Typing tool
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Complete norovirus genomes
KM245072 | GII.4 New Orleans | ||
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GII.P4 Hunter |
ORF1: 1..1710 ORF2: 1691..3313 ORF3: 3313..4119LOCUS KM245072 4216 bp RNA linear VRL 01-AUG-2015 DEFINITION Norovirus 08-W-1/2008/GII.4/Apeldoorn/2007 nonstructural protein gene, partial cds; and major capsid protein and minor structural protein genes, complete cds. ACCESSION KM245072 VERSION KM245072.1 KEYWORDS . SOURCE Norovirus 08-W-1/2008/GII.4/Apeldoorn/2007 ORGANISM Norovirus 08-W-1/2008/GII.4/Apeldoorn/2007 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 4216) AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T. TITLE Norovirus GII.4 gastroenteritis outbreaks JOURNAL Unpublished REFERENCE 2 (bases 1 to 4216) AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T. TITLE Direct Submission JOURNAL Submitted (28-JUL-2014) Centers for Disease Control department of health Taiwain, R.O.C., Center for Research and Diagnostics, No. 161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C. FEATURES Location/Qualifiers source 1..4216 /organism="Norovirus 08-W-1/2008/GII.4/Apeldoorn/2007" /mol_type="genomic RNA" /isolate="08-W-1/2008/GII.4 Apeldoorn 2007" /isolation_source="stool specimen from a 50-year old male with diarrhea" /host="Homo sapiens" /db_xref="taxon:1631314" /country="Taiwan" /collection_date="Mar-2008" CDS <1..1710 /note="ORF1" /codon_start=1 /product="nonstructural protein" /protein_id="AJZ77012.1" /translation="TGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAARGGNT VICATQGSEGEATLEGGDNKGTYCGAPILGPGSAPKLSTKTKFWRSSTAPLPPGTYEP AYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAAKKTIINVLEQTIDPP EKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFEEGKNMTP VYTAALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKAHCVTLPIRV GMNMNEDGPIIFERHSRYTYHYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVV AEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTIQ ANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLAISEDLNGLTFL RRTVTRDPAGWFGKLEQSSILRQMYWTRGSNHEDPSETMIPHSQRPIQLMSLLGEAAL HGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNED GVE" CDS 1691..3313 /note="VP1" /codon_start=1 /product="major capsid protein" /protein_id="AJZ77013.1" /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRSNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSRNYTMNLATQNWNSYDPTEEIPAPLGTPDFVGKIQGVL TQTTRADGSTRGHKATVYTGSADFAPKLGRVQFATDTDNDFDANQNTKFTPVGVIQDG DTAHRNEPQQWVLPSYSGRNSHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 3313..4119 /note="VP2" /codon_start=1 /product="minor structural protein" /protein_id="AJZ77014.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRAKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGHFSTPQPSGALPGRANLRAAVPARGSSSTSS NSSTATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARARSWVEDQNRSLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA" ORIGIN 1 acaggatcca acgccaaaag catggatctg ggtaccacac caggtgattg tggctgtccc 61 tacatctaca agagaggaaa tgactatgtg gtcattggag tccacacggc tgccgctcgt 121 gggggcaaca ctgtcatatg tgccacccag gggagtgagg gagaggctac acttgaaggt 181 ggtgacaata aagggacata ctgtggtgca ccaatcctag gcccagggag tgccccaaaa 241 cttagcacca aaaccaaatt ctggagatcg tccacagcac cactcccacc tggcacctat 301 gaaccagcct atcttggtgg taaggacccc agagtcaagg gtggcccttc actgcagcag 361 gtcatgaggg atcagctgaa gccattcaca gagcccaggg gcaagccacc aaagccaagt 421 gtgttggaag ctgctaagaa aaccatcatc aatgtccttg aacaaacaat tgatccacct 481 gagaaatggt cgttcgcaca agcttgcgcg tcccttgaca agaccacctc cagtggccat 541 ccgcatcaca tgcggaaaaa cgactgctgg aacggggagt ccttcacagg caagctggca 601 gaccaggctt ccaaggccaa cctgatgttt gaagaaggga agaacatgac gccagtctat 661 acagctgcgc tcaaggacga attagttaaa actgacaaaa tttatggcaa gatcaagaag 721 aggcttctct ggggctcgga tttggcgacc atgatccggt gtgctcgagc attcggaggc 781 ctaatggatg aactcaaagc gcactgtgtc acacttccca tcagagttgg tatgaatatg 841 aatgaggatg gccccatcat cttcgagagg