatg taagatcaga ggtaagactt ccagcaatgc cagagtactc
2281 aaccttagtg aggttgatgg gacacctttt gtgccccttg agtcccctgc acctgtaggt
2341 ttcccagatt taggcgggtg tgattggcat gtcggcttta cttttgaggc acgagaccag
2401 gacccttccc agaatgtgac ctttgcaact aatgattcta gctttgtgcc atatcttggc
2461 agtatctcac cccataatgg tgatgggttt catagtggtg atattatagg tagtttagat
2521 tggatttcag ctccatcgga tggttccaca cttgacgtgt ggtccatacc aaaatatggg
2581 tcatctctcc cagatgtcac tcatctggcc cctgcagttt ttccccctgg ttttggtgag
2641 gtcatcctct actttcactc caaatttcct ggttctggcc ctactgataa actcagggtc
2701 ccatgtctga taccacaaga gttcataaca cacttctgca atgagcaagc acccatagcg
2761 ggggaggctg ccctccttca ctatgtggac cctgacacag gtaggaactt gggggaattc
2821 aagctttatc cagatggcta tatgacatgt gtgcctaaca gcatcagcag tggcccccag
2881 actctgccaa ctaacggtgt gtttgtgttt gtgtcctggg tgtccagatt ttaccaactt
2941 aagcctgtgg gaacggcctc aatggccagg aggcttggtc ttcggcgcat ataatggctc
3001 aagccatcat agg
//