Typing tool
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Typing tool
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Complete norovirus genomes
| KM267740 | GII.6 | |
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| GII.P7 |
ORF1: 1..1671
ORF2: 1652..3295
ORF3: 3295..4071
LOCUS KM267740 4088 bp RNA linear VRL 05-AUG-2015
DEFINITION Norovirus GII isolate Hu/GII.P7/GII.6/Kaohsiung/13-BP-2/2013/TW
nonstructural protein gene, partial cds; and major capsid protein
and minor structural protein genes, complete cds.
ACCESSION KM267740
VERSION KM267740.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 4088)
AUTHORS Wu,F.-T., Chang,C.-Y., Chen,H.-C., Lu,C.-T. and Wu,C.-Y.
TITLE Norovirus GII.P7/GII.6 gastroenteritis outbreaks
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4088)
AUTHORS Wu,F.-T., Chang,C.-Y., Chen,H.-C., Lu,C.-T. and Wu,C.-Y.
TITLE Direct Submission
JOURNAL Submitted (05-AUG-2014) Centers for Disease Control Department of
Health, Center for Research and Diagnostics, No. 161, Kun-Yang
Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..4088
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII.P7/GII.6/Kaohsiung/13-BP-2/2013/TW"
/isolation_source="stool"
/host="Homo sapiens; 9 year old female with diarrhea"
/db_xref="taxon:122929"
/country="Taiwan"
/collection_date="Dec-2013"
CDS <1..1671
/note="ORF1"
/codon_start=1
/product="nonstructural protein"
/protein_id="AKF42428.1"
/translation="PGDCGCPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAV
LEGNENLGTYCGAPILGPGKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKG
PSLQQVMRDQLKPFTEPRGKPPRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLD
KTTSSGSPHHVRKNDHWNGESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKT
DKIYKKIKKRLLWGSDLGTMIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFD
KHSKYRYHYDADYSRWDSTQQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVG
DFVISVQEGLPSGVPCTSQWNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEI
VSTDINLDPMKLTQKLREYGLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFG
KLDQDSILRQLYWTRGPNHENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMV
INEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
CDS 1652..3295
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AKF42429.1"
/translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRNTTGNSIGATRAHEVHIDTTNPRYTPKLGSVLMYSESTDFDDG
QPTRFTPIGMGADDWHQWELPEYSGHLTLSMSLAPAVAPAFPGERILFFRSVVPSAGG
YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ"
CDS 3295..4071
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="AKF42430.1"
/translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTLPRSEPPKIKVNSDSASVYSSASTAPSQST
HSTVLTAGSSSPRTTSSSAVASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKA
SSYGSVSTVPKAVLDSWTPMFNTHRQPLFAHVRRRGESQI"
ORIGIN
1 cctggtgact gcggttgccc ttacatctac aaacgtggca atgatatagt tgtcgcgggt
61 gtccacaccg cagcagcccg gggaggcaac actgtcatat gtgccactca agggcaagat
121 ggggaagcag ttcttgaggg aaatgagaac cttggcactt actgcggtgc tccaatcttg
181 ggtccaggca aggcgcccaa acttagcacg aagaccaagt tctggcgctc atcaccagac
241 gctttgccgc caggcactta tgagcctgcc tacttgggag gtaaggaccc tagagtggaa
301 aaaggaccat ccctgcagca ggtcatgagg gaccagctaa aacctttcac agaacccagg
361 ggcaagccac ctagacctgc agtcttagaa gaagccaaaa agacagtgat gaatgttcta
421 gagcaaacca ttgaccctgc taaaccgtgg acctattccc aagcatgtgc ctcactggac
481 aagaccactt ccagtggtag tccccatcat gtcaggaaaa atgaccattg gaatggggaa
541 tccttcactg gccccctcgc agaccaagca tccaaagcca acctcatgta cgagcaggcc
601 aaacatgtgc agcccgtgta cacggccgca cttaaagatg aactagtcaa aactgacaag
661 atctacaaga agataaagaa aaggctctta tgggggtcgg atcttggtac aatgatcagg
721 tgtgccaggg cctttggcgg cctcatggat agcatgaagg caagctgcat agccctccca
781 tgtagggtag gaatgaacat gaatgaagat ggccccatca tatttgacaa acattctaag
841 tataggtacc attatgatgc tgactattcc aggtgggact caacccagca aaggagcatt
901 ctctcggccg ctatggaagt gatggtgcgg ttctctgctg aaccagagct ggcacaagtg
961 gttgcagagg acctcctggc acccagccaa ctagatgttg gcgatttcgt tatctcagtc
1021 caggagggtc tgccatcagg ggtcccatgc acatcacaat ggaattcaat agcacactgg
1081 atcctaacct tgagtgcaat ggcagaagtg tcgggtctct caccagatgt tgttcaagcc
1141 cactcctgtt tctcattcta cggtgatgat gagatcgtca gcactgacat caaccttgat
1201 cccatgaagt tgacacagaa gctcagagag tatggcctgg tccccacccg gcctgacaaa
1261 actgagggtc ccctcgtaat aactgaagat ctcaccggcc taacgttcct gcgtaggtca
1321 attgcacggg acccagccgg gtggtttgga aaattggacc aagactcaat cctcagacag
1381 ttgtactgga caaggggccc caaccatgag aacccatatg agagcatggt ccctcattcc
1441 cagcgggcca cacaacttat ggcccttctc ggtgaggctt cactgcatgg tccccagttt
1501 tacaagaaag ttagcaagat ggttattaat gagatcaaaa gtggtggtct ggaattctat
1561 gtgcccagac aagaggccat gttcagatgg atgagattct ctgacctcag cacatgggag
1621 ggcgatcgca atcttgctcc cgagggtgtg aatgaagatg gcgtcgaatg acgctgctcc
1681 atcgaatgat ggtgctgcca acctcgtacc agaggccacc aatgaggtta tggcacttga
1741 gccggtggtg ggagcctcaa ttgctgctcc tgtcgtcggc caacaaaata taattgaccc
1801 ctggattaga gaaaattttg ttcaggcacc acagggtgag tttactgttt caccaaggaa
1861 ctcacctggt gagatgcttc taaatcttga attaggccct gagctcaacc cttatctgag
1921 tcacttgtcc cgcatgtata acggctatgc tggtggtatg caggttcagg tggtcctagc
1981 tgggaatgcg ttcacagctg gtaaaatcat ctttgccgcc gtcccaccac atttccctgt
2041 tgagaatatt agtgcagccc aaatcacaat gtgcccccat gtgattgttg atgtaagaca
2101 gcttgagcca gtgcttttgc ccctccccga cataaggaat agattctttc attataatca
2161 ggaaaatacc ccccggatga gacttgtggc tatgttgtac acacccctta gagcaaattc
2221 tggtgaggat gtgtttacgg tgtcttgcag agttctgacc cgccctgctc ccgactttga
2281 gttcacgttt ttggtgccac caactgtgga gtcaaagact aagcccttta cactccctat
2341 tctgactctt ggagagctgt ccaactccag attccccgct ccgatagaca tgttgtacac
2401 tgaccccaat gaggcaattg tggtgcaacc acaaaatggc aggtgcactc tagatggaac
2461 acttcaaggg accacccaac tggtacccac ccaaatttgc tccttcaggg gcacgctaat
2521 tagccagacg tcgaggtctg cagattcaac agattcagcc ccacgggtga ggaaccaccc
2581 tctccacgtt cagctgaaga acctcgatgg gacaccatat gacccaacag atgaggtgcc
2641 agcagttttg ggtgccatag atttcaaagg aactgtgttt ggggtcgcta gccaaagaaa
2701 caccacaggg aactctatag gagcaacccg cgcccatgaa gtgcacatag acactacaaa
2761 ccctagatac accccaaagc ttggctctgt gttgatgtat tctgaatcta ctgattttga
2821 tgatggacaa cccacccgct ttacccccat tggcatggga gccgatgatt ggcaccaatg
2881 ggaattgccc gaatattctg gtcacctcac tcttagcatg agtttggccc ccgcagttgc
2941 ccctgctttc cctggtgagc gcattctctt cttcagatca gtggtgccgt ctgctggtgg
3001 ctatggatca ggtcacatag attgcctcat cccacaggag tgggttcagc atttctacca
3061 ggaggccgct ccatcacagt ccgcggtggc tcttatcaga tatgtcaacc ctgacactgg
3121 aagaaacatc tttgaggcaa aactgcatag agaagggttc atcactgtgg caaattctgg
3181 aaacaacccc atagttgtgc ccccaaatgg ttacttcagg tttgaggcct gggtcaatca
3241 attctacaca ctcaccccca tgggaactgg acaggggcgc agaagagttc aataatggca
3301 ggagctttct tagctgggtt ggcaggtgac gccataacaa gtggtgtcgg gtccctaatc
3361 aatgctgggg ccaatgcaat taaccaaaag gtagaatatg actttaataa acagctccaa
3421 ttggcatcct tcaaacatga caaagagatg ttgcaatcac aagtactggc cactaaacag
3481 ctccagcagg agatgatgaa cataaggcaa ggggtcttgt ccgctggcgg cttttccccc
3541 acagatgccg cgagaggtgc tgtgaacgcg ccgatgacaa aaattttgga ttggaatgga
3601 acaaggtact ttgccccaaa tagtatgaag acaaccagtt attcgggcca gttttccagc
3661 aaccccgtgc ataggcagcc cactttaccc cgttctgaac ccccaaaaat taaggttaat
3721 agtgattctg ctagtgtgta tagttctgca tctactgctc cttcacaatc aactcactca
3781 acggttttga ctgcggggtc tagctcacct aggacaacat cctcttctgc agtagcttcc
3841 accctatcta ggactagtga ctgggtgaga ggacaaaatg aaaggcttag cccgtttatg
3901 gatggtgctc tccaaacaac ttttgtcaca ccaccatcga gcaaagcttc atcatatggg
3961 tcggtctcaa ccgttcccaa agctgttttg gactcctgga ctcctatgtt caatacccat
4021 aggcagcctc tcttcgctca tgtgcgcagg cgaggggagt cacagattta gtgaaaagat
4081 tgattagg
//