Typing tool
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Typing tool
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Complete norovirus genomes
| KM386680 | GII.5 | |
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| GII.P40 |
ORF1: 1..1650
ORF2: 1637..3253
ORF3: 3253..3898
LOCUS KM386680 3898 bp RNA linear VRL 01-SEP-2015
DEFINITION Norovirus 07-AF-1/2007/GII.P22/GII.5 nonstructural protein gene,
partial cds; major capsid protein gene, complete cds; and minor
structural protein gene, partial cds.
ACCESSION KM386680
VERSION KM386680.1
KEYWORDS .
SOURCE Norovirus 07-AF-1/2007/GII.P22/GII.5
ORGANISM Norovirus 07-AF-1/2007/GII.P22/GII.5
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3898)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Norovirus GII.P22/GII.5 gastroenteritis outbreaks
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3898)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Direct Submission
JOURNAL Submitted (21-AUG-2014) Centers for Disease Control department of
health Taiwain, R.O.C., Center for Research and Diagnostics, No.
161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..3898
/organism="Norovirus 07-AF-1/2007/GII.P22/GII.5"
/mol_type="genomic RNA"
/isolate="07-AF-1/2007/GII.P22/GII.5"
/isolation_source="stool specimen from a 18-year male with
diarrhea"
/host="Homo sapiens"
/db_xref="taxon:1631309"
/country="Taiwan"
/collection_date="Jun-2007"
CDS <1..1650
/note="ORF1"
/codon_start=1
/product="nonstructural protein"
/protein_id="AJX18189.1"
/translation="YVYKRGNDWVVIGVHTAAARGGNTVICATQGPDGEATLEGRDNH
GTYCGAPILGPGSAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVM
REQLKPFTAPRGKPPRPAILEAAKETICNVLEQIIDPPQKWSYAQACASLDKTTSSGH
PHHMKKNDNWNGESFTGVLADQASKANLMFEQGKHMQPVYTAALKDELVKTSKIYEKI
KKRLLWGSDLGTMIRCARAFGGLMDEMKANCVNLPIRVGMNMNEDGPIIFEKHSKYKY
HYDADYSRWDSTQQRHILGAALEIMVRFSAEPELAQIVSEDLLAPSVVDVGDFKITIN
EGLPSGVPCTSQWNSISHWLITLCAISEISGLSPDVVQTNSCFSFYGDDEIVSTDIKL
DPMKLTNKLKEYGLIPTRPDKTEGPLIVKENLDGLTFLRRDVCRDPAGWYGKLDQSSI
MRQLFWTKGPNHDDPNETMIPHSQRPIQLMSLLGEAALHGPVFYKKVSKLVITELKEG
GMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
CDS 1637..3253
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AJX18190.1"
/translation="MASNDATPSNDGAAGLVPESNNEAMALEPVVGASLAAPVTGQTN
IIDPWIRTNFVQAPNGEFTVSPRNSPGEILVNLELGPELNPYLAHLARMYNGYAGGME
VQVMLAGNAFTAGKIIFAAVPPYFPVENLSPPQITMFPHVIIDVRTLEPVLLPMPDVR
STLFHFNQKDEPKMRLVAMLYTPLRSNGSGDDVFTVSCRILTRPSPEFDFTYLVPPTV
ESKTKPFTLPVLTLGELSNSRFPLSIDEMVTSPNESIVVQPQNGRVTLDGELLGTTQL
QACNICSIRGKVTGQVPNEQHMWNLEITNLNGTQFDPTDDVPAPLGVPDFAGEVFGVL
