Typing tool
|
Complete norovirus genomes
KM245075 | GII.4 Sydney | ||
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GII.P31 |
ORF1: 1..5088 ORF2: 5069..6691 ORF3: 6691..7496LOCUS KM245075 7496 bp RNA linear VRL 01-AUG-2015 DEFINITION Norovirus 13-Z-2/2013/GII.Pe/GII.4/Sydney nonstructural protein gene, partial cds; major capsid protein gene, complete cds; and minor structural protein gene, partial cds. ACCESSION KM245075 VERSION KM245075.1 KEYWORDS . SOURCE Norovirus 13-Z-2/2013/GII.Pe/GII.4/Sydney ORGANISM Norovirus 13-Z-2/2013/GII.Pe/GII.4/Sydney Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7496) AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T. TITLE Norovirus GII.4 gastroenteritis outbreaks JOURNAL Unpublished REFERENCE 2 (bases 1 to 7496) AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T. TITLE Direct Submission JOURNAL Submitted (29-JUL-2014) Centers for Disease Control department of health Taiwain, R.O.C., Center for Research and Diagnostics, No. 161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C. FEATURES Location/Qualifiers source 1..7496 /organism="Norovirus 13-Z-2/2013/GII.Pe/GII.4/Sydney" /mol_type="genomic RNA" /isolate="13-Z-2/2013/GII.Pe/GII.4 Sydney" /isolation_source="stool specimen from a 72-year female with diarrhea" /host="Homo sapiens" /db_xref="taxon:1631327" /country="Taiwan" /collection_date="Feb-2013" CDS <1..5088 /note="ORF1" /codon_start=1 /product="nonstructural protein" /protein_id="AJZ77021.1" /translation="SNDASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQPP PKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPEETNT AFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKV ELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSR RMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPL NILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVE LVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEE ANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSAS PDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKI AASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTL NCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRD FPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLL HERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLK QALKNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCARI RYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPK DDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSI EEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSE IRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFI TSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVAT LLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCP YIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSA PKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKP PRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGES FTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMI RCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQ RDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWN SIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGL KPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHED PFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFR WMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5069..6691 /note="VP1" /codon_start=1 /product="major capsid protein" /protein_id="AJZ77022.