Typing tool
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Typing tool
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Complete norovirus genomes
| KM245073 | GII.4 New Orleans | |
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| GII.P4 New Orleans |
ORF1: 1..1710
ORF2: 1691..3313
ORF3: 3313..4119
LOCUS KM245073 4213 bp RNA linear VRL 01-AUG-2015
DEFINITION Norovirus 09-BI-2/2009/GII.4/NewOrleans/2009 nonstructural protein
gene, partial cds; and major capsid protein and minor structural
protein genes, complete cds.
ACCESSION KM245073
VERSION KM245073.1
KEYWORDS .
SOURCE Norovirus 09-BI-2/2009/GII.4/NewOrleans/2009
ORGANISM Norovirus 09-BI-2/2009/GII.4/NewOrleans/2009
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 4213)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Norovirus GII.4 gastroenteritis outbreaks
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4213)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Direct Submission
JOURNAL Submitted (28-JUL-2014) Centers for Disease Control department of
health Taiwain, R.O.C., Center for Research and Diagnostics, No.
161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..4213
/organism="Norovirus 09-BI-2/2009/GII.4/NewOrleans/2009"
/mol_type="genomic RNA"
/isolate="09-BI-2/2009/GII.4 NewOrleans 2009"
/isolation_source="stool specimen from a 4-year old male
with diarrhea"
/host="Homo sapiens"
/db_xref="taxon:1631316"
/geo_loc_name="Taiwan"
/collection_date="Dec-2009"
CDS <1..1710
/note="ORF1"
/codon_start=1
/product="nonstructural protein"
/protein_id="AJZ77017.1"
/translation="TGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAARGGNT
VICATQGSEGEATLEGGDNKGTYCGAPILGPGSAPTLSTKTKFWRSSTASLPPGTYEP
AYLGGKDPRVKGGPSLQQVMREQLKPFTEPRGKPPKPSVLEAAKKTIINVLEQTIDPP
EKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFEEGKNMTP
VYTAALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKAHCVTLPIRV
GMNMNEDGPIIFERHSRYTYHYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVV
AEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTIQ
ANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLVTSEDLNGLTFL
RRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHGDPSETMIPHSQRPIQLMSLLGEAAL
HGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNED
GVE"
CDS 1691..3313
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AJZ77015.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHLIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIPGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTNGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG
STTPRNEPQQWVLPSYSGRNIHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 3313..4119
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="AJZ77016.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQVQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKTLDWSGTRYWAPDARTTTYNAGRFSTPQLSGAPPGRANLRATVPARGSPSTSS
NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPVFAHIRKRGESRV"
ORIGIN
1 acaggatcca acgccaagag catggacctg ggtactacac caggtgattg tggctgcccc
61 tatatctaca agagaggcaa tgactatgtg gtcattggag tccacacggc tgccgcacgt
121 gggggaaaca ctgtcatatg tgccacccag gggagtgaag gagaggctac acttgaaggt
181 ggtgacaaca aggggacata ctgtggtgca ccaatcctag gcccagggag tgccccaaca
241 cttagcacca agaccaaatt ctggagatcg tccacagcat cactcccacc tggcacctat
301 gaaccagcct atcttggtgg caaggaccct agagtcaagg gtggcccttc actgcagcaa
361 gtcatgaggg aacagttgaa gccattcaca gagccaaggg gcaagccacc aaaaccaagt
421 gtattagaag ctgccaagaa gaccatcatc aatgtccttg agcaaacaat tgatccacct
481 gagaaatggt cgttcgcaca agcttgcgcg tcccttgaca agaccacttc cagtggtcac
541 ccgcaccata tgcggaaaaa cgactgctgg aacggggagt ccttcacagg caagctggca
601 gaccaggctt ccaaggccaa cctgatgttt gaagaaggga agaacatgac cccagtctac
661 acagctgcgc tcaaggatga gttagttaaa actgacaaaa tttatggtaa gatcaagaag
721 aggcttctct ggggctcgga cttggcgacc atgatccggt gtgctcgggc attcggaggc
781 ctaatggacg aactcaaagc acactgtgtc acacttccca ttagagttgg catgaacatg
841 aatgaggatg gtcccatcat cttcgagagg cattccaggt acacatatca ctatgatgct
