Typing tool
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Complete norovirus genomes
KM245073 | GII.4 New Orleans | ||
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GII.P4 New Orleans |
ORF1: 1..1710 ORF2: 1691..3313 ORF3: 3313..4119LOCUS KM245073 4213 bp RNA linear VRL 01-AUG-2015 DEFINITION Norovirus 09-BI-2/2009/GII.4/NewOrleans/2009 nonstructural protein gene, partial cds; and major capsid protein and minor structural protein genes, complete cds. ACCESSION KM245073 VERSION KM245073.1 KEYWORDS . SOURCE Norovirus 09-BI-2/2009/GII.4/NewOrleans/2009 ORGANISM Norovirus 09-BI-2/2009/GII.4/NewOrleans/2009 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 4213) AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T. TITLE Norovirus GII.4 gastroenteritis outbreaks JOURNAL Unpublished REFERENCE 2 (bases 1 to 4213) AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T. TITLE Direct Submission JOURNAL Submitted (28-JUL-2014) Centers for Disease Control department of health Taiwain, R.O.C., Center for Research and Diagnostics, No. 161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C. FEATURES Location/Qualifiers source 1..4213 /organism="Norovirus 09-BI-2/2009/GII.4/NewOrleans/2009" /mol_type="genomic RNA" /isolate="09-BI-2/2009/GII.4 NewOrleans 2009" /isolation_source="stool specimen from a 4-year old male with diarrhea" /host="Homo sapiens" /db_xref="taxon:1631316" /country="Taiwan" /collection_date="Dec-2009" CDS <1..1710 /note="ORF1" /codon_start=1 /product="nonstructural protein" /protein_id="AJZ77017.1" /translation="TGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAARGGNT VICATQGSEGEATLEGGDNKGTYCGAPILGPGSAPTLSTKTKFWRSSTASLPPGTYEP AYLGGKDPRVKGGPSLQQVMREQLKPFTEPRGKPPKPSVLEAAKKTIINVLEQTIDPP EKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFEEGKNMTP VYTAALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKAHCVTLPIRV GMNMNEDGPIIFERHSRYTYHYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVV AEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTIQ ANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLVTSEDLNGLTFL RRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHGDPSETMIPHSQRPIQLMSLLGEAAL HGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNED GVE" CDS 1691..3313 /note="VP1" /codon_start=1 /product="major capsid protein" /protein_id="AJZ77015.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHLIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIPGSRNYTMNLASQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRTNGSTRGHKATVYTGSADFSPKLGRVQFATDTDNDFETNQNTKFTPVGVIQDG STTPRNEPQQWVLPSYSGRNIHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 3313..4119 /note="VP2" /codon_start=1 /product="minor structural protein" /protein_id="AJZ77016.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQVQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKTLDWSGTRYWAPDARTTTYNAGRFSTPQLSGAPPGRANLRATVPARGSPSTSS NSSIATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPVFAHIRKRGESRV" ORIGIN 1 acaggatcca acgccaagag catggacctg ggtactacac caggtgattg tggctgcccc 61 tatatctaca agagaggcaa tgactatgtg gtcattggag tccacacggc tgccgcacgt 121 gggggaaaca ctgtcatatg tgccacccag gggagtgaag gagaggctac acttgaaggt 181 ggtgacaaca aggggacata ctgtggtgca ccaatcctag gcccagggag tgccccaaca 241 cttagcacca agaccaaatt ctggagatcg tccacagcat cactcccacc tggcacctat 301 gaaccagcct atcttggtgg caaggaccct agagtcaagg gtggcccttc actgcagcaa 361 gtcatgaggg aacagttgaa gccattcaca gagccaaggg gcaagccacc aaaaccaagt 421 gtattagaag ctgccaagaa gaccatcatc aatgtccttg agcaaacaat tgatccacct 481 gagaaatggt cgttcgcaca agcttgcgcg tcccttgaca agaccacttc cagtggtcac 541 ccgcaccata tgcggaaaaa cgactgctgg aacggggagt ccttcacagg caagctggca 601 gaccaggctt ccaaggccaa cctgatgttt gaagaaggga agaacatgac cccagtctac 661 acagctgcgc tcaaggatga gttagttaaa actgacaaaa tttatggtaa gatcaagaag 721 aggcttctct ggggctcgga cttggcgacc atgatccggt gtgctcgggc attcggaggc 781 ctaatggacg aactcaaagc acactgtgtc acacttccca ttagagttgg catgaacatg 841 aatgaggatg gtcccatcat