Typing tool
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Typing tool
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Complete norovirus genomes
| KM267742 | GII.6 | |
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| GII.P7 |
ORF1: 1..1629
ORF2: 1610..3253
ORF3: 3253..4029
LOCUS KM267742 4046 bp RNA linear VRL 05-AUG-2015
DEFINITION Norovirus GII isolate Hu/GII.P7/GII.6/Kaohsiung/13-BJ-3/2013/TW
nonstructural protein gene, partial cds; and major capsid protein
and minor structural protein genes, complete cds.
ACCESSION KM267742
VERSION KM267742.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 4046)
AUTHORS Wu,F.-T., Chang,C.-Y., Chen,H.-C., Lu,C.-T. and Wu,C.-Y.
TITLE Norovirus GII.P7/GII.6 gastroenteritis outbreaks
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4046)
AUTHORS Wu,F.-T., Chang,C.-Y., Chen,H.-C., Lu,C.-T. and Wu,C.-Y.
TITLE Direct Submission
JOURNAL Submitted (05-AUG-2014) Centers for Disease Control Department of
Health, Center for Research and Diagnostics, No. 161, Kun-Yang
Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..4046
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.P7/GII.6/Kaohsiung/13-BJ-3/2013/TW"
/isolation_source="stool"
/host="Homo sapiens; 8 year old female with diarrhea"
/db_xref="taxon:122929"
/country="Taiwan"
/collection_date="Nov-2013"
CDS <1..1629
/note="ORF1"
/codon_start=1
/product="nonstructural protein"
/protein_id="AKF42433.1"
/translation="DIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAP
ILGPGKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPF
TEPRGKPPRPVVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKN
DHWNGESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWG
SDLGTMIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYS
RWDSTQQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGV
PCTSQWNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQ
KLREYGLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWT
RGPNHENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVP
RQEAMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
CDS 1610..3253
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AKF42434.1"
/translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRNTTGNSIGATRAHEVHIDTTNPRYTPKLGSVLMYSESSDFDDG
QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ"
CDS 3253..4029
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="AKF42435.1"
/translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTLPRSEPPKIKVNSDSASVYSSASTAPSQST
HSTALTAGSRSSRTTSSSAVASTLSRTSEWVRGQNERLSPFMDGALQTTFVTPPSSKA
SSYGSVSTVPKAVLDSWTPMFNTHRQPLFAHVRRRGESQI"
ORIGIN
1 gatatagttg tcgcgggtgt ccacaccgca gcggcccggg gaggcaacac tgtcatatgt
61 gccactcaag ggcaagatgg ggaagcagtc cttgagggaa atgagaacct tggcacttac
121 tgcggtgctc caatcttggg cccaggcaag gcgcccaaac ttagcacgaa gaccaagttc
181 tggcgttcat caccagacgc tttgccgcca ggcacttatg agcctgccta cttgggaggt
241 aaggacccta gagtggaaaa aggaccatcc ctgcagcaag tcatgaggga ccagctaaaa
301 cctttcacag aacccagggg caagccacct agacctgtag tcttagaaga agccaaaaag
361 acagtgatga atgttctaga gcaaaccatt gaccctgcta aaccgtggac ctattcccaa
421 gcatgtgcct cactggacaa gaccacttcc agtggtagcc cccatcatgt caggaaaaat
481 gaccattgga atggggaatc cttcactggc cccctcgcag accaagcatc caaagccaac
541 ctcatgtacg agcaggccaa acatgtgcag cccgtgtaca cggccgcact taaagatgaa
601 ctagtcaaaa ctgataagat ctacaagaag ataaagaaaa ggctcttatg ggggtcggat
661 cttggtacaa tgatcaggtg cgccagggcc tttggcggtc tcatggatag catgaaggca
721 agctgcatag ccctcccatg tagggtagga atgaacatga atgaggatgg ccccatcata
781 tttgataaac attctaagta taggtaccat tatgatgctg actattccag gtgggactca
841 acccagcaaa ggagcattct ctcggccgct atggaagtga tggtgcggtt ctctgctgaa
901 ccagagctgg cacaagtggt tgcagaggac ctcctggcac ccagccaact agacgttggc
