Typing tool
|
Complete norovirus genomes
KM245071 | GII.4 Den Haag | ||
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GII.P4 Den Haag |
ORF1: 1..1710 ORF2: 1691..3313 ORF3: 3313..4119LOCUS KM245071 4230 bp RNA linear VRL 01-AUG-2015 DEFINITION Norovirus 08-F-2/2008/GII.4/DenHaag/2006b nonstructural protein gene, partial cds; and major capsid protein and minor structural protein genes, complete cds. ACCESSION KM245071 VERSION KM245071.1 KEYWORDS . SOURCE Norovirus 08-F-2/2008/GII.4/DenHaag/2006b ORGANISM Norovirus 08-F-2/2008/GII.4/DenHaag/2006b Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 4230) AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T. TITLE Norovirus GII.4 gastroenteritis outbreaks JOURNAL Unpublished REFERENCE 2 (bases 1 to 4230) AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T. TITLE Direct Submission JOURNAL Submitted (28-JUL-2014) Centers for Disease Control department of health Taiwain, R.O.C., Center for Research and Diagnostics, No. 161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C. FEATURES Location/Qualifiers source 1..4230 /organism="Norovirus 08-F-2/2008/GII.4/DenHaag/2006b" /mol_type="genomic RNA" /isolate="08-F-2/2008/GII.4 DenHaag 2006b" /isolation_source="stool specimen from a 59-year old female with diarrhea" /host="Homo sapiens" /db_xref="taxon:1631313" /country="Taiwan" /collection_date="Jan-2008" CDS <1..1710 /note="ORF1" /codon_start=1 /product="nonstructural protein" /protein_id="AJZ77009.1" /translation="TGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAARGGNT VICATQGGEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTVPLPPGTYEP AYLGGKDPRVKGGPSLQQVMREQLKPFTEPRGKPPKPSVLEAAKKTIINVLEQTIDPP EKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFEEGKNMTP VYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKAHCVTLPIRV GMNMNEDGPIIFEKHSRFRYHYDADYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVV AEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQ ANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFL RRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSESMIPHSQRPIQLMSLLGEAAL HGPTFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNED GVE" CDS 1691..3313 /note="VP1" /codon_start=1 /product="major capsid protein" /protein_id="AJZ77010.1" /translation="MKMASNDASPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSGAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGSRNYTMNLAALNWNNYDPTEEIPAPLGTPDFVGKIQGVL TQTTKADGSTRGHKATVYTGSADFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG STTHRNEPQQWVLPSYSGRNVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 3313..4119 /note="VP2" /codon_start=1 /product="minor structural protein" /protein_id="AJZ77011.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKIDFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARITTYNAGRFSSPQPSGALPGRINPRAPTPARGSSSTSS NASTATSIYSNQTASTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHDI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV" ORIGIN 1 acaggatcca acgccaaaag catggatcta ggcaccacac caggtgattg cggctgtccc 61 tacatctaca agagaggaaa tgactatgtg gtcattggag tccacacggc tgccgctcgt 121 ggtggaaaca ctgtcatatg tgccacccag gggggtgagg gggaagctac acttgaaggt 181 ggtgacagta agggaacata ctgtggtgca ccaatcctag gcccagggag cgccccaaaa 241 cttagcacca aaaccaaatt ctggaggtcg tccacagtac cgctcccacc tggcacctat 301 gaaccagcct accttggtgg caaggacccc agagtcaagg gtggcccctc gttgcagcaa 361 gtcatgagag aacagctgaa accatttaca gagcccaggg gtaagccacc aaagccaagt 421 gtgttagaag ctgccaagaa aaccatcatc aatgtccttg aacaaacaat tgacccacct 481 gagaagtggt cgttcgcaca agcttgcgcg tcccttgaca agaccacttc tagcggccat 541 ccgcaccaca tgcggaaaaa cgactgctgg aacggggagt ccttcacagg caagctggca 601 gaccaggctt ccaaggccaa cctgatgttt gaagaaggga agaacatgac cccagtttac 661 acaggtgcac ttaaggatga attagtcaaa actgacaaaa tttatggtaa gatcaagaag 721 aggcttctct ggggctcgga tttagcaacc atgatccggt gtgctcgagc attcggaggc 781 ctaatggatg aactcaaagc acactgtgtc acactgccta tcagagttgg tatgaatatg 841 aatgaggatg gccccatcat cttcgagaag cactccaggt