Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| KM386681 | GII.5 | |
|
|---|---|---|---|
| GII.P40 |
ORF1: 1..1671
ORF2: 1658..3274
ORF3: 3274..3995
LOCUS KM386681 3995 bp RNA linear VRL 01-SEP-2015
DEFINITION Norovirus 11-FM-1/2011/GII.P22/GII.5 nonstructural protein gene,
partial cds; major capsid protein gene, complete cds; and minor
structural protein gene, partial cds.
ACCESSION KM386681
VERSION KM386681.1
KEYWORDS .
SOURCE Norovirus 11-FM-1/2011/GII.P22/GII.5
ORGANISM Norovirus 11-FM-1/2011/GII.P22/GII.5
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3995)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Norovirus GII.P22/GII.5 gastroenteritis outbreaks
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3995)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Direct Submission
JOURNAL Submitted (21-AUG-2014) Centers for Disease Control department of
health Taiwain, R.O.C., Center for Research and Diagnostics, No.
161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..3995
/organism="Norovirus 11-FM-1/2011/GII.P22/GII.5"
/mol_type="genomic RNA"
/isolate="11-FM-1/2011/GII.P22/GII.5"
/isolation_source="stool specimen from a 10-year male with
diarrhea"
/host="Homo sapiens"
/db_xref="taxon:1631321"
/country="Taiwan"
/collection_date="Dec-2011"
CDS <1..1671
/note="ORF1"
/codon_start=1
/product="nonstructural protein"
/protein_id="AJX18192.1"
/translation="PGDCGCPYVYKRGNDWVVIGVHTAAARGGNTVICATQGPDGEAT
LEGRDNHGTYCGAPILGPGSAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGG
PSLQQVMREQLKPFTAPRGKPPRPAILEAAKETICNVLEQIIDPPQKWSYAQACASLD
KTTSSGHPHHMKKNDNWNGESFTGVLADQASKANLMFEQGKHMQPVYTAALKDELVKT
SKIYEKIKKRLLWGSDLGTMIRCARAFGGLMDEMKANCVNLPIRVGMNMNEDGPIIFE
KHSKYKYHYDADYSRWDSTQQRHILGAALEIMVRFSAEPELAQIVSEDLLAPSVVDVG
DFKITINEGLPSGVPCTSQWNSISHWLITLCAISEISGLSPDVVQTNSCFSFYGDDEI
VSTDIKLDPMKLTNKLKEYGLIPTRPDKTEGPLIIKENLDGLTFLRRDVCRDPAGWYG
KLDQSSIMRQLFWTKGPNHDDPNETMIPHSQRPIQLMSLLGEAALHGPVFYKKVSKLV
ITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
CDS 1658..3274
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AJX18193.1"
/translation="MASNDATPSNDGAAGLVPESNNEAMALEPVVGASLAAPVTGQTN
IIDPWIRTNFVQAPNGEFTVSPRNSPGEILVNLELGPELNPYLAHLARMYNGYAGGME
VQVMLAGNAFTAGKIIFAAVPPYFPVENLSPSQITMFPHVIIDVRTLEPVLLPMPDVR
STLFHFNQKDEPKMRLVAMLYTPLRSNGSGDDVFTVSCRILTRPSPEFDFTYLVPPTV
ESKTKPFTLPVLTLGELSNSRFPLSIDEMVTSPNESIVVQPQNGRVTLDGELLGTTQL
QACNICSIRGKVTGQVPNEQHMWNLEITNLNGTQFDPTDDVPAPLGVPDFAGEVFGVL
SQRNRGESNPANRAHDAVVATYSDKYTPKLGLVQIGTWNTNDVENQPTKFTPIGLNEV
ANGHRFEQWTLPRYSGALTLNMNLAPAVAPLFPGERLLFFRSYVPLKGGFGNPAIDCL
