Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| KM245074 | GII.4 Den Haag | |
|
|---|---|---|---|
| GII.P4 Den Haag |
ORF1: 1..1710
ORF2: 1691..3313
ORF3: 3313..4045
LOCUS KM245074 4045 bp RNA linear VRL 01-AUG-2015
DEFINITION Norovirus 09-N-1/2009/GII.4/DenHaag/2006b nonstructural protein
gene, partial cds; major capsid protein gene, complete cds; and
minor structural protein gene, partial cds.
ACCESSION KM245074
VERSION KM245074.1
KEYWORDS .
SOURCE Norovirus 09-N-1/2009/GII.4/DenHaag/2006b
ORGANISM Norovirus 09-N-1/2009/GII.4/DenHaag/2006b
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 4045)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Norovirus GII.4 gastroenteritis outbreaks
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4045)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Direct Submission
JOURNAL Submitted (28-JUL-2014) Centers for Disease Control department of
health Taiwain, R.O.C., Center for Research and Diagnostics, No.
161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..4045
/organism="Norovirus 09-N-1/2009/GII.4/DenHaag/2006b"
/mol_type="genomic RNA"
/isolate="09-N-1/2009/GII.4 DenHaag 2006b"
/isolation_source="stool specimen from a 15-year old
female with diarrhea"
/host="Homo sapiens"
/db_xref="taxon:1631317"
/geo_loc_name="Taiwan"
/collection_date="Mar-2009"
CDS <1..1710
/note="ORF1"
/codon_start=1
/product="nonstructural protein"
/protein_id="AJZ77018.1"
/translation="TGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAARGGNT
VICATQGGEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTAPLPPGTYEP
AYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAAKKTIINVLEQTIDPP
EKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFEEGKNMTP
VYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKAHCVTLPVRV
GMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRVVLAAALEIMVKFSSEPHLAQIV
AEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQ
ANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFL
RRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSESMIPHSQRPIQLMSLLGEAAL
HGPTFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNED
GVE"
CDS 1691..3313
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AJZ77019.1"
/translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTKGDGSTRGHKATVYTGSADFTPKLGSVQFATDTENDFETHQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNVHNVHLAPAVAPNFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 3313..>4045
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="AJZ77020.1"
/translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRINPRTPAPARGSPSISS
NASTATSIYSNQTVSTRLGSTAGSGTNVSGLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKDVLDS"
ORIGIN
1 acaggatcca acgctaaaag catggatcta ggcaccacac cgggtgattg cggctgtccc
61 tacatctaca agagaggaaa cgactatgtg gtcattggag tccacacggc tgccgctcgt
121 gggggaaaca ctgtcatatg tgccacccag gggggtgagg gggaagctac acttgaaggt
181 ggtgacagta agggaacata ctgtggtgca ccaatcctag gcccagggag tgccccaaaa
241 ctcagcacca aaaccaaatt ctggagatca tccacagcac cactcccacc tggcacctat
301 gaaccagcct accttggtgg caaagacccc agagtcaagg gtggcccatc gttgcagcaa
361 gtcatgaggg accagctgaa accatttaca gagcctaggg gtaagccacc aaagccaagt
421 gtgttagaag ctgccaagaa gaccatcatc aatgtccttg aacagacaat tgacccacct
481 gagaagtggt cgttcgcaca agcttgcgcg tcccttgata agaccacttc tagcggccat
541 ccgcaccaca tgcggaaaaa cgactgctgg aacggggagt ccttcacagg caagctggca
601 gaccaggctt ccaaggccaa cctgatgttt gaagaaggga agaacatgac cccagtctac
661 acaggtgcac ttaaggatga attagtcaaa actgacaaaa tttatggtaa gatcaagaag
721 aggcttctct ggggctcgga tttggcaacc atgatccggt gtgctcgagc attcggaggt
781 ctgatggatg aactcaaagc acactgtgtc acacttcctg tcagagttgg tatgaatatg
841 aatgaggacg gccccatcat cttcgagaag cattccaggt acagatacca ctatgatgct
