Typing tool
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Typing tool
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Complete norovirus genomes
| KM267743 | GII.6 | |
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| GII.P7 |
ORF1: 1..1670
ORF2: 1651..3300
ORF3: 3300..3328
LOCUS KM267743 3328 bp RNA linear VRL 05-AUG-2015
DEFINITION Norovirus GII isolate Hu/GII.P7/GII.6/Kaohsiung/13-BV-1/2013/TW
nonstructural protein gene, partial cds; major capsid protein gene,
complete cds; and minor structural protein gene, partial cds.
ACCESSION KM267743
VERSION KM267743.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3328)
AUTHORS Wu,F.-T., Chang,C.-Y., Chen,H.-C., Lu,C.-T. and Wu,C.-Y.
TITLE Norovirus GII.P7/GII.6 gastroenteritis outbreaks
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3328)
AUTHORS Wu,F.-T., Chang,C.-Y., Chen,H.-C., Lu,C.-T. and Wu,C.-Y.
TITLE Direct Submission
JOURNAL Submitted (05-AUG-2014) Centers for Disease Control Department of
Health, Center for Research and Diagnostics, No. 161, Kun-Yang
Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..3328
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.P7/GII.6/Kaohsiung/13-BV-1/2013/TW"
/isolation_source="stool"
/host="Homo sapiens; 7 year old male with diarrhea"
/db_xref="taxon:122929"
/country="Taiwan"
/collection_date="Dec-2013"
CDS <1..1670
/note="ORF1"
/codon_start=3
/product="nonstructural protein"
/protein_id="AKF42436.1"
/translation="GDCGCPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVL
EGNENLGTYCGAPILGPGKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGP
SLQQVMRDQLKPFTEPRGKPPRPAILEEAKKTVMNVLEQTIDPAKPWTYSQACASLDK
TTSSGSPHHVKKNDHWNGESFTGLLADQASKANLMYEQAKHVQPVYTAALKDELVKTD
KIYKKIKKRLLWGSDLGTMIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDK
HSKYRYHYDADYSRWDSTQQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGD
FVISVQEGLPSGVPCTSQWNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIV
STDINLDPMKLTQKLREYGLAPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGK
LDQDSILRQLYWTRGPNHENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVI
NEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPEGVNEDGVD"
CDS 1651..3300
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AKF42437.1"
/translation="MKMASTDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVKNISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQEDTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEGVVVQPQNGRCTLDGTLQGTTQ
LVPTQICAFRGKLIGQTSRSPDSDSTDSAPRRRDHPLHVQLENLDGTQYDPTDEVPAT
LGAVDFKGTIFGVASQRDTSGSQVGATRAHEVHINTTDPRYTPKLGSILMYSESLDFE
TGQPVRFTPIGMGENDWHQWELPDYSGRLTLNMNLAPAVAPAFPGERILFFRSIVPSA
GGYGSGQIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITV
ANSGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRNQ"
CDS 3300..>3328
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="AKF42438.1"
/translation="MAGAFLAGLA"
ORIGIN
1 ctggtgactg cggttgccct tacatctaca aacgcggcaa tgacatagtt gtcgcgggtg
61 tccacaccgc agcagcccgg ggaggcaata ccgtcatatg tgccactcaa gggcaagatg
121 gggaggcagt tcttgaggga aatgagaacc ttggcactta ctgcggtgcc ccaattttgg
181 gtccgggcaa ggcgcccaaa ctcagcacga agaccaaatt ctggcgttca tcaccagacg
241 ctttgccgcc aggcacttat gagcctgcct acctaggagg caaggacccc agagtggaga
301 aaggaccatc cctgcagcaa gtcatgaggg atcagttaaa acctttcaca gaacccagag
361 gtaaaccacc tagacctgca atcttagaag aagccaaaaa gacagtgatg aatgttctag
421 aacaaaccat cgaccctgcc aagccatgga cctattccca agcatgtgcc tcactggaca