VPQEWVQHFYQESAPSLGDVALVRYVNPDTGRVLFEAKLHKGGFLTVSSTSTGPVVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRFQ"
CDS 3274..>3995
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="AJX18194.1"
/translation="MAGAFIAGLAGDVLSNGLGSLINAGANAINQRAEFDFNRQLQQN
SFNHDKEMLNAQIQATKQLQADMIAIKQGVLAAGGFSPTDAARGAVNAPMTQALDWSG
TRYWAPGSMKTTSYSGKFVSMNPVRQVEFPQPKKSAAIPSSASSVSSGRTNFTNSTQS
TVVSTSSVSPSRGSSAPSTLSRATTRTSNWVEEQNRNLEPYMRGALQTTFVTPPSSRA
SSNGTVSTVPKGVLDSWTPAFN"
ORIGIN
1 cctggagact gtggttgtcc ctatgtttac aagagaggta atgactgggt ggttataggg
61 gtgcacaccg cagccgccag aggtggcaac actgtgattt gtgccactca gggtccagac
121 ggtgaggcca cgcttgaggg gagagacaac cacgggactt actgtggggc accaatactt
181 ggaccaggaa gtgcaccaaa actcagcact aagactaaat tctggaggtc atccaacgcc
241 ccactcccgc ctggcactta tgagcccgct tacctaggcg gaaaagaccc aagagtcaag
301 gggggaccat cactacagca agtcatgagg gaacaactca aacctttcac agccccccga
361 gggaagcccc cacgaccggc gatcctggag gctgctaagg aaaccatctg taatgtactt
421 gagcagatca ttgacccacc ccaaaaatgg tcttatgctc aggcctgtgc ctctctggac
481 aaaacaacat ccagtggcca tccccaccat atgaaaaaga atgacaactg gaacggagag
541 tccttcaccg gtgtgttggc tgaccaagct tccaaggcaa atctcatgtt tgaacaaggg
601 aaacacatgc aacctgtgta cactgccgcc ctcaaagacg agctcgtcaa gactagcaag
661 atctatgaga aaattaagaa gaggctccta tggggttcag atctgggcac aatgatccgc
721 tgtgctaggg cttttggagg cctcatggat gagatgaaag caaattgtgt aaacttacca
781 atcagagttg gcatgaacat gaatgaagat ggacccatca ttttcgagaa acattcaaag
841 tataagtacc attatgatgc tgactactct aggtgggatt caacccaaca gagacatatc
901 ttgggggctg cccttgagat aatggttagg ttctcagctg aacctgaatt ggcccaaatt
961 gtatctgaag atctcctagc ccccagcgtg gtggacgttg gtgacttcaa gatcaccata
1021 aatgaaggtt taccctctgg agtgccgtgc acatcacaat ggaactcaat ttcccactgg
1081 ctaataacac tatgtgccat atcagaaatt tcagggctgt cgccagatgt ggtacaaaca
1141 aactcctgtt tctccttcta tggggatgat gagatagtca gcactgacat taagttagat
1201 cccatgaaat taactaacaa gttgaaggag tatggactga tcccaacaag accagacaag
1261 acagaggggc cactcataat caaagagaac cttgatggct tgacctttct gaggagggat
1321 gtgtgtcggg acccagctgg ttggtatgga aaacttgatc aatcctcaat tatgagacaa
1381 ttgttttgga ccaaggggcc caaccatgac gatcccaatg agacaatgat tccacactcc
1441 cagaggccca tacaactaat gtcattgctg ggggaggcag cattacacgg accagttttc
1501 tacaagaaag tcagtaaatt agttatcact gagctcaaag agggtggaat ggatttttac
1561 gtgccaaggc aagaacctat gtttaggtgg atgagattct ctgacctcag cacttgggag
1621 ggcgatcgca atcttgctcc cgaaggtgtg aatgaagatg gcgtcgaatg acgctactcc
1681 atcaaatgat ggtgctgccg gcctcgtgcc agaaagtaac aatgaggcaa tggctctgga
1741 acccgtggtg ggggcgtctt tagccgcccc tgtcactggc caaactaata taatagaccc