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSRNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGVL TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDRDFEANQNTKFTPVGVIQDG STTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6691..>7496 /note="VP2" /codon_start=1 /product="minor structural protein" /protein_id="AJZ77023.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKDILDSWTGAFNTRRQPLFAHIRKRGESRA" ORIGIN 1 tctaacgacg cttccgctgc cgctgttgcc aacagcaaca acgacatcgc aaaatcttca 61 agtgacggtg tgttttctaa catggctgtc acttttaagc gggccctcgg ggcgcggcct 121 aaacagccgc ccccgaagga aataccaccc agacccccgc gaccacccac accagaattg 181 gtcaaaaaga tccctcctcc cccacccaac ggggaggatg aactagtggt ctcttacagc 241 gccaaagatg gcgtttccgg actgcctgag ctcaccactg tcagacaacc ggaagaaacc 301 aacacggcgt tcagtgtccc cccactcaac caaagggaga gcagggacgc caaggagcca 361 ctaactggaa caatcattga aatgtgggat ggagaaatct accattacgg cctgtacgtg 421 gaacgaggtc ttatacttgg tgtgcacaag ccaccggcag ccattagcct tgccaaggtc 481 gagctagcac cgctctcttt gttctggaga cctgtataca ccccccagta tctcatctct 541 ccagacactc ttaggagatt acatggagag tcattcccct acactgcatt tgacaacaat 601 tgctacgcct tttgttgttg ggtattagac ctaaacgact catggctaag caggagaatg 661 attcagagaa caacaggctt cttcaggccg taccaggatt ggaacaggaa acccctcccc 721 actatggatg attccaaatt aaagaaggta gccaacatat tcttgtgcac tttgtcttca 781 ctattcacca gacccattaa ggacataata gggaagttga aacctcttaa catccttaac 841 attctggcta catgtgattg gaccttcgca ggcatagtgg aatccttaat actcttggca 901 gaactctttg gagttttctg gacaccccca gatgtgtctg cgatgatcgc ccccttgcta 961 ggtgattatg aactgcaagg acctgaggac cttgcagtgg aactggtccc aatagtgatg 1021 ggggggatag gtttggtgct aggatttacc aaagagaaaa tcggaaagat gctatcgtcc 1081 gctgcatcca ctttaagagc ttgtaaagac cttggtgcat acggactgga aatcttaaaa 1141 ttggtcatga agtggttctt cccaaagaaa gaggaagcaa atgaactggc tatggtgaga 1201 tccatcgagg atgcagtact agacctcgag gcaattgaaa acaaccacat gaccacccta 1261 ctcaaagaca aagacagctt ggcaacctac atgagaaccc ttgaccttga ggaggagaaa 1321 gccagaaaac tctcaaccaa atctgcttca cccgatattg tgggcacaat caactctctt 1381 ctggcaagaa tcgctgctgc acgctcccta gtgcatcggg cgaaagaaga gctctccagc 1441 aggccgagac ctgtcgttgt gatgatatcg ggaagaccag ggatagggaa aactcacctt 1501 gccagggagc tggccaagaa gatcgcggcc tccctcacag gggaccagcg tgtgggtctt 1561 atcccacgca atggtgtcga tcactgggac gcatacaagg gcgaaagagt tgtcctatgg 1621 gacgactatg gaatgagcaa ccccatccat gatgccctca ggttgcagga gcttgctgac 1681 acttgccccc tcacgctaaa ttgtgacaga attgagaaca aagggaaagt ctttgacagt 1741 gatgccataa ttatcaccac caatctggcc aacccagcac cactggatta tgtcaacttt 1801 gaagcgtgct cgagacgcat tgatttcctc gtgtacgcag aagcccctga ggtggagaag 1861 gcaaagcgcg acttcccagg tcaacctgac atgtggaaga acgctttcag tcctgacttc 1921 tcacacataa aattgtcatt ggctccacag ggtggttttg acaagaacgg caacaccccg 1981 catggaaaag gggtcatgaa gaccctcacc actggctccc tcatcgcccg agcatcaggg 2041 ttactccatg agaggctaga tgaatatgaa ctgcaaggcc cagccctcac cactttcaac 2101 tttgaccgca acaagatact tgcttttaga cagcttgctg ctgaaaacaa gtatgggctg 2161 atggacacaa tgagagttgg aaaacagctc aaggatgtca agaccatgtc agacctcaaa 2221 caagcactca agaacatcgc gatcaagaag tgccagatag tgtacaatgg tggcacctac 2281 acacttgagg ctgatggcaa gggtagtgtg aaagttgaca aagtgcaaag tgccactgtg 2341 cagaccaaca atgaactagc cggtgcccta caccacctaa ggtgcgctag aatcagatac 2401 tatgttaagt gcgtccagga ggcactgtat tccatcatcc aaatcgctgg ggctgcattc 2461 gtcaccacgc gcatcgctaa gcgcatgaat atacagaatc tctggtccaa gccacaggtg 2521 gaagacacag aagagatggc caacaaagat ggttgcctaa aacccaaaga tgatgaagag 2581 tttgtcgtct catccgacga catcaaaact gagggcaaga aagggaagaa caagtccggc 2641 cgtggcaaga agcacacagc cttttcaagt aaagggctca gtgatgagga gtacgatgag 2701 tacaagagaa tcagagaaga aaggaatggt aagtactcca tagaagagta ccttcaggac 2761 agagacaggt actacgagga ggtggccatt gccagggcaa ccgaagagga cttctgtgaa 2821 gaagaagagg ccaaaatccg gcagagaatt ttcagaccaa caaggaaaca acgcaaagaa 2881 gagagggcct ctctcggctt ggtcacaggc tctgaaatca ggaagagaaa cccagaagac 2941 ttcaaaccca agggaaagct gtgggctgat gatgacagaa gtgttgacta caatgagaaa 3001 ctcaactttg aggccccacc aagcatctgg tcgcggatag tcaactttgg ttcaggctgg 3061 ggcttctggg tctcccccag tctgtttata acatcaaccc atgtcatacc ccaaggtgca 3121 aaagagttct tcggagtccc tatcaagcaa atccagatac acaagtcagg tgaattctgc 3181 cggttgagat tcccaaagcc aatcagaact gatgtgacgg gcatgattct agaagaaggt 3241 gcgcccgagg ggaccgtggc cacactgctc atcaagagac caactggaga gctcatgcct 3301 ctggcagcca gaatggggac ccatgcaacc atgaaaattc aggggcgcac agttggaggg 3361 caaatgggta tgctcctgac aggatccaac gccaagagta tggacctagg cacaacacca 3421 ggcgactgcg gctgccccta catctacaag agggggaatg actacgtggt cataggagtc 3481 catacggccg ctgcccgtgg aggaaacact gtcatatgtg ccacccaggg gagtgaggga 3541 gaagccacac ttgaaggagg tgacagtaaa gggacatact gtggcgcacc aatcttgggc 3601 ccagggagcg ctccgaagct cagtaccaag actaagtttt ggagatcatc cacaacacca 3661 ctcccacctg gcacctacga accagcctac ctcggtggca aagaccctag agtcaaaggt 3721 ggcccttcat tgcaacaagt tatgagggac cagctgaagc cattcacaga acccagaggc 3781 aaaccaccaa gaccaaatgt gttggaagct gccaagaaaa ccatcatcaa tgtccttgag 3841 caaacaattg atccacccca aaaatggtca tttgcgcaag cttgcgcatc ccttgacaaa 3901 accacctcca gcggccaccc gcaccacatg cggaaaaacg actgttggaa tggggagtcc 3961 ttcacaggaa aattggctga tcaagcctcc aaggccaacc taatgtttga agagggaaag 4021 aacatgactc cagtctacac aggtgcactt aaagatgagt tggtaaagac cgataaagtt 4081 tatggtaagg tcaagaagag gcttctgtgg ggttcagatc tggcgaccat gatacggtgc 4141 gcccgagctt ttggaggcct catggatgaa ctcaaggcac actgtgtcac acttcctgtc 4201 agagttggta tgaacatgaa tgaggatggc cccatcatct ttgagaagca ctccagatat 4261 agatatcact atgatgctga ttattcccgg tgggactcaa cacaacaaag ggatgtgcta 4321 gcagcagcac tagaaatcat ggttaagttc tctccagaac cacacctggc ccagatagtt 4381 gcagaagacc tcctctcccc tagcgtgatg gatgtaggtg actttcaaat atcaataagt 4441 gagggtctcc cctctggggt accttgtacc tcccagtgga attccatcgc ccactggctc 4501 ctcactctgt gtgcactctc tgaagtcacg gacctgtccc ctgacatcat tcaggccaac 4561 tcccttttct ccttctatgg tgatgatgag attgtaagca cagacataaa gttggaccca 4621 gagaagctga cagcaaaact caaggagtac gggctgaaac caacccgccc cgacaaaact 4681 gaaggacccc ttgttatctc tgaagacctg gatggcctga cattcctccg gagaactgtg 4741 acccgtgatc cagctggctg gtttggaaaa ttggaacaaa gttcaattct caggcaaatg 4801 tactggacca ggggtcccaa ccatgaagat