cttcgagagg cattccaggt acacatatca ctatgatgct 901 gattactctc gatgggattc aacacaacag agagccgtgt tggcagcagc tctggaaatc 961 atggttaaat tctccccaga accacatttg gctcaggtag tcgcggaaga ccttctttct 1021 cctagcgtgg tggacgtggg cgacttcaca atatcaatca acgagggtct tccctctggg 1081 gtgccctgta cctcccaatg gaactccatc gcccactggc ttctcactct ctgtgcgctc 1141 tctgaagtca caaacctatc ccctgatacc atacaggcca actccctctt ctctttttat 1201 ggtgatgatg aaattgttag cacagacata aaattggacc cagagaaatt gacagcaaag 1261 ctcagagaat atgggttaaa accaacccgc cctgacaaaa ctgaaggacc ccttgtcacc 1321 tctgaagacc tgaatggcct aactttcctg cggagaactg tgacccgcga cccagctggt 1381 tggtttggaa aactggagca gagttcaata ctcaggcaaa tgtactggac taggggtccc 1441 aaccatggag acccatctga aacaatgatt ccacactccc aaagacccat acaattgatg 1501 tccctactgg gggaggccgc tctccacggc ccagcatttt acagtaaaat cagcaaattg 1561 gtcattgcag agctaaaaga aggtggcatg gatttttacg tgcccagaca agagccaatg 1621 ttcagatgga tgagattctc agatctgagc acgtgggagg gcgatcgcaa tctggctccc 1681 agttttgtga atgaagatgg cgtcgagtga cgccaaccca tctgatgggt ccacagccaa 1741 cctcgtccca gaggtcaaca atgaggttat ggctttggag cccgtagttg gtgccgccat 1801 tgcggcacct gtagcgggcc aacaaaatgt aattgacccc tggattagga acaattttgt 1861 acaagcccct ggtggagagt ttacagtatc ccctagaaac gctccaggtg aaatactatg 1921 gagcgcgccc ttaggccctg atttgaatcc ctacctttcc catttggcca gaatgtacaa 1981 tggttatgca ggtggttttg aagtgcaggt aatcctcgcg gggaacgcgt tcaccgccgg 2041 gaaaatcata tttgcagcag tcccaccaaa ttttccaact gaaggtttga gccccagcca 2101 agtcactatg ttcccccacc taatagtaga tgttaggcaa ttggaacctg tgttgatccc 2161 cttacccgat gttaggaata atttctacca ttataatcaa tcaaatgact ccaccatcaa 2221 attgatagca atgttgtaca caccacttag ggctaataat gccggggacg atgtctttac 2281 agtttcttgt cgagttctca cgagaccatc ccccgatttt gatttcatat ttttggtgcc 2341 acccacagtt gaatcaagaa ctaaaccatt ctctgtccca gttttaactg ttgaggagat 2401 gaccaactca aggttcccca ttcctttgga aaaattgttc acgggcccca gtagtgcctt 2461 tgttgttcaa ccacaaaacg gcaggtgcac gactgatggc gtgctcctag gtactaccca 2521 actgtctcct gtcaacatct gcaccttcag aggggatgtc acccatattc caggcagtcg 2581 taactacaca atgaatttgg cctcccaaaa ttggaacagt tacgatccaa cagaagaaat 2641 cccagcccct ctaggaaccc cagatttcgt ggggaagatt caaggtgtgc tcacccaaac 2701 cacaaggaca aatggctcga cccgcggcca caaagctaca gtgtacactg ggagcgccga 2761 cttttctcca aaactgggta gagttcaatt tgccactgac acagacaatg attttgaaac 2821 taaccaaaac acaaagttca ccccagtcgg tgttatccag gatggtagta ctaccccccg 2881 aaatgaaccc caacaatggg tgctcccaag ttactcaggc agaaacattc acaatgtgca 2941 cctggccccc gctgtagccc ccactttccc gggcgagcag cttctcttct tcagatctac 3001 tatgcccgga tgcagcgggt accccaacat ggacttggac tgtctgctcc cccaggaatg 3061 ggtgcagtac ttctaccagg aggcagcccc agcacaatct gatgtggctc tgctaagatt 3121 tgtgaatcca gacacaggta gggttttgtt tgagtgtaag cttcataaat caggctatgt 3181 tacagtggct cacactggcc aacatgattt ggttatcccc cccaatggtt attttagatt 3241 tgattcctgg gtcaaccagt tctacacact tgcccccatg ggaaatggga cggggcgtag 3301 acgtgcatta taatggctgg agctttcttt gctggattgg catctgacgt ccttggctct 3361 ggacttggtt ccctaatcaa tgctggggct ggggccatca accaaaaagt tgaatttgaa 3421 aataacagaa aattgcaaca agcttccttc caatttagta gcaatctaca acaggcttcc 3481 tttcaacatg acaaagagat gctccaagta caaattgagg ccaccaaaaa gttgcaacag 3541 gaaatgatga gagttaaaca agcaatgctc ctagagggtg gattctctga gacagatgca 3601 gcccgtgggg caatcaacgc ccccatgaca aaaactttgg actggagcgg gacgaggtac 3661 tgggctcccg atgctaggac tacaacatat aatgcaggcc gcttttccac ccctcaactc 3721 tcgggggcac caccaggaag agctaatctt agggctactg tccccgctcg gggttcccct 3781 agcacgtctt ctaactcttc tattgctact tctgtgtatt caaatcaaac cacctcaacg 3841 agacttggtt ctacagctgg ttctggtacc agtgtctcga gcctcccgtc aactgcaagg 3901 actaggagct gggttgagga tcaaaatagg aatttgtcac ctttcatgag gggggcccac 3961 aacatctcgt ttgtcacccc accatctagc agatcctcta gccaaggcac agtctcgacc 4021 gtgcccaaag aagttttgga ctcctggact ggcgctttca acacgcgcag gcagcctgtg 4081 ttcgctcaca ttcgcaagcg aggggagtca cgggtgtaat gtgaaaagac aaaattgatt 4141 atctttcttt tctttagtgt cttttaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 4201 aaaaaaaaaa aaa //