901 gattactctc gatgggattc aacacaacag agagccgtgt tggcagcagc tctggaaatc
961 atggttaaat tctccccaga accacatttg gctcaggtag tcgcggaaga ccttctttct
1021 cctagcgtgg tggacgtggg cgacttcaca atatcaatca acgagggtct tccctctggg
1081 gtgccctgta cctcccaatg gaactccatc gcccactggc ttctcactct ctgtgcgctc
1141 tctgaagtca caaacctatc ccctgatacc atacaggcca actccctctt ctctttttat
1201 ggtgatgatg aaattgttag cacagacata aaattggacc cagagaaatt gacagcaaag
1261 ctcagagaat atgggttaaa accaacccgc cctgacaaaa ctgaaggacc ccttgtcacc
1321 tctgaagacc tgaatggcct aactttcctg cggagaactg tgacccgcga cccagctggt
1381 tggtttggaa aactggagca gagttcaata ctcaggcaaa tgtactggac taggggtccc
1441 aaccatggag acccatctga aacaatgatt ccacactccc aaagacccat acaattgatg
1501 tccctactgg gggaggccgc tctccacggc ccagcatttt acagtaaaat cagcaaattg
1561 gtcattgcag agctaaaaga aggtggcatg gatttttacg tgcccagaca agagccaatg
1621 ttcagatgga tgagattctc agatctgagc acgtgggagg gcgatcgcaa tctggctccc
1681 agttttgtga atgaagatgg cgtcgagtga cgccaaccca tctgatgggt ccacagccaa
1741 cctcgtccca gaggtcaaca atgaggttat ggctttggag cccgtagttg gtgccgccat
1801 tgcggcacct gtagcgggcc aacaaaatgt aattgacccc tggattagga acaattttgt
1861 acaagcccct ggtggagagt ttacagtatc ccctagaaac gctccaggtg aaatactatg
1921 gagcgcgccc ttaggccctg atttgaatcc ctacctttcc catttggcca gaatgtacaa
1981 tggttatgca ggtggttttg aagtgcaggt aatcctcgcg gggaacgcgt tcaccgccgg
2041 gaaaatcata tttgcagcag tcccaccaaa ttttccaact gaaggtttga gccccagcca
2101 agtcactatg ttcccccacc taatagtaga tgttaggcaa ttggaacctg tgttgatccc
2161 cttacccgat gttaggaata atttctacca ttataatcaa tcaaatgact ccaccatcaa
2221 attgatagca atgttgtaca caccacttag ggctaataat gccggggacg atgtctttac
2281 agtttcttgt cgagttctca cgagaccatc ccccgatttt gatttcatat ttttggtgcc
2341 acccacagtt gaatcaagaa ctaaaccatt ctctgtccca gttttaactg ttgaggagat
2401 gaccaactca aggttcccca ttcctttgga aaaattgttc acgggcccca gtagtgcctt
2461 tgttgttcaa ccacaaaacg gcaggtgcac gactgatggc gtgctcctag gtactaccca
2521 actgtctcct gtcaacatct gcaccttcag aggggatgtc acccatattc caggcagtcg
2581 taactacaca atgaatttgg cctcccaaaa ttggaacagt tacgatccaa cagaagaaat
2641 cccagcccct ctaggaaccc cagatttcgt ggggaagatt caaggtgtgc tcacccaaac
2701 cacaaggaca aatggctcga cccgcggcca caaagctaca gtgtacactg ggagcgccga
2761 cttttctcca aaactgggta gagttcaatt tgccactgac acagacaatg attttgaaac
2821 taaccaaaac acaaagttca ccccagtcgg tgttatccag gatggtagta ctaccccccg
2881 aaatgaaccc caacaatggg tgctcccaag ttactcaggc agaaacattc acaatgtgca
2941 cctggccccc gctgtagccc ccactttccc gggcgagcag cttctcttct tcagatctac
3001 tatgcccgga tgcagcgggt accccaacat ggacttggac tgtctgctcc cccaggaatg
3061 ggtgcagtac ttctaccagg aggcagcccc agcacaatct gatgtggctc tgctaagatt
3121 tgtgaatcca gacacaggta gggttttgtt tgagtgtaag cttcataaat caggctatgt
3181 tacagtggct cacactggcc aacatgattt ggttatcccc cccaatggtt attttagatt
3241 tgattcctgg gtcaaccagt tctacacact tgcccccatg ggaaatggga cggggcgtag
3301 acgtgcatta taatggctgg agctttcttt gctggattgg catctgacgt ccttggctct
3361 ggacttggtt ccctaatcaa tgctggggct ggggccatca accaaaaagt tgaatttgaa
3421 aataacagaa aattgcaaca agcttccttc caatttagta gcaatctaca acaggcttcc
3481 tttcaacatg acaaagagat gctccaagta caaattgagg ccaccaaaaa gttgcaacag
3541 gaaatgatga gagttaaaca agcaatgctc ctagagggtg gattctctga gacagatgca
3601 gcccgtgggg caatcaacgc ccccatgaca aaaactttgg actggagcgg gacgaggtac
3661 tgggctcccg atgctaggac tacaacatat aatgcaggcc gcttttccac ccctcaactc
3721 tcgggggcac caccaggaag agctaatctt agggctactg tccccgctcg gggttcccct
3781 agcacgtctt ctaactcttc tattgctact tctgtgtatt caaatcaaac cacctcaacg
3841 agacttggtt ctacagctgg ttctggtacc agtgtctcga gcctcccgtc aactgcaagg
3901 actaggagct gggttgagga tcaaaatagg aatttgtcac ctttcatgag gggggcccac
3961 aacatctcgt ttgtcacccc accatctagc agatcctcta gccaaggcac agtctcgacc
4021 gtgcccaaag aagttttgga ctcctggact ggcgctttca acacgcgcag gcagcctgtg
4081 ttcgctcaca ttcgcaagcg aggggagtca cgggtgtaat gtgaaaagac aaaattgatt
4141 atctttcttt tctttagtgt cttttaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
4201 aaaaaaaaaa aaa
//