1801 ctggattaga actaattttg tccaagcccc taatggtgaa ttcacagttt cccctagaaa
1861 ttcccctgga gagatattgg tcaatttgga gttaggtcca gaactgaacc cttatctggc
1921 acatttagct aggatgtaca atggttatgc gggtggtatg gaggtgcaag tgatgctcgc
1981 ggggaacgcg ttcactgctg gcaagatcat ctttgccgcc gtgccacctt actttccagt
2041 ggaaaatctt agcccttccc aaataacaat gttcccacat gtgattatcg atgttagaac
2101 cttagaacct gtactgctcc caatgcctga tgtcagaagc acccttttcc actttaatca
2161 aaaggatgaa cctaagatga gacttgttgc catgctctac acccctcttc gttctaatgg
2221 ctctggtgat gacgttttca ctgtctcatg taggatcctc actaggccct ctcctgaatt
2281 tgatttcaca tacttggtgc caccaacagt ggagtcaaag accaagccat tcacactacc
2341 tgtgctgaca ttgggagaat tgtccaattc tagattccct ctctctattg atgaaatggt
2401 caccagccct aatgagtcca tagttgttca gccacagaat ggtagggtca cactagatgg
2461 ggagttgtta ggcacaaccc aactgcaagc atgtaacatt tgttccataa gggggaaagt
2521 gacaggacag gtccctaatg aacaacacat gtggaacctg gagattacaa acctaaatgg
2581 gacgcaattt gaccctacag atgatgtccc agcccctctt ggtgtgcccg actttgcagg
2641 tgaggtcttt ggtgtactca gccagagaaa tagaggtgaa agcaatccag caaacagggc
2701 tcatgatgct gttgtggcta cctacagtga taaatacacc cctaaattgg gcttagtgca
2761 aattgggact tggaacacca acgatgttga aaaccagcca acaaaattca ccccaattgg
2821 tttgaatgag gtcgccaatg gccatcgatt tgaacagtgg accttgccta ggtattctgg
2881 tgccctgaca ctaaatatga atttagctcc tgctgtggcc ccgctctttc ctggagagcg
2941 tctccttttc ttccgctctt acgtcccatt aaaaggtgga tttggaaacc ctgctataga
3001 ttgtctagtg cctcaggagt gggtccaaca tttctatcag gaatctgccc catctctggg
3061 ggatgtggcc ttagtcaggt acgtcaaccc agacaccggg cgcgtccttt ttgaggccaa
3121 actccacaaa ggtgggttcc tgaccgtgtc aagcactagc acagggcctg ttgtggtccc
3181 agccaatggt tatttcagat ttgattcttg ggttaatcaa ttttactctc ttgcccccat
3241 gggaactggg aatgggcgca gaaggtttca gtaatggcag gagctttcat agcaggttta
3301 gcaggtgatg tgcttagtaa tggcctcggt tcgctgatta atgccggagc caatgctatc
3361 aatcaaagag cagaatttga tttcaatagg caattgcagc aaaattcttt taatcatgat
3421 aaggagatgt taaatgccca aattcaagca acaaaacagt tgcaggctga tatgatagca
3481 atcaaacagg gagtcctagc tgctgggggt ttctcaccaa ctgatgcagc cagaggagct
3541 gtcaatgcac ccatgaccca agcattagat tggagtggca ctaggtattg ggcccctggt
3601 tcaatgaaga ccaccagcta ttctggaaag tttgtgtcca tgaatcctgt taggcaggtt
3661 gagttcccgc agcccaaaaa gagtgcggcc ataccatcaa gtgccagctc tgtgtcttct
3721 ggtaggacta atttcacaaa ttctactcaa tcaactgttg ttagcacttc ctcagtatca
3781 ccttctaggg gttcttctgc tccttctact ctatcaaggg ctacaaccag aacttccaat
3841 tgggttgagg aacaaaacag gaatttggaa ccctacatga ggggtgccct ccaaacaaca
3901 tttgtcaccc ccccttccag ccgggcatct agcaacggta cagtctcaac tgtaccaaaa
3961 ggtgttttgg actcctggac acctgcgttt aacaa
//