Typing tool
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Typing tool
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Complete norovirus genomes
| KM245075 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5088
ORF2: 5069..6691
ORF3: 6691..7496
LOCUS KM245075 7496 bp RNA linear VRL 01-AUG-2015
DEFINITION Norovirus 13-Z-2/2013/GII.Pe/GII.4/Sydney nonstructural protein
gene, partial cds; major capsid protein gene, complete cds; and
minor structural protein gene, partial cds.
ACCESSION KM245075
VERSION KM245075.1
KEYWORDS .
SOURCE Norovirus 13-Z-2/2013/GII.Pe/GII.4/Sydney
ORGANISM Norovirus 13-Z-2/2013/GII.Pe/GII.4/Sydney
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7496)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Norovirus GII.4 gastroenteritis outbreaks
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7496)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Direct Submission
JOURNAL Submitted (29-JUL-2014) Centers for Disease Control department of
health Taiwain, R.O.C., Center for Research and Diagnostics, No.
161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..7496
/organism="Norovirus 13-Z-2/2013/GII.Pe/GII.4/Sydney"
/mol_type="genomic RNA"
/isolate="13-Z-2/2013/GII.Pe/GII.4 Sydney"
/isolation_source="stool specimen from a 72-year female
with diarrhea"
/host="Homo sapiens"
/db_xref="taxon:1631327"
/geo_loc_name="Taiwan"
/collection_date="Feb-2013"
CDS <1..5088
/note="ORF1"
/codon_start=1
/product="nonstructural protein"
/protein_id="AJZ77021.1"
/translation="SNDASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQPP
PKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPEETNT
AFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKV
ELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSR
RMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPL
NILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVE
LVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEE
ANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSAS
PDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKI
AASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTL
NCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRD
FPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLL
HERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLK
QALKNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCARI
RYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPK
DDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSI
EEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSE
IRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFI
TSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVAT
LLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCP
YIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSA
PKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKP
PRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGES
FTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMI
RCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQ
RDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWN
SIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGL
KPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHED
PFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFR
WMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 5069..6691
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AJZ77022.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDRDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 6691..>7496
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="AJZ77023.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKDILDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 tctaacgacg cttccgctgc cgctgttgcc aacagcaaca acgacatcgc aaaatcttca
61 agtgacggtg tgttttctaa catggctgtc acttttaagc gggccctcgg ggcgcggcct
121 aaacagccgc ccccgaagga aataccaccc agacccccgc gaccacccac accagaattg
181 gtcaaaaaga tccctcctcc cccacccaac ggggaggatg aactagtggt ctcttacagc
241 gccaaagatg gcgtttccgg actgcctgag ctcaccactg tcagacaacc ggaagaaacc
301 aacacggcgt tcagtgtccc cccactcaac caaagggaga gcagggacgc caaggagcca
361 ctaactggaa caatcattga aatgtgggat ggagaaatct accattacgg cctgtacgtg
421 gaacgaggtc ttatacttgg tgtgcacaag ccaccggcag ccattagcct tgccaaggtc
481 gagctagcac cgctctcttt gttctggaga cctgtataca ccccccagta tctcatctct
541 ccagacactc ttaggagatt acatggagag tcattcccct acactgcatt tgacaacaat
601 tgctacgcct tttgttgttg ggtattagac ctaaacgact catggctaag caggagaatg
661 attcagagaa caacaggctt cttcaggccg taccaggatt ggaacaggaa acccctcccc
721 actatggatg attccaaatt aaagaaggta gccaacatat tcttgtgcac tttgtcttca
781 ctattcacca gacccattaa ggacataata gggaagttga aacctcttaa catccttaac
841 attctggcta catgtgattg gaccttcgca ggcatagtgg aatccttaat actcttggca
901 gaactctttg gagttttctg gacaccccca gatgtgtctg cgatgatcgc ccccttgcta
961 ggtgattatg aactgcaagg acctgaggac cttgcagtgg aactggtccc aatagtgatg
1021 ggggggatag gtttggtgct aggatttacc aaagagaaaa tcggaaagat gctatcgtcc
1081 gctgcatcca ctttaagagc ttgtaaagac cttggtgcat acggactgga aatcttaaaa
1141 ttggtcatga agtggttctt cccaaagaaa gaggaagcaa atgaactggc tatggtgaga
1201 tccatcgagg atgcagtact agacctcgag gcaattgaaa acaaccacat gaccacccta
1261 ctcaaagaca aagacagctt ggcaacctac atgagaaccc ttgaccttga ggaggagaaa
1321 gccagaaaac tctcaaccaa atctgcttca cccgatattg tgggcacaat caactctctt
1381 ctggcaagaa tcgctgctgc acgctcccta gtgcatcggg cgaaagaaga gctctccagc
1441 aggccgagac ctgtcgttgt gatgatatcg ggaagaccag ggatagggaa aactcacctt
1501 gccagggagc tggccaagaa gatcgcggcc tccctcacag gggaccagcg tgtgggtctt
1561 atcccacgca atggtgtcga tcactgggac gcatacaagg gcgaaagagt tgtcctatgg
1621 gacgactatg gaatgagcaa ccccatccat gatgccctca ggttgcagga gcttgctgac
1681 acttgccccc tcacgctaaa ttgtgacaga attgagaaca aagggaaagt ctttgacagt
1741 gatgccataa ttatcaccac caatctggcc aacccagcac cactggatta tgtcaacttt
1801 gaagcgtgct cgagacgcat tgatttcctc gtgtacgcag aagcccctga ggtggagaag
1861 gcaaagcgcg acttcccagg tcaacctgac atgtggaaga acgctttcag tcctgacttc
1921 tcacacataa aattgtcatt ggctccacag ggtggttttg acaagaacgg caacaccccg
1981 catggaaaag gggtcatgaa gaccctcacc actggctccc tcatcgcccg agcatcaggg
2041 ttactccatg agaggctaga tgaatatgaa ctgcaaggcc cagccctcac cactttcaac
2101 tttgaccgca acaagatact tgcttttaga cagcttgctg ctgaaaacaa gtatgggctg
2161 atggacacaa tgagagttgg aaaacagctc aaggatgtca agaccatgtc agacctcaaa
2221 caagcactca agaacatcgc gatcaagaag tgccagatag tgtacaatgg tggcacctac
2281 acacttgagg ctgatggcaa gggtagtgtg aaagttgaca aagtgcaaag tgccactgtg
2341 cagaccaaca atgaactagc cggtgcccta caccacctaa ggtgcgctag aatcagatac
2401 tatgttaagt gcgtccagga ggcactgtat tccatcatcc aaatcgctgg ggctgcattc
2461 gtcaccacgc gcatcgctaa gcgcatgaat atacagaatc tctggtccaa gccacaggtg
2521 gaagacacag aagagatggc caacaaagat ggttgcctaa aacccaaaga tgatgaagag
2581 tttgtcgtct catccgacga catcaaaact gagggcaaga aagggaagaa caagtccggc
2641 cgtggcaaga agcacacagc cttttcaagt aaagggctca gtgatgagga gtacgatgag
2701 tacaagagaa tcagagaaga aaggaatggt aagtactcca tagaagagta ccttcaggac
2761 agagacaggt actacgagga ggtggccatt gccagggcaa ccgaagagga cttctgtgaa
2821 gaagaagagg ccaaaatccg gcagagaatt ttcagaccaa caaggaaaca acgcaaagaa
2881 gagagggcct ctctcggctt ggtcacaggc tctgaaatca ggaagagaaa cccagaagac
2941 ttcaaaccca agggaaagct gtgggctgat gatgacagaa gtgttgacta caatgagaaa
3001 ctcaactttg aggccccacc aagcatctgg tcgcggatag tcaactttgg ttcaggctgg
3061 ggcttctggg tctcccccag tctgtttata acatcaaccc atgtcatacc ccaaggtgca
3121 aaagagttct tcggagtccc tatcaagcaa atccagatac acaagtcagg tgaattctgc
3181 cggttgagat tcccaaagcc aatcagaact gatgtgacgg gcatgattct agaagaaggt
3241 gcgcccgagg ggaccgtggc cacactgctc atcaagagac caactggaga gctcatgcct
3301 ctggcagcca gaatggggac ccatgcaacc atgaaaattc aggggcgcac agttggaggg
3361 caaatgggta tgctcctgac aggatccaac gccaagagta tggacctagg cacaacacca
3421 ggcgactgcg gctgccccta catctacaag agggggaatg actacgtggt cataggagtc
3481 catacggccg ctgcccgtgg aggaaacact gtcatatgtg ccacccaggg gagtgaggga
3541 gaagccacac ttgaaggagg tgacagtaaa gggacatact gtggcgcacc aatcttgggc
3601 ccagggagcg ctccgaagct cagtaccaag actaagtttt ggagatcatc cacaacacca
3661 ctcccacctg gcacctacga accagcctac ctcggtggca aagaccctag agtcaaaggt
3721 ggcccttcat tgcaacaagt tatgagggac cagctgaagc cattcacaga acccagaggc
3781 aaaccaccaa gaccaaatgt gttggaagct gccaagaaaa ccatcatcaa tgtccttgag
3841 caaacaattg atccacccca aaaatggtca tttgcgcaag cttgcgcatc ccttgacaaa
3901 accacctcca gcggccaccc gcaccacatg cggaaaaacg actgttggaa tggggagtcc
3961 ttcacaggaa aattggctga tcaagcctcc aaggccaacc taatgtttga agagggaaag
4021 aacatgactc cagtctacac aggtgcactt aaagatgagt tggtaaagac cgataaagtt
4081 tatggtaagg tcaagaagag gcttctgtgg ggttcagatc tggcgaccat gatacggtgc
4141 gcccgagctt ttggaggcct catggatgaa ctcaaggcac actgtgtcac acttcctgtc
4201 agagttggta tgaacatgaa tgaggatggc cccatcatct ttgagaagca ctccagatat
4261 agatatcact atgatgctga ttattcccgg tgggactcaa cacaacaaag ggatgtgcta
4321 gcagcagcac tagaaatcat ggttaagttc tctccagaac cacacctggc ccagatagtt
4381 gcagaagacc tcctctcccc tagcgtgatg gatgtaggtg actttcaaat atcaataagt
4441 gagggtctcc cctctggggt accttgtacc tcccagtgga attccatcgc ccactggctc
4501 ctcactctgt gtgcactctc tgaagtcacg gacctgtccc ctgacatcat tcaggccaac
4561 tcccttttct ccttctatgg tgatgatgag attgtaagca cagacataaa gttggaccca
4621 gagaagctga cagcaaaact caaggagtac gggctgaaac caacccgccc cgacaaaact
4681 gaaggacccc ttgttatctc tgaagacctg gatggcctga cattcctccg gagaactgtg
4741 acccgtgatc cagctggctg gtttggaaaa ttggaacaaa gttcaattct caggcaaatg
4801 tactggacca ggggtcccaa ccatgaagat ccatttgaaa caatgatacc acactcccaa