961 gatttcgtca tctcagtcca ggagggtctg ccatcagggg tcccatgcac atcacaatgg
1021 aattcaatag cacactggat cctaaccttg agtgcaatgg cagaagtatc gggtctctca
1081 ccagatgttg ttcaagccca ctcctgtttc tcattctacg gtgatgatga gatcgtcagc
1141 actgacatca accttgatcc catgaagttg acacagaagc tcagagagta tggcctggtc
1201 cccacccgac ctgacaaaac tgagggtccc ctcgtaataa ctgaagatct caccggccta
1261 acgttcctgc gtaggtcaat tgcacgggac ccagctgggt ggtttggaaa attggaccaa
1321 gactcaatcc tcagacagtt gtactggaca aggggcccca accatgagaa cccatatgag
1381 agcatggtcc ctcattccca gcgggccaca caacttatgg cccttctcgg tgaggcttca
1441 ctgcatggtc cccagtttta caagaaagtt agcaagatgg ttattaatga gatcaaaagt
1501 ggtggtctgg aattctatgt gcccagacaa gaggccatgt tcagatggat gagattctct
1561 gacctcagca catgggaggg cgatcgcaat cttgctcccg agggtgtgaa tgaagatggc
1621 gtcgaatgac gctgctccat cgaatgatgg tgctgccaac ctcgtaccag aggccaccaa
1681 tgaggttatg gcacttgagc cggtggtggg agcctcaatt gctgctcctg tcgtcggcca
1741 acaaaatata attgacccct ggattagaga aaattttgtt caggcaccac agggtgagtt
1801 tactgtttca ccaaggaact cacctggtga gatgcttcta aatcttgaat taggccctga
1861 gctcaaccct tatctgagtc acttgtcccg catgtataac ggctatgctg gtggtatgca
1921 ggttcaggtg gtcctagctg ggaatgcgtt cacagctggt aaaatcatct ttgccgccgt
1981 cccaccacat ttccctgttg agaacattag tgcagcccaa atcacaatgt gcccccatgt
2041 aattgttgat gtaagacagc ttgagccagt gcttttgccc ctccctgaca taaggaatag
2101 attctttcat tataatcagg aaaatacccc ccggatgaga cttgtggcta tgttgtatac
2161 accccttaga gcaaattctg gtgaggatgt gtttacggtg tcttgcagag ttctgacccg
2221 ccctgccccc gattttgagt tcacgttttt ggtgccacca actgtggaat caaagactaa
2281 gccctttaca ctccctattc tgactcttgg agagctgtcc aactccagat tccccgctcc
2341 gatagatatg ttgtacactg accccaatga ggcaattgtg gtgcaaccac aaaatggcag
2401 gtgcactcta gatggaacac ttcaagggac cacccaactg gtacccaccc aaatttgctc
2461 cttcaggggc acgctaatta gccagacgtc gaggtctgca gattcaacag attcagcccc
2521 acgggtgagg aaccaccctc tccacgttca gctgaagaac ctcgatggga caccatatga
2581 cccaacagat gaggtgccag cagttttggg tgccatagat ttcaaaggaa ctgtgtttgg
2641 ggtcgctagc caaagaaaca ccacagggaa ctctatagga gcaacccgcg cccatgaagt
2701 gcacatagac accacaaacc ctagatacac cccaaagctt ggctctgtgt tgatgtattc
2761 tgaatctagt gattttgatg atggacaacc cacccgcttt acccccattg gcatgggagc
2821 cgatgattgg caccaatggg aattgcccga atattctggt caccttactc ttaacatgaa
2881 tttggccccc gcagttgccc ctgctttccc tggtgagcgc attctcttct tcagatcagt
2941 ggtgccgtct gctggtggct atggatcagg tcacatagat tgcctcatcc cacaggagtg
3001 ggttcagcat ttctaccagg aggccgctcc atcacagtcc gcggtggctc ttatcagata
3061 tgtcaaccct gacactggaa gaaacatctt tgaggcaaaa ctgcatagag aagggttcat
3121 cactgtggca aattctggaa acaaccccat agttgtgccc ccaaatggtt actttaggtt
3181 tgaggcctgg gtcaatcaat tctacacact cacccccatg ggaactggac aggggcgcag
3241 aagagtccaa taatggcagg agctttctta gctggattgg caggtgacgc cataacaagt
3301 ggtgtcgggt ccctaatcaa tgctggggcc aatgcaatca accaaaaggt agaatatgac
3361 tttaataaac agctccaatt ggcatccttc aaacatgaca aagagatgtt gcaatcacaa
3421 gtactggcca ctaaacagct ccaacaggag atgatgaaca taaggcaagg ggtcttgtcc
3481 gctggcggct tttcccctac agatgccgcg agaggtgctg tgaacgcgcc gatgacaaaa
3541 attttggatt ggaatggaac aaggtacttt gccccaaata gtatgaagac aaccagctat
3601 tcgggccagt tttccagcaa ccctgtgcat aggcaaccca ctttaccccg ttctgaaccc
3661 ccaaaaatta aggttaatag tgattctgct agtgtgtata gttctgcatc tactgctcct
3721 tcacaatcaa ctcactcaac ggctttgact gcggggtcta gatcatctag gacaacatcc
3781 tcttctgcag tagcctccac cctatctagg actagtgaat gggtgagagg acaaaatgaa
3841 aggcttagcc cgtttatgga tggtgctctc caaacaactt ttgtcacacc accgtcgagc
3901 aaagcttcat catatgggtc ggtctcaacc gttcccaaag ctgttttgga ctcctggact
3961 cctatgttca atacccatag gcagcctctc ttcgctcatg tgcgcaggcg aggggagtca
4021 cagatttagt gaaaagattg attagg
//