Typing tool
|
Complete norovirus genomes
KM245074 | GII.4 Den Haag | ||
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GII.P4 Den Haag |
ORF1: 1..1710 ORF2: 1691..3313 ORF3: 3313..4045LOCUS KM245074 4045 bp RNA linear VRL 01-AUG-2015 DEFINITION Norovirus 09-N-1/2009/GII.4/DenHaag/2006b nonstructural protein gene, partial cds; major capsid protein gene, complete cds; and minor structural protein gene, partial cds. ACCESSION KM245074 VERSION KM245074.1 KEYWORDS . SOURCE Norovirus 09-N-1/2009/GII.4/DenHaag/2006b ORGANISM Norovirus 09-N-1/2009/GII.4/DenHaag/2006b Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 4045) AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T. TITLE Norovirus GII.4 gastroenteritis outbreaks JOURNAL Unpublished REFERENCE 2 (bases 1 to 4045) AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T. TITLE Direct Submission JOURNAL Submitted (28-JUL-2014) Centers for Disease Control department of health Taiwain, R.O.C., Center for Research and Diagnostics, No. 161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C. FEATURES Location/Qualifiers source 1..4045 /organism="Norovirus 09-N-1/2009/GII.4/DenHaag/2006b" /mol_type="genomic RNA" /isolate="09-N-1/2009/GII.4 DenHaag 2006b" /isolation_source="stool specimen from a 15-year old female with diarrhea" /host="Homo sapiens" /db_xref="taxon:1631317" /country="Taiwan" /collection_date="Mar-2009" CDS <1..1710 /note="ORF1" /codon_start=1 /product="nonstructural protein" /protein_id="AJZ77018.1" /translation="TGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAARGGNT VICATQGGEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTAPLPPGTYEP AYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAAKKTIINVLEQTIDPP EKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFEEGKNMTP VYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKAHCVTLPVRV GMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRVVLAAALEIMVKFSSEPHLAQIV AEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQ ANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFL RRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSESMIPHSQRPIQLMSLLGEAAL HGPTFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNED GVE" CDS 1691..3313 /note="VP1" /codon_start=1 /product="major capsid protein" /protein_id="AJZ77019.1" /translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL TQTTKGDGSTRGHKATVYTGSADFTPKLGSVQFATDTENDFETHQNTKFTPVGVIQDG STTHRNEPQQWVLPSYSGRNVHNVHLAPAVAPNFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 3313..>4045 /note="VP2" /codon_start=1 /product="minor structural protein" /protein_id="AJZ77020.1" /translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRINPRTPAPARGSPSISS NASTATSIYSNQTVSTRLGSTAGSGTNVSGLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKDVLDS" ORIGIN 1 acaggatcca acgctaaaag catggatcta ggcaccacac cgggtgattg cggctgtccc 61 tacatctaca agagaggaaa cgactatgtg gtcattggag tccacacggc tgccgctcgt 121 gggggaaaca ctgtcatatg tgccacccag gggggtgagg gggaagctac acttgaaggt 181 ggtgacagta agggaacata ctgtggtgca ccaatcctag gcccagggag tgccccaaaa 241 ctcagcacca aaaccaaatt ctggagatca tccacagcac cactcccacc tggcacctat 301 gaaccagcct accttggtgg caaagacccc agagtcaagg gtggcccatc gttgcagcaa 361 gtcatgaggg accagctgaa accatttaca gagcctaggg gtaagccacc aaagccaagt 421 gtgttagaag ctgccaagaa gaccatcatc aatgtccttg aacagacaat tgacccacct 481 gagaagtggt cgttcgcaca agcttgcgcg tcccttgata agaccacttc tagcggccat 541 ccgcaccaca tgcggaaaaa cgactgctgg aacggggagt ccttcacagg caagctggca 601 gaccaggctt ccaaggccaa cctgatgttt gaagaaggga agaacatgac cccagtctac 661 acaggtgcac ttaaggatga attagtcaaa actgacaaaa tttatggtaa gatcaagaag 721 aggcttctct ggggctcgga tttggcaacc atgatccggt gtgctcgagc attcggaggt 781 ctgatggatg aactcaaagc acactgtgtc acacttcctg tcagagttgg tatgaatatg 841 aatgaggacg