SQRNRGESNPANRAHDAVVATYSDKYTPKLGLVQIGTWNTNDVENQPTKFTPIGLNEV
ANGHRFEQWTLPRYSGALTLNMNLAPAVAPLFPGERLLFFRSYVPLKGGFGNPAIDCL
VPQEWVQHFYQESAPSLGDVALVRYVNPDTGRVLFEAKLHKGGFLTVSSTSTGPVVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRFQ"
CDS 3253..>3898
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="AJX18191.1"
/translation="MAGAFIAGLAGDVLSNGLGSLINAGANAINQRAEFDFNRQLQQN
SFNHDKEMLNAQIQATKQLQADMIAIKQGVLAAGGFSPTDAARGAVNAPMTQALDWSG
TRYWAPGSMKTTSYSGKFVSMNPVRQVEFPQPKKSAAIPSGASSVSSGRTNFTNSTQS
TVVSTSSVPPSRGSSAPSTLSRATTRTSNWVEEQNRNLEPYMRGALQTTFVTPPS"
ORIGIN
1 tatgtttaca agagaggtaa tgattgggtg gtcatagggg tgcacaccgc agccgccaga
61 ggtggcaaca ctgtgatttg tgccactcag gggccagacg gtgaggccac gcttgagggg
121 agagacaacc acgggactta ctgtggggca ccaatacttg gaccaggaag tgcaccaaaa
181 ctcagcacta aaactaagtt ctggaggtca tccaacgccc cactcccgcc tggcacttat
241 gagcccgctt acctaggcgg aaaagaccca agagtcaagg ggggaccatc actacagcaa
301 gtcatgaggg aacaactcaa acctttcaca gccccccgag ggaagccacc acgaccggcg
361 atcctggagg ctgctaagga aaccatctgt aatgtacttg agcagatcat tgacccaccc
421 caaaaatggt cttatgccca ggcctgtgcc tctctggaca aaacaacatc cagtggccat
481 ccccaccata tgaaaaagaa tgacaactgg aacggagagt ccttcactgg tgtgttagct
541 gaccaagctt ccaaggcaaa tctcatgttt gaacaaggga aacacatgca acctgtgtac
601 actgccgccc tcaaagacga gctcgtcaag actagcaaga tctatgagaa aattaagaag
661 aggctcctat ggggttcaga tctgggcaca atgatccgct gtgctagggc ttttggaggc
721 ctcatggatg agatgaaagc aaattgtgta aatttaccaa tcagagttgg catgaacatg
781 aatgaagatg gacccatcat tttcgagaaa cattcaaagt ataagtacca ttatgatgct
841 gactactcta ggtgggactc aacccaacag agacatatct tgggggctgc ccttgaaata
901 atggttaggt tctcagctga acctgaattg gcccaaattg tatctgaaga tctcctagcc
961 cccagcgtgg tggacgttgg cgacttcaag atcaccataa atgaaggttt accctctgga
1021 gtgccgtgca catcacaatg gaactcaatt tcccactggc taataacact atgtgccata
1081 tcagaaattt cagggctgtc gccagatgtg gtacaaacaa actcctgttt ctccttctat
1141 ggggatgatg agatagtcag cactgacatt aagttagatc ccatgaaatt aactaacaag
1201 ttgaaggagt atggactgat cccaacaaga ccagacaaga cagaggggcc actcatagtc
1261 aaagagaacc ttgatggctt gaccttcctg aggagggatg tgtgtcggga cccagctggt
1321 tggtatggaa aacttgatca atcctcaatt atgagacaat tgttttggac caaggggccc
1381 aaccatgacg atcccaatga gacaatgatt ccacactctc agaggcccat acaactaatg
1441 tcattgctgg gggaggcagc attacacgga ccagttttct acaagaaagt cagtaaatta
1501 gttatcactg agctcaaaga gggtggaatg gatttttacg tgccaaggca ggaacctatg
1561 tttaggtgga tgagattctc tgacctcagc acttgggagg gcgatcgcaa tcttgctccc
1621 gaaggtgtga atgaagatgg cgtcgaatga cgctactcca tcaaatgatg gtgctgccgg
1681 cctcgtgcca gaaagtaaca atgaggcaat ggctctggaa cccgtggtgg gggcgtcttt
