Typing tool
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Typing tool
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Complete norovirus genomes
| KM245072 | GII.4 Apeldoorn | |
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| GII.P4 Apeldoorn |
ORF1: 1..1710
ORF2: 1691..3313
ORF3: 3313..4119
LOCUS KM245072 4216 bp RNA linear VRL 01-AUG-2015
DEFINITION Norovirus 08-W-1/2008/GII.4/Apeldoorn/2007 nonstructural protein
gene, partial cds; and major capsid protein and minor structural
protein genes, complete cds.
ACCESSION KM245072
VERSION KM245072.1
KEYWORDS .
SOURCE Norovirus 08-W-1/2008/GII.4/Apeldoorn/2007
ORGANISM Norovirus 08-W-1/2008/GII.4/Apeldoorn/2007
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 4216)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Norovirus GII.4 gastroenteritis outbreaks
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4216)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Direct Submission
JOURNAL Submitted (28-JUL-2014) Centers for Disease Control department of
health Taiwain, R.O.C., Center for Research and Diagnostics, No.
161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..4216
/organism="Norovirus 08-W-1/2008/GII.4/Apeldoorn/2007"
/mol_type="genomic RNA"
/isolate="08-W-1/2008/GII.4 Apeldoorn 2007"
/isolation_source="stool specimen from a 50-year old male
with diarrhea"
/host="Homo sapiens"
/db_xref="taxon:1631314"
/geo_loc_name="Taiwan"
/collection_date="Mar-2008"
CDS <1..1710
/note="ORF1"
/codon_start=1
/product="nonstructural protein"
/protein_id="AJZ77012.1"
/translation="TGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAARGGNT
VICATQGSEGEATLEGGDNKGTYCGAPILGPGSAPKLSTKTKFWRSSTAPLPPGTYEP
AYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAAKKTIINVLEQTIDPP
EKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFEEGKNMTP
VYTAALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKAHCVTLPIRV
GMNMNEDGPIIFERHSRYTYHYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVV
AEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTIQ
ANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLAISEDLNGLTFL
RRTVTRDPAGWFGKLEQSSILRQMYWTRGSNHEDPSETMIPHSQRPIQLMSLLGEAAL
HGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNED
GVE"
CDS 1691..3313
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AJZ77013.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRSNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLATQNWNSYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRADGSTRGHKATVYTGSADFAPKLGRVQFATDTDNDFDANQNTKFTPVGVIQDG
DTAHRNEPQQWVLPSYSGRNSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 3313..4119
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="AJZ77014.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRAKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGHFSTPQPSGALPGRANLRAAVPARGSSSTSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARARSWVEDQNRSLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 acaggatcca acgccaaaag catggatctg ggtaccacac caggtgattg tggctgtccc
61 tacatctaca agagaggaaa tgactatgtg gtcattggag tccacacggc tgccgctcgt
121 gggggcaaca ctgtcatatg tgccacccag gggagtgagg gagaggctac acttgaaggt
181 ggtgacaata aagggacata ctgtggtgca ccaatcctag gcccagggag tgccccaaaa
241 cttagcacca aaaccaaatt ctggagatcg tccacagcac cactcccacc tggcacctat
301 gaaccagcct atcttggtgg taaggacccc agagtcaagg gtggcccttc actgcagcag
361 gtcatgaggg atcagctgaa gccattcaca gagcccaggg gcaagccacc aaagccaagt
421 gtgttggaag ctgctaagaa aaccatcatc aatgtccttg aacaaacaat tgatccacct
481 gagaaatggt cgttcgcaca agcttgcgcg tcccttgaca agaccacctc cagtggccat
541 ccgcatcaca tgcggaaaaa cgactgctgg aacggggagt ccttcacagg caagctggca
601 gaccaggctt ccaaggccaa cctgatgttt gaagaaggga agaacatgac gccagtctat
661 acagctgcgc tcaaggacga attagttaaa actgacaaaa tttatggcaa gatcaagaag
721 aggcttctct ggggctcgga tttggcgacc atgatccggt gtgctcgagc attcggaggc
781 ctaatggatg aactcaaagc gcactgtgtc acacttccca tcagagttgg tatgaatatg
841 aatgaggatg gccccatcat cttcgagagg cactctaggt acacatacca ctatgatgct