481 agaccacttc tagtggtagc ccccaccatg tcaagaaaaa tgaccattgg aatggagaat
541 ccttcaccgg cctccttgca gaccaagcat ccaaagccaa tctcatgtat gagcaggcca
601 aacatgtgca gcccgtgtac acagccgctc tcaaagatga gcttgtcaag actgacaaga
661 tctacaaaaa gataaagaag aggctcttat gggggtcgga tcttggcacg atgatcaggt
721 gcgccagggc ctttggcggt ctcatggata gcatgaaggc aagctgtata gccctcccat
781 gcagggtagg aatgaacatg aacgaagatg gtcccatcat atttgacaaa cactctaagt
841 acaggtatca ctatgatgct gactattcca ggtgggattc aacccagcaa aggagcattc
901 tctcggccgc tatggaagtg atggtgcggt tttctgccga accagagctg gcacaagtgg
961 tcgcagagga ccttctggca cccagccaac tagatgttgg cgattttgtc atctcagtcc
1021 aggagggtct gccatcaggg gtcccatgca catcacagtg gaattcaata gcacattgga
1081 tcctaaccct gagtgcaatg gcagaagtat caggtctctc accagatgtt gttcaagccc
1141 actcctgttt ctcattttac ggcgacgatg agatcgtcag cactgacata aaccttgacc
1201 ccatgaagtt gacacagaaa ctcagggaat atggtctggc ccccacccgg cctgataaaa
1261 ctgaaggtcc cctcgtaata actgaagacc tcaccggcct aacgttcctt cgtaggtcga
1321 ttgcacgaga cccagctggg tggtttggaa aattggacca ggactcaatc ctcaggcagt
1381 tatactggac aagaggcccc aatcatgaga atccatatga gagcatggtc cctcactccc
1441 aacgggccac acaactcatg gcccttctcg gtgaggcctc actgcatggc ccccagttct
1501 acaagaaagt tagcaagatg gtcatcaatg aaatcaaaag tggtggtctg gaattttatg
1561 tgcccagaca agaggccatg ttcaggtgga tgagattctc tgacctcagc acatgggagg
1621 gcgatcgcaa tcttgctccc gagggtgtga atgaagatgg cgtcgactga cgctgctcca
1681 tcgaatgatg gtgctgccaa cctcgtacca gaggccaaca atgaggttat ggcacttgaa
1741 ccggtggtgg gagcctcaat cgcggctcct gtcgtcggcc aacaaaacat aattgacccc
1801 tggattagag aaaattttgt ccaagcacca cagggcgagt tcaccgtctc accgagaaac
1861 tcgcctggtg agatgctatt aaatcttgaa ttaggcccag aacttaaccc ttacctaagc
1921 catttgtccc gcatgtataa cgggtatgct ggtggcatgc aggttcaggt ggtcctggct
1981 gggaatgcgt tcacagctgg gaaaatcatc tttgccgccg tgccaccaca ttttcccgta
2041 aaaaacatca gtgcagccca aataactatg tgcccccatg taattgttga tgtgagacaa
2101 cttgaaccag tacttttgcc cctccctgac ataaggaaca ggttctttca ttacaatcag
2161 gaggataccc cccggatgag gcttgtggca atgctttata ctcccctgag ggccaattct
2221 ggtgaagatg tgtttactgt ctcttgtagg gttttaaccc gtcctgcccc tgattttgaa
2281 ttcactttct tggtgccacc aaccgttgaa tcaaagacta aaccttttac actacccata
2341 ttaactcttg gtgagctatc caactctaga ttcccagccc cgatagacat gttgtacact
2401 gacccaaatg agggggttgt ggtccaacca caaaatggta ggtgcactct tgatggcact
2461 ctgcaaggca ccacacaact ggtccccacc caaatttgtg ctttcagggg caaactaatt
2521 ggccagacat caaggtctcc agactcagac tcaactgact cagcccctcg gagaagggat
2581 cacccactcc atgtgcaatt agagaatctt gatggcacgc agtacgaccc aactgatgaa
2641 gtgccagcaa cccttggtgc cgttgacttc aaggggacca tttttggagt ggccagtcag
2701 agagacacgt cagggagtca agtgggggca acccgagctc atgaggtgca cattaacacg
2761 accgatccca ggtatacacc aaaactggga tccatcctca tgtactcaga gtcgctagac
2821 tttgagactg gacagccggt ccgcttcaca cccataggaa tgggtgagaa cgattggcac
2881 cagtgggagc tgcctgacta ctctggacgc ctgaccctga acatgaacct tgccccagct
2941 gttgctcctg cttttcccgg tgagaggatt cttttcttca ggtcaatagt cccatctgct
3001 ggtggctatg ggtctggaca gatagactgc ctcataccac aggagtgggt tcagcatttc
3061 taccaggaag ctgcaccgtc ccaatctgcc gtggcactca tcaggtatgt caatcctgac
3121 acaggcagaa acatctttga ggctaaactg cacagggaag gtttcatcac cgtggcaaat
3181 tctggtaaca accccattgt tgtcccccct aatgggtatt ttaggtttga agcttgggtg
3241 aaccaatttt acactttgac ccccatggga actggtcagg ggcgcaggag gaatcaataa
3301 tggctggggc ttttcttgca ggtcttgc
//