gccccatcat cttcgagaag cattccaggt acagatacca ctatgatgct 901 gattactctc ggtgggattc aacacaacag agagtcgtgc tggcagctgc tctagaaatc 961 atggttaaat tctcctcaga accacatttg gctcagatag tagcagaaga cctcctttct 1021 cctagcgtag tggatgtggg tgacttcaca atatcaatca acgagggtct tccctctggg 1081 gtgccctgca cctcccaatg gaactccatc gcccactggc ttctcactct ctgtgcactc 1141 tccgaagtca caaatttgtc tccagacatc atacaggcta attctctctt ctccttctat 1201 ggtgatgatg aaattgttag tacagacata aaattagacc cagagaagtt gacagcaaag 1261 cttaaggaat atgggttgaa accaacccgc cctgacaaaa ctgaagggcc tcttgttatc 1321 tctgaagact tagacggttt gactttcctg cggagaactg tgacccgcga cccagctggt 1381 tggtttggaa aactggaaca gagctcaata ctcaggcaaa tgtactggac taggggcccc 1441 aaccatgaag acccatctga atcaatgatc ccacactctc aaaggcccat acaattgatg 1501 tccttactgg gagaggccgc actccacggc ccaacattct acagtaagat cagcaaatta 1561 gtcattgcag agctgaaaga aggtggcatg gatttttacg tgcccaggca agagccaatg 1621 ttcagatgga tgagattctc ggatctgagc acgtgggagg gcgatcgcaa tctggctccc 1681 agttttgtga atgaagatgg cgtcgaatga cgccaaccca tctgatgggt ccgcagccaa 1741 cctcgtccca gaggtcaaca atgaggttat ggctttggag cccgttgtcg gtgccgctat 1801 tgcggcgcct gtagcgggcc aacaaaatgt aattgacccc tggattagaa ataattttgt 1861 acaagcccct ggtggagagt tcacagtatc ccctagaaac gctccaggtg aaatactatg 1921 gagcgcgccc ttaggtcctg atctgaatcc ctacctatct catttggcca gaatgtataa 1981 tggttatgca ggtggttttg aagtgcaggt gatcctcgcg gggaacgcgt tcaccgccgg 2041 aaaaattata tttgcagcag tcccaccaaa ttttccaact gaaggcttga gtcccagcca 2101 ggtcactatg ttcccccaca taatagtaga tgttaggcaa ttggaacctg tgttgatccc 2161 cttacctgat gttaggaata acttctatca ttataatcag tcaaatgatt ccaccattaa 2221 gttgatagca atgctgtata caccacttag ggccaataat gccggggatg atgtcttcac 2281 agtctcttgt cgagtcctca cgaggccatc ccctgatttt gacttcatat ttttggtgcc 2341 acctacagtt gagtcaagaa ctaagccatt cactgtccca atcttgactg ttgaagaaat 2401 gaccaattca agattcccca ttcctttgga aaaattgttc acgggtccca gcagtgcctt 2461 tgttgttcaa ccacaaaatg gcagatgcac gactgatggc gtgctcttag gcaccaccca 2521 actgtctcct gtcaacatct gcaccttcag aggggatgtc acccacattg cgggttctcg 2581 taattacaca atgaatttgg cctctctaaa ttggaacaat tatgacccaa cagaagaaat 2641 tccagcccct ctgggaactc cagatttcgt gggaaagatc caaggtgtgc tcactcaaac 2701 cacaaagggg gatggctcga cccggggcca taaagctaca gtctacactg ggagtgccga 2761 ctttactcca aagctgggca gtgttcaatt tgctactgat acagaaaatg attttgaaac 2821 tcaccaaaac acaaaattca ccccagtcgg tgtcatccag gatggtagca ccacccaccg 2881 aaatgaaccc caacaatggg tgctcccaag ttattcaggt agaaatgtcc ataatgtaca 2941 cctagcccct gctgtagccc ccaattttcc gggtgaacaa cttcttttct tcaggtccac 3001 tatgcccgga tgcagcgggt atcccaacat ggatttggat tgcctactcc cccaggagtg 3061 ggtgcagcac ttctaccaag aggcagctcc agcacaatct gatgtggctc tattgagatt 3121 tgtgaatcca gacacgggta gggtcttgtt tgagtgcaaa cttcataaat caggctatgt 3181 cacagtggct cacaccggtc aacatgattt ggtcatcccc cccaatggtt attttaggtt 3241 tgattcctgg gttaatcaat tctatacact tgcccccatg ggaaatggaa cggggcgtag 3301 acgagcttta taatggctgg agctttcttt gctggattgg catctgatgt ccttagctct 3361 ggacttggtt ccctaatcaa tgctggggct ggggctatca accaaaagat tgattttgaa 3421 aataatagaa aattgcagca agcttccttt cagtttagca gtaatctaca acaggcttcc 3481 tttcaacatg ataaagagat gctccaagca caaattgagg ccactaaaaa gttgcaacag 3541 gaaatgatga aagtcaaaca ggcaatgctc ttagaaggtg gattctctga aacagatgca 3601 gcccgtgggg caatcaacgc ccccatgaca aaggctttgg actggagcgg aacaaggtac 3661 tgggcccctg atgctaggac tacaacatac aatgcaggcc gcttttccac ccctcaacct 3721 tcgggggcac tgccaggaag aatcaatcct aggactcctg cccccgctcg gggctccccc 3781 agcatatctt ctaatgcttc tactgctact tctatatatt caaatcaaac tgtttcaacg 3841 agacttggtt ctacagctgg ttctggcacc aatgtctcgg gtctcccgtc aactgcaagg 3901 actaggagtt gggttgagga tcaaaacaga aatttgtcac ctttcatgag gggggctcac 3961 aacatatcgt ttgtcacccc accatctagc agatcctcca gccaaggcac agtctcaacc 4021 gtgcctaaag atgttttgga ctcct //