901 gattactctc ggtgggattc aacacaacag agagtcgtgc tggcagctgc tctagaaatc
961 atggttaaat tctcctcaga accacatttg gctcagatag tagcagaaga cctcctttct
1021 cctagcgtag tggatgtggg tgacttcaca atatcaatca acgagggtct tccctctggg
1081 gtgccctgca cctcccaatg gaactccatc gcccactggc ttctcactct ctgtgcactc
1141 tccgaagtca caaatttgtc tccagacatc atacaggcta attctctctt ctccttctat
1201 ggtgatgatg aaattgttag tacagacata aaattagacc cagagaagtt gacagcaaag
1261 cttaaggaat atgggttgaa accaacccgc cctgacaaaa ctgaagggcc tcttgttatc
1321 tctgaagact tagacggttt gactttcctg cggagaactg tgacccgcga cccagctggt
1381 tggtttggaa aactggaaca gagctcaata ctcaggcaaa tgtactggac taggggcccc
1441 aaccatgaag acccatctga atcaatgatc ccacactctc aaaggcccat acaattgatg
1501 tccttactgg gagaggccgc actccacggc ccaacattct acagtaagat cagcaaatta
1561 gtcattgcag agctgaaaga aggtggcatg gatttttacg tgcccaggca agagccaatg
1621 ttcagatgga tgagattctc ggatctgagc acgtgggagg gcgatcgcaa tctggctccc
1681 agttttgtga atgaagatgg cgtcgaatga cgccaaccca tctgatgggt ccgcagccaa
1741 cctcgtccca gaggtcaaca atgaggttat ggctttggag cccgttgtcg gtgccgctat
1801 tgcggcgcct gtagcgggcc aacaaaatgt aattgacccc tggattagaa ataattttgt
1861 acaagcccct ggtggagagt tcacagtatc ccctagaaac gctccaggtg aaatactatg
1921 gagcgcgccc ttaggtcctg atctgaatcc ctacctatct catttggcca gaatgtataa
1981 tggttatgca ggtggttttg aagtgcaggt gatcctcgcg gggaacgcgt tcaccgccgg
2041 aaaaattata tttgcagcag tcccaccaaa ttttccaact gaaggcttga gtcccagcca
2101 ggtcactatg ttcccccaca taatagtaga tgttaggcaa ttggaacctg tgttgatccc
2161 cttacctgat gttaggaata acttctatca ttataatcag tcaaatgatt ccaccattaa
2221 gttgatagca atgctgtata caccacttag ggccaataat gccggggatg atgtcttcac
2281 agtctcttgt cgagtcctca cgaggccatc ccctgatttt gacttcatat ttttggtgcc
2341 acctacagtt gagtcaagaa ctaagccatt cactgtccca atcttgactg ttgaagaaat
2401 gaccaattca agattcccca ttcctttgga aaaattgttc acgggtccca gcagtgcctt
2461 tgttgttcaa ccacaaaatg gcagatgcac gactgatggc gtgctcttag gcaccaccca
2521 actgtctcct gtcaacatct gcaccttcag aggggatgtc acccacattg cgggttctcg
2581 taattacaca atgaatttgg cctctctaaa ttggaacaat tatgacccaa cagaagaaat
2641 tccagcccct ctgggaactc cagatttcgt gggaaagatc caaggtgtgc tcactcaaac
2701 cacaaagggg gatggctcga cccggggcca taaagctaca gtctacactg ggagtgccga
2761 ctttactcca aagctgggca gtgttcaatt tgctactgat acagaaaatg attttgaaac
2821 tcaccaaaac acaaaattca ccccagtcgg tgtcatccag gatggtagca ccacccaccg
2881 aaatgaaccc caacaatggg tgctcccaag ttattcaggt agaaatgtcc ataatgtaca
2941 cctagcccct gctgtagccc ccaattttcc gggtgaacaa cttcttttct tcaggtccac
3001 tatgcccgga tgcagcgggt atcccaacat ggatttggat tgcctactcc cccaggagtg
3061 ggtgcagcac ttctaccaag aggcagctcc agcacaatct gatgtggctc tattgagatt
3121 tgtgaatcca gacacgggta gggtcttgtt tgagtgcaaa cttcataaat caggctatgt
3181 cacagtggct cacaccggtc aacatgattt ggtcatcccc cccaatggtt attttaggtt
3241 tgattcctgg gttaatcaat tctatacact tgcccccatg ggaaatggaa cggggcgtag
3301 acgagcttta taatggctgg agctttcttt gctggattgg catctgatgt ccttagctct
3361 ggacttggtt ccctaatcaa tgctggggct ggggctatca accaaaagat tgattttgaa
3421 aataatagaa aattgcagca agcttccttt cagtttagca gtaatctaca acaggcttcc
3481 tttcaacatg ataaagagat gctccaagca caaattgagg ccactaaaaa gttgcaacag
3541 gaaatgatga aagtcaaaca ggcaatgctc ttagaaggtg gattctctga aacagatgca
3601 gcccgtgggg caatcaacgc ccccatgaca aaggctttgg actggagcgg aacaaggtac
3661 tgggcccctg atgctaggac tacaacatac aatgcaggcc gcttttccac ccctcaacct
3721 tcgggggcac tgccaggaag aatcaatcct aggactcctg cccccgctcg gggctccccc
3781 agcatatctt ctaatgcttc tactgctact tctatatatt caaatcaaac tgtttcaacg
3841 agacttggtt ctacagctgg ttctggcacc aatgtctcgg gtctcccgtc aactgcaagg
3901 actaggagtt gggttgagga tcaaaacaga aatttgtcac ctttcatgag gggggctcac
3961 aacatatcgt ttgtcacccc accatctagc agatcctcca gccaaggcac agtctcaacc
4021 gtgcctaaag atgttttgga ctcct
//