cactctaggt acacatacca ctatgatgct 901 gattactctc gatgggattc aacacaacag agagccgtgt tggcagcagc tctagaaatc 961 atggttaagt tctccccaga accacatttg gcccaggtag tcgcagaaga ccttctttct 1021 cctagcgtgg tggacgtggg tgacttcaca atatcaatta acgagggtct tccctctggg 1081 gtgccctgca cctcccaatg gaactccatc gcccactggc ttctcaccct ctgtgcgctc 1141 tctgaagtta caaacttgtc tcctgacacc atacaagcta attccctctt ctctttttat 1201 ggtgatgatg aaattgttag cacagacata aaattggacc cagaaaagtt gacagcaaag 1261 ctcagggaat atgggttaaa gccaacccgc cccgacaaaa ctgaaggacc ccttgccatc 1321 tctgaagact tgaatggcct gactttcctg cggagaactg tgacccgcga cccagctggt 1381 tggtttggaa aactggagca gagttcaata ctcaggcaaa tgtactggac taggggttcc 1441 aaccatgaag acccatctga aacaatgatt ccacactccc aaagacccat acaactgatg 1501 tccctactgg gggaggccgc actccacggc ccagcattct acagcaaaat cagcaagtta 1561 gtcattgcag agctaaaaga aggtggcatg gatttttacg tgcccagaca agagccaatg 1621 ttcagatgga tgagattctc agatctgagc acgtgggagg gcgatcgcaa tctggctccc 1681 agttttgtga atgaagatgg cgtcgagtga cgccaaccca tctgatgggt ccacagccaa 1741 cctcgtccca gaggtcaaca atgaggttat ggctttggag cccgttgttg gtgccgccat 1801 tgcggcacct gtagcgggcc aacaaaatgt aattgacccc tggattagaa gcaattttgt 1861 acaagcccct ggtggagagt tcacagtatc ccctagaaac gctccaggtg aaatactatg 1921 gagcgcgccc ttaggccctg atttgaatcc ctacctttcc catttggcca gaatgtacaa 1981 tggttatgca ggtggttttg aagtgcaggt aatcctcgcg gggaacgcgt tcaccgccgg 2041 aaaaatcata tttgcagcag tcccaccaaa tttcccaact gaaggcttga gccccagcca 2101 ggtcactatg ttcccccaca taatagtaga tgttaggcaa ttggaacctg tgttgatccc 2161 cttacccgat gttaggaata atttctatca ctacaatcaa tcaaatgacc ccaccatcaa 2221 attgatagca atgttgtata caccacttag ggctaataat gctggagacg atgtcttcac 2281 agtttcttgt cgggttctca cgagaccatc ccccgacttt gatttcatat ttttagtacc 2341 acccacagtt gagtcaagaa ctaaaccatt ctctgtccca attttaactg ttgaggagat 2401 gaccaattca agattcccca ttcctttgga aaagctgttc acgggtccca gcagtgcctt 2461 tgttgttcaa ccacaaaacg gcaggtgcac gactgatggc gtgctcctag gcaccactca 2521 actgtctcct gtcaacatct gcaccttcag aggggatgtc acccatatta caggtagtcg 2581 taactacaca atgaatttgg ctactcaaaa ttggaacagt tatgacccaa cagaagaaat 2641 cccagcccct ctaggaactc cagatttcgt ggggaagatt caaggtgtgc tcacccaaac 2701 cacaagggca gatggctcga cccgcggcca taaagctaca gtgtacactg ggagcgccga 2761 ttttgctcca aaactgggta gagttcaatt tgccactgac acagacaatg attttgatgc 2821 taaccaaaac acaaagttca ccccagtcgg tgtcatccag gatggtgata ctgcccaccg 2881 aaatgaaccc caacaatggg tgctcccaag ttactcaggc agaaatagtc ataatgtgca 2941 cctggccccc gctgtagccc ccacttttcc gggtgagcaa cttctcttct tcagatccac 3001 tatgcccgga tgcagcgggt accccaacat ggatttggac tgtctgctcc cccaggaatg 3061 ggtgcagtat ttctatcaag aggcagcccc agcacaatct gatgtggctc tgctaagatt 3121 tgtgaatcca gacacaggta gggttttgtt tgagtgcaag cttcataaat caggctatgt 3181 tacagtggct cacaccggcc aacatgattt ggttatcccc cccaatggtt attttagatt 3241 tgattcctgg gtcaaccagt tctacacact tgcccccatg ggaaatggaa cggggcgtag 3301 acgtgcatta taatggctgg agctttcttt gctggattgg catctgacgt ccttggctcc 3361 ggacttggtt ctctgatcaa tgccggggct ggggccatca accaaaaagt tgaatttgaa 3421 aataacagaa aattgcaaca agcttccttc caatttagca gcaatctaca acaggcttcc 3481 tttcaacatg ataaagagat gctccaagca caaattgagg ccaccaaaaa gttgcaacag 3541 gaaatgatga gagctaaaca ggcaatgctc ctagagggtg gattctctga gacagatgca 3601 gcccgtgggg caatcaacgc ccccatgaca aaggctttgg actggagtgg gacaaggtac 3661 tgggctcccg atgctaggac tacaacatac aatgcaggcc acttttccac ccctcaaccc 3721 tcgggggcac tgccagggag agctaatctt agggctgctg tccccgctcg gggctcctcc 3781 agcacatctt ctaactcttc cactgctact tctgtatact caaatcaaac tacttcaacg 3841 agacttggtt ctacagctgg ttctggtacc agtgtctcga gcctcccgtc aactgcaagg 3901 gctaggagct gggttgagga tcaaaatagg agtttgtcac ctttcatgag gggggcccac 3961 aacatatcgt ttgtcacccc accatctagc agatcctcta gccaaggcac agtctcaacc 4021 gtgcccaaag aagttttgga ctcctggact ggcgctttca atacgcgcag gcagcctctc 4081 ttcgctcaca ttcgtaagcg aggggagtca cgggcgtaat gtgaaaagac aaaattgatt 4141 atctttcttt tctttagtgt cttttaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 4201 aaaaaaaaaa aaaaaa //