ccatttgaaa caatgatacc acactcccaa 4861 agacccatac aattgatgtc cttgctgggc gaggctgcac tccacggccc ggcattctat 4921 agcaaaatta gcaaattagt cattgcagag ttgaaggaag gtggcatgga tttttacgta 4981 cccagacaag agccaatgtt cagatggatg agattctcag atctgagcac gtgggagggc 5041 gatcgcaatc tggctcccag ttttgtgaat gaagatggcg tcgagtgacg ccaacccatc 5101 tgatgggtcc gcagccaacc tcgtcccaga ggtcaacaat gaggttatgg ctctggagcc 5161 cgttgttggt gccgccattg cggcacctgt agcgggccaa caaaatgtaa ttgacccctg 5221 gattagaaat aattttgtac aagcccctgg tggagagttt acagtatccc ctagaaacgc 5281 tccaggtgaa atactatgga gcgcgccctt gggccctgat ctaaatccct acctatccca 5341 tttggccaga atgtacaatg gttatgcagg tggttttgaa gtgcaggtaa ttctcgcggg 5401 gaacgcgttc accgccggga aggtcatatt tgcagcagtc ccaccaaatt ttccaactga 5461 aggcttgagc cccagccagg tcactatgtt cccccatata gtagtagatg ttaggcaact 5521 agaacctgtg ttgattccct tacccgatgt taggaataat ttctatcatt ataatcaatc 5581 aaatgatccc accattaagt tgatagcaat gttgtataca ccacttaggg ctaataatgc 5641 tggggatgat gtcttcacag tttcttgccg agttctcacg agaccatccc ccgattttga 5701 tttcatattt ctagtgccac ccacagttga gtcaagaact aaaccattct ctgtcccagt 5761 tttaactgtt gaggagatga ccaattcaag attccccatt cctttggaaa agttgttcac 5821 gggtcccagc agtgcctttg ttgtccaacc acaaaacggt aggtgcacga ctgatggcgt 5881 gctcctaggc accacccaac tgtctcctgt caacatctgc accttcaggg gagatgtcac 5941 ccatatcaca ggtagtcgta actacacaat gaatttggct tctcaaaatt ggagcaatta 6001 tgacccaaca gaagaaatcc cagcccctct aggaactcca gattttgtgg ggaagattca 6061 aggcgtgctc acccaaacca caaggacaga tggctcaaca cgcggccaca aagccacagt 6121 gtacactggg agcgccgact ttgctccaaa actgggtaga gttcaatttg aaactgacac 6181 agaccgtgat tttgaagcta accaaaacac aaagttcacc ccagttggtg tcatccaaga 6241 tggtagcacc acccaccgaa atgaacccca acagtgggtg cttccaagtt actcaggcag 6301 aaatactcct aatgtgcatc tggcccccgc tgtagccccc acttttccgg gtgagcaact 6361 tctcttcttc agatccacca tgcccggatg cagcgggtac cccaacatgg acttggactg 6421 tctgctcccc caggaatggg tgcagtactt ctaccaagag gcagccccag cacaatctga 6481 tgtggctctg ctaagatttg tgaatccaga cacaggtagg gttttgtttg agtgtaagct 6541 tcataaatca ggctatgtta cagtggctca cactggccaa catgatttgg ttatcccccc 6601 caatggttat tttaggtttg attcctgggt caaccagttt tacacgcttg cccccatggg 6661 aaatggaacg gggcgtagac gtgcactata atggctggag ctttctttgc tggattggca 6721 tctgatgtcc ttggctctgg acttggttcc cttatcaatg ctggggctgg ggccatcaac 6781 caaaaagttg agtttgaaaa taacagaaaa ttgcaacaag catccttcca atttagcagc 6841 aatctacaac aggcttcctt tcaacatgac aaagagatgc tccaagcaca aattgaggcc 6901 accaaaaggc tacaacagga aatgatgaaa gttaagcagg caatgctcct agagggtggg 6961 ttctctgaga cagatgcagc ccgcggggca atcaacgccc ccatgacaaa agctttggac 7021 tggagcggga caaggtactg ggctcccgat gctaggacta caacatacaa tgcaggccgc 7081 ttttctaccc ctcaaccatc gggggcactg ccaggaagag ctaatcttag ggatgctgtc 7141 cctgctcggg gttcctccag taagtcttct aattcttcta ctgctacttc tgtgtactca 7201 aatcaaacta cttcaacgag gcttggttct acagctggtt ctggcaccag tgtctcgagc 7261 ttcccgtcaa ctgcaaggac taggagctgg gttgaggatc aaagtaggaa tttgtcacct 7321 ttcatgaggg gggcccacaa catatcgttt gtcaccccac catctagcag atcctctagc 7381 caaggcacag tctcaaccgt gcctaaagat attttggact cctggactgg cgctttcaac 7441 acgcgcaggc agccactctt cgctcacatt cgtaagcgag gggagtcacg ggcgtg //