4861 agacccatac aattgatgtc cttgctgggc gaggctgcac tccacggccc ggcattctat
4921 agcaaaatta gcaaattagt cattgcagag ttgaaggaag gtggcatgga tttttacgta
4981 cccagacaag agccaatgtt cagatggatg agattctcag atctgagcac gtgggagggc
5041 gatcgcaatc tggctcccag ttttgtgaat gaagatggcg tcgagtgacg ccaacccatc
5101 tgatgggtcc gcagccaacc tcgtcccaga ggtcaacaat gaggttatgg ctctggagcc
5161 cgttgttggt gccgccattg cggcacctgt agcgggccaa caaaatgtaa ttgacccctg
5221 gattagaaat aattttgtac aagcccctgg tggagagttt acagtatccc ctagaaacgc
5281 tccaggtgaa atactatgga gcgcgccctt gggccctgat ctaaatccct acctatccca
5341 tttggccaga atgtacaatg gttatgcagg tggttttgaa gtgcaggtaa ttctcgcggg
5401 gaacgcgttc accgccggga aggtcatatt tgcagcagtc ccaccaaatt ttccaactga
5461 aggcttgagc cccagccagg tcactatgtt cccccatata gtagtagatg ttaggcaact
5521 agaacctgtg ttgattccct tacccgatgt taggaataat ttctatcatt ataatcaatc
5581 aaatgatccc accattaagt tgatagcaat gttgtataca ccacttaggg ctaataatgc
5641 tggggatgat gtcttcacag tttcttgccg agttctcacg agaccatccc ccgattttga
5701 tttcatattt ctagtgccac ccacagttga gtcaagaact aaaccattct ctgtcccagt
5761 tttaactgtt gaggagatga ccaattcaag attccccatt cctttggaaa agttgttcac
5821 gggtcccagc agtgcctttg ttgtccaacc acaaaacggt aggtgcacga ctgatggcgt
5881 gctcctaggc accacccaac tgtctcctgt caacatctgc accttcaggg gagatgtcac
5941 ccatatcaca ggtagtcgta actacacaat gaatttggct tctcaaaatt ggagcaatta
6001 tgacccaaca gaagaaatcc cagcccctct aggaactcca gattttgtgg ggaagattca
6061 aggcgtgctc acccaaacca caaggacaga tggctcaaca cgcggccaca aagccacagt
6121 gtacactggg agcgccgact ttgctccaaa actgggtaga gttcaatttg aaactgacac
6181 agaccgtgat tttgaagcta accaaaacac aaagttcacc ccagttggtg tcatccaaga
6241 tggtagcacc acccaccgaa atgaacccca acagtgggtg cttccaagtt actcaggcag
6301 aaatactcct aatgtgcatc tggcccccgc tgtagccccc acttttccgg gtgagcaact
6361 tctcttcttc agatccacca tgcccggatg cagcgggtac cccaacatgg acttggactg
6421 tctgctcccc caggaatggg tgcagtactt ctaccaagag gcagccccag cacaatctga
6481 tgtggctctg ctaagatttg tgaatccaga cacaggtagg gttttgtttg agtgtaagct
6541 tcataaatca ggctatgtta cagtggctca cactggccaa catgatttgg ttatcccccc
6601 caatggttat tttaggtttg attcctgggt caaccagttt tacacgcttg cccccatggg
6661 aaatggaacg gggcgtagac gtgcactata atggctggag ctttctttgc tggattggca
6721 tctgatgtcc ttggctctgg acttggttcc cttatcaatg ctggggctgg ggccatcaac
6781 caaaaagttg agtttgaaaa taacagaaaa ttgcaacaag catccttcca atttagcagc
6841 aatctacaac aggcttcctt tcaacatgac aaagagatgc tccaagcaca aattgaggcc
6901 accaaaaggc tacaacagga aatgatgaaa gttaagcagg caatgctcct agagggtggg
6961 ttctctgaga cagatgcagc ccgcggggca atcaacgccc ccatgacaaa agctttggac
7021 tggagcggga caaggtactg ggctcccgat gctaggacta caacatacaa tgcaggccgc
7081 ttttctaccc ctcaaccatc gggggcactg ccaggaagag ctaatcttag ggatgctgtc
7141 cctgctcggg gttcctccag taagtcttct aattcttcta ctgctacttc tgtgtactca
7201 aatcaaacta cttcaacgag gcttggttct acagctggtt ctggcaccag tgtctcgagc
7261 ttcccgtcaa ctgcaaggac taggagctgg gttgaggatc aaagtaggaa tttgtcacct
7321 ttcatgaggg gggcccacaa catatcgttt gtcaccccac catctagcag atcctctagc
7381 caaggcacag tctcaaccgt gcctaaagat attttggact cctggactgg cgctttcaac
7441 acgcgcaggc agccactctt cgctcacatt cgtaagcgag gggagtcacg ggcgtg
//