901 gattactctc gatgggattc aacacaacag agagccgtgt tggcagcagc tctagaaatc
961 atggttaagt tctccccaga accacatttg gcccaggtag tcgcagaaga ccttctttct
1021 cctagcgtgg tggacgtggg tgacttcaca atatcaatta acgagggtct tccctctggg
1081 gtgccctgca cctcccaatg gaactccatc gcccactggc ttctcaccct ctgtgcgctc
1141 tctgaagtta caaacttgtc tcctgacacc atacaagcta attccctctt ctctttttat
1201 ggtgatgatg aaattgttag cacagacata aaattggacc cagaaaagtt gacagcaaag
1261 ctcagggaat atgggttaaa gccaacccgc cccgacaaaa ctgaaggacc ccttgccatc
1321 tctgaagact tgaatggcct gactttcctg cggagaactg tgacccgcga cccagctggt
1381 tggtttggaa aactggagca gagttcaata ctcaggcaaa tgtactggac taggggttcc
1441 aaccatgaag acccatctga aacaatgatt ccacactccc aaagacccat acaactgatg
1501 tccctactgg gggaggccgc actccacggc ccagcattct acagcaaaat cagcaagtta
1561 gtcattgcag agctaaaaga aggtggcatg gatttttacg tgcccagaca agagccaatg
1621 ttcagatgga tgagattctc agatctgagc acgtgggagg gcgatcgcaa tctggctccc
1681 agttttgtga atgaagatgg cgtcgagtga cgccaaccca tctgatgggt ccacagccaa
1741 cctcgtccca gaggtcaaca atgaggttat ggctttggag cccgttgttg gtgccgccat
1801 tgcggcacct gtagcgggcc aacaaaatgt aattgacccc tggattagaa gcaattttgt
1861 acaagcccct ggtggagagt tcacagtatc ccctagaaac gctccaggtg aaatactatg
1921 gagcgcgccc ttaggccctg atttgaatcc ctacctttcc catttggcca gaatgtacaa
1981 tggttatgca ggtggttttg aagtgcaggt aatcctcgcg gggaacgcgt tcaccgccgg
2041 aaaaatcata tttgcagcag tcccaccaaa tttcccaact gaaggcttga gccccagcca
2101 ggtcactatg ttcccccaca taatagtaga tgttaggcaa ttggaacctg tgttgatccc
2161 cttacccgat gttaggaata atttctatca ctacaatcaa tcaaatgacc ccaccatcaa
2221 attgatagca atgttgtata caccacttag ggctaataat gctggagacg atgtcttcac
2281 agtttcttgt cgggttctca cgagaccatc ccccgacttt gatttcatat ttttagtacc
2341 acccacagtt gagtcaagaa ctaaaccatt ctctgtccca attttaactg ttgaggagat
2401 gaccaattca agattcccca ttcctttgga aaagctgttc acgggtccca gcagtgcctt
2461 tgttgttcaa ccacaaaacg gcaggtgcac gactgatggc gtgctcctag gcaccactca
2521 actgtctcct gtcaacatct gcaccttcag aggggatgtc acccatatta caggtagtcg
2581 taactacaca atgaatttgg ctactcaaaa ttggaacagt tatgacccaa cagaagaaat
2641 cccagcccct ctaggaactc cagatttcgt ggggaagatt caaggtgtgc tcacccaaac
2701 cacaagggca gatggctcga cccgcggcca taaagctaca gtgtacactg ggagcgccga
2761 ttttgctcca aaactgggta gagttcaatt tgccactgac acagacaatg attttgatgc
2821 taaccaaaac acaaagttca ccccagtcgg tgtcatccag gatggtgata ctgcccaccg
2881 aaatgaaccc caacaatggg tgctcccaag ttactcaggc agaaatagtc ataatgtgca
2941 cctggccccc gctgtagccc ccacttttcc gggtgagcaa cttctcttct tcagatccac
3001 tatgcccgga tgcagcgggt accccaacat ggatttggac tgtctgctcc cccaggaatg
3061 ggtgcagtat ttctatcaag aggcagcccc agcacaatct gatgtggctc tgctaagatt
3121 tgtgaatcca gacacaggta gggttttgtt tgagtgcaag cttcataaat caggctatgt
3181 tacagtggct cacaccggcc aacatgattt ggttatcccc cccaatggtt attttagatt
3241 tgattcctgg gtcaaccagt tctacacact tgcccccatg ggaaatggaa cggggcgtag
3301 acgtgcatta taatggctgg agctttcttt gctggattgg catctgacgt ccttggctcc
3361 ggacttggtt ctctgatcaa tgccggggct ggggccatca accaaaaagt tgaatttgaa
3421 aataacagaa aattgcaaca agcttccttc caatttagca gcaatctaca acaggcttcc
3481 tttcaacatg ataaagagat gctccaagca caaattgagg ccaccaaaaa gttgcaacag
3541 gaaatgatga gagctaaaca ggcaatgctc ctagagggtg gattctctga gacagatgca
3601 gcccgtgggg caatcaacgc ccccatgaca aaggctttgg actggagtgg gacaaggtac
3661 tgggctcccg atgctaggac tacaacatac aatgcaggcc acttttccac ccctcaaccc
3721 tcgggggcac tgccagggag agctaatctt agggctgctg tccccgctcg gggctcctcc
3781 agcacatctt ctaactcttc cactgctact tctgtatact caaatcaaac tacttcaacg
3841 agacttggtt ctacagctgg ttctggtacc agtgtctcga gcctcccgtc aactgcaagg
3901 gctaggagct gggttgagga tcaaaatagg agtttgtcac ctttcatgag gggggcccac
3961 aacatatcgt ttgtcacccc accatctagc agatcctcta gccaaggcac agtctcaacc
4021 gtgcccaaag aagttttgga ctcctggact ggcgctttca atacgcgcag gcagcctctc
4081 ttcgctcaca ttcgtaagcg aggggagtca cgggcgtaat gtgaaaagac aaaattgatt
4141 atctttcttt tctttagtgt cttttaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
4201 aaaaaaaaaa aaaaaa
//