1741 agccgcccct gtcactggcc aaactaatat aatagacccc tggattagaa ctaattttgt
1801 ccaagccccc aatggtgaat tcacagtttc ccctagaaat tcccctggag agatattggt
1861 caatttggag ttaggtccag aactgaaccc ttatctggca catttagcta ggatgtacaa
1921 tggttatgcg ggtggtatgg aggtgcaagt gatgctcgcg gggaacgcgt tcactgctgg
1981 caagatcatc tttgccgccg tgccacctta ctttccagtg gaaaatctta gccctcccca
2041 aataacaatg ttcccacatg tgattatcga tgttagaacc ttagaacctg tactgctccc
2101 aatgcctgat gtcagaagca cccttttcca ctttaatcaa aaggatgaac ctaagatgag
2161 acttgttgcc atgctttaca cccctcttcg ttctaatggc tctggtgatg acgttttcac
2221 tgtctcatgt aggatcctca ctaggccctc ccctgaattt gatttcacat acttggtgcc
2281 accaacagtg gagtcaaaga ccaagccatt cacactacct gtgctgacac tgggagaatt
2341 gtccaattct agattccctc tctctattga tgaaatggtc accagcccta atgagtccat
2401 agttgttcag ccacagaatg gtagggtcac actagatggg gagttgttag gcacgaccca
2461 actgcaagca tgtaacattt gttccataag ggggaaagtg acaggacagg tccctaatga
2521 acaacacatg tggaacctgg agattacaaa cctaaatggg acgcaatttg accctacaga
2581 tgatgtccca gcccctcttg gtgtgcccga ctttgcaggt gaggtctttg gtgtactcag
2641 ccagagaaat agaggtgaaa gcaatccagc aaacagggct catgatgctg tcgtggctac
2701 ctacagtgat aaatacaccc ctaaattggg cttagtgcaa attgggactt ggaacaccaa
2761 cgatgttgaa aaccagccaa caaaattcac cccaattggt ttgaatgagg tcgccaatgg
2821 ccatcgattt gaacagtgga ctttgcctag gtattctggc gccctgacat taaatatgaa
2881 tttagctcct gctgtggccc cgctctttcc tggagagcgt ctccttttct tccgctctta
2941 cgtcccatta aaaggtggat ttggaaaccc tgctatagat tgtctagtgc ctcaggagtg
3001 ggtccaacat ttctatcagg aatctgcccc atctctgggg gatgtggcct tagtcaggta
3061 cgtcaaccca gacaccgggc gcgtcctttt tgaggccaaa ctccacaaag gtgggttcct
3121 gaccgtgtca agcactagca cagggcctgt cgtggtccca gccaatggct atttcagatt
3181 tgattcttgg gttaatcaat tttactctct tgcccccatg ggaactggga atgggcgcag
3241 aaggtttcag taatggcagg agctttcata gcaggtttag caggtgatgt gcttagtaat
3301 ggcctcggtt cgctgattaa tgccggagcc aatgccatca atcaaagagc agaatttgat
3361 tttaataggc aattgcagca aaattctttt aatcatgata aggagatgtt aaatgcccaa
3421 attcaagcaa caaaacagtt gcaggctgat atgatagcaa tcaaacaggg agtcctagct
3481 gctgggggtt tctcaccaac tgatgcagcc agaggagctg tcaatgcacc catgacccaa
3541 gcactagatt ggagtggcac taggtattgg gcccctggtt caatgaagac caccagctat
3601 tctggaaagt ttgtgtccat gaatcctgtt aggcaggttg agttcccgca gcccaaaaag
3661 agtgcggcca taccatcagg tgccagctct gtgtcttctg gtaggaccaa tttcacaaat
3721 tctactcaat caactgttgt tagcacttcc tcagtgccac cttctagggg ttcttctgct
3781 ccttctactc tatcaagggc tacaactaga acttccaatt gggttgagga acaaaacagg
3841 aatttggaac cctacatgag gggtgccctc caaacaacat ttgtcacccc cccttcca
//