tcagatacca ctatgatgct 901 gattactctc ggtgggattc aacacaacag agggccgtgc tggcagctgc tctagaaatc 961 atggttaaat tctcctcgga accacatttg gctcaggtag tcgcagaaga ccttctttct 1021 cctagcgtgg tggatgtggg tgacttcaca atatcaatca acgagggtct tccctctggg 1081 gtgccctgca cctcccaatg gaactccatc gcccactggc ttctcactct ctgtgcgctc 1141 tccgaagtta caaatttgtc cccagacatc atacaggcta attctctctt ctccttctat 1201 ggtgatgatg aaattgttag tacagacata aaactagacc cggagaagtt gacagcaaag 1261 cttaaggaat atgggttgaa accaacccgc cctgataaaa ctgaagggcc tcttgttatt 1321 tctgaagact tggatggttt gactttcctg cggagaactg tgacccgcga cccagctggt 1381 tggtttggaa aactggagca gagctcaata ctcaggcaaa tgtactggac caggggcccc 1441 aaccatgaag atccatctga atcaatgatt ccacactctc agagacccat acaattgatg 1501 tccttactgg gagaggccgc actccacggc ccaacattct acagtaaaat cagcaaatta 1561 gtcattgcag agctaaaaga aggtggtatg gatttttacg tgcccaggca agagccaatg 1621 ttcagatgga tgagattctc agatctgagc acgtgggagg gcgatcgcaa tctggctccc 1681 agttttgtga atgaagatgg cgtcgaatga cgccagccca tctgatgggt ccgcagccaa 1741 cctcgtccca gaggtcaaca atgaggttat ggctttggag cccgttgtcg gtgccgcaat 1801 tgcggcgcct gtagcgggcc aacaaaatgt aattgacccc tggattagaa ataattttgt 1861 acaagcccct ggtggagagt tcacagtatc ccctagaaac gctccaggcg aaatattgtg 1921 gagcgcgccc ttaggccctg atctgaatcc ctacctatct catttggcca gaatgtataa 1981 tggttatgca ggtggttttg aagtgcaggt gatcctcgcg gggaacgcgt tcaccgccgg 2041 aaaaattata tttgcagcag tcccaccaaa ttttccaact gaaggcttga gccccagcca 2101 ggttaccatg ttcccccaca taatagtaga tgttaggcaa ttggaacctg tgttgatccc 2161 cttacctgat gttaggaata acttctatca ttataatcag tcaaatgatt ctaccattaa 2221 attgatagca atgctgtata caccacttag ggctaataat gctggggaag atgtcttcac 2281 agtctcttgt cgagtcctca cgaggccatc ccccgatttt gattttatat ttttggtgcc 2341 acctacagtt gagtcaagaa ctaaaccatt cactgtccca atcttaactg ttgaagaaat 2401 gactaattca agattcccca ttcctttgga aaagttgttc acgggtccca gcggcgcctt 2461 tgttgttcaa ccacaaaatg gcagatgcac gactgatggc gtgctcctag gcaccaccca 2521 actgtctcct gtcaacatct gcaccttcag aggggatgtc acccacattg caggttctcg 2581 taactacaca atgaatttgg ctgctctgaa ttggaacaat tatgacccaa cagaagaaat 2641 tccagcccct ctaggaaccc cagatttcgt gggaaagatc caaggtgtgc tcactcaaac 2701 cacaaaggca gatggctcga cccgtggcca taaagctaca gtttatactg ggagtgccga 2761 ctttactcca aagctgggca gtgttcaatt cagtactgat acagaaaatg attttgaaac 2821 tcaccaaaac acaaaattca ccccagtcgg tgtcatccag gatggtagca ccacccaccg 2881 aaatgaaccc caacaatggg tgctcccgag ttattcaggt agaaatgtcc ataatgtaca 2941 cctagcccct gctgtagccc ccacctttcc gggtgaacaa cttcttttct tcaggtccac 3001 tatgcccgga tgcagcgggt atcccaacat ggatttggat tgcctactcc cccaagagtg 3061 ggtgcagcac ttctaccaag aggcagctcc agcacaatct gatgtggctc tattgagatt 3121 tgtgaatcca gacacgggta gggtcctgtt tgagtgcaaa cttcataaat caggctatgt 3181 cacagtggct cacaccggcc agcatgactt ggtcatcccc cccaatggct attttaggtt 3241 tgattcctgg gttaatcaat tctacacact tgcccccatg ggaaatggaa cggggcgtag 3301 acgtgcttta taatggctgg agctttcttt gctggattgg catctgatgt ccttggctct 3361 ggacttggtt ccctgattaa tgctggggct ggggctatca accaaaagat tgattttgaa 3421 aataacagaa aattgcagca agcttccttc cagtttagca gtaatctaca acaggcttcc 3481 tttcaacatg acaaagagat gctccaagca caaattgagg ccactaaaaa gttgcaacag 3541 gaaatgatga gagtcaaaca ggcaatgctc ttagaaggtg gattctctga aacagatgca 3601 gcccgtgggg caatcaacgc ccccatgaca aaggctttgg actggagcgg aacaaggtac 3661 tgggcccctg atgctaggat tacaacatac aatgcaggcc gcttttcctc ccctcaacct 3721 tcgggggcac tgccaggaag aatcaatccc agggctccca cccccgctcg gggctcctct 3781 agcacatctt ctaatgcttc tactgctact tctatatatt caaatcaaac cgcttcaacg 3841 agacttggtt ctacagctgg ttctggcacc aatgtctcga gtctcccgtc aactgcaagg 3901 actaggagtt gggttgagga tcaaaacaga aatttgtcac ctttcatgag gggggctcac 3961 gacatatcgt ttgtcactcc accatctagt agatcctcta gccaaggcac agtctcaacc 4021 gtgcctaaag aagttttgga ctcctggact ggcgctttca acacgcgcag gcagcctctc 4081 ttcgctcaca ttcgtaggcg aggggagtca cgggtgtaat gtgaaaagac aaaattgatt 4141 atctttcctt ttctttagtg tcttttaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 4201 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa //