Typing tool
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Typing tool
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Complete norovirus genomes
| KM245071 | GII.4 Den Haag | |
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| GII.P4 Den Haag |
ORF1: 1..1710
ORF2: 1691..3313
ORF3: 3313..4119
LOCUS KM245071 4230 bp RNA linear VRL 01-AUG-2015
DEFINITION Norovirus 08-F-2/2008/GII.4/DenHaag/2006b nonstructural protein
gene, partial cds; and major capsid protein and minor structural
protein genes, complete cds.
ACCESSION KM245071
VERSION KM245071.1
KEYWORDS .
SOURCE Norovirus 08-F-2/2008/GII.4/DenHaag/2006b
ORGANISM Norovirus 08-F-2/2008/GII.4/DenHaag/2006b
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 4230)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Norovirus GII.4 gastroenteritis outbreaks
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4230)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Direct Submission
JOURNAL Submitted (28-JUL-2014) Centers for Disease Control department of
health Taiwain, R.O.C., Center for Research and Diagnostics, No.
161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..4230
/organism="Norovirus 08-F-2/2008/GII.4/DenHaag/2006b"
/mol_type="genomic RNA"
/isolate="08-F-2/2008/GII.4 DenHaag 2006b"
/isolation_source="stool specimen from a 59-year old
female with diarrhea"
/host="Homo sapiens"
/db_xref="taxon:1631313"
/geo_loc_name="Taiwan"
/collection_date="Jan-2008"
CDS <1..1710
/note="ORF1"
/codon_start=1
/product="nonstructural protein"
/protein_id="AJZ77009.1"
/translation="TGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAARGGNT
VICATQGGEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTVPLPPGTYEP
AYLGGKDPRVKGGPSLQQVMREQLKPFTEPRGKPPKPSVLEAAKKTIINVLEQTIDPP
EKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFEEGKNMTP
VYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKAHCVTLPIRV
GMNMNEDGPIIFEKHSRFRYHYDADYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVV
AEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQ
ANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFL
RRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSESMIPHSQRPIQLMSLLGEAAL
HGPTFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNED
GVE"
CDS 1691..3313
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AJZ77010.1"
/translation="MKMASNDASPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSGAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGSRNYTMNLAALNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTKADGSTRGHKATVYTGSADFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 3313..4119
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="AJZ77011.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKIDFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARITTYNAGRFSSPQPSGALPGRINPRAPTPARGSSSTSS
NASTATSIYSNQTASTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHDI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV"
ORIGIN
1 acaggatcca acgccaaaag catggatcta ggcaccacac caggtgattg cggctgtccc
61 tacatctaca agagaggaaa tgactatgtg gtcattggag tccacacggc tgccgctcgt
121 ggtggaaaca ctgtcatatg tgccacccag gggggtgagg gggaagctac acttgaaggt
181 ggtgacagta agggaacata ctgtggtgca ccaatcctag gcccagggag cgccccaaaa
241 cttagcacca aaaccaaatt ctggaggtcg tccacagtac cgctcccacc tggcacctat
301 gaaccagcct accttggtgg caaggacccc agagtcaagg gtggcccctc gttgcagcaa
361 gtcatgagag aacagctgaa accatttaca gagcccaggg gtaagccacc aaagccaagt
421 gtgttagaag ctgccaagaa aaccatcatc aatgtccttg aacaaacaat tgacccacct
481 gagaagtggt cgttcgcaca agcttgcgcg tcccttgaca agaccacttc tagcggccat
541 ccgcaccaca tgcggaaaaa cgactgctgg aacggggagt ccttcacagg caagctggca
601 gaccaggctt ccaaggccaa cctgatgttt gaagaaggga agaacatgac cccagtttac
661 acaggtgcac ttaaggatga attagtcaaa actgacaaaa tttatggtaa gatcaagaag
721 aggcttctct ggggctcgga tttagcaacc atgatccggt gtgctcgagc attcggaggc
781 ctaatggatg aactcaaagc acactgtgtc acactgccta tcagagttgg tatgaatatg
841 aatgaggatg gccccatcat cttcgagaag cactccaggt tcagatacca ctatgatgct
901 gattactctc ggtgggattc aacacaacag agggccgtgc tggcagctgc tctagaaatc
961 atggttaaat tctcctcgga accacatttg gctcaggtag tcgcagaaga ccttctttct
1021 cctagcgtgg tggatgtggg tgacttcaca atatcaatca acgagggtct tccctctggg
1081 gtgccctgca cctcccaatg gaactccatc gcccactggc ttctcactct ctgtgcgctc
1141 tccgaagtta caaatttgtc cccagacatc atacaggcta attctctctt ctccttctat
1201 ggtgatgatg aaattgttag tacagacata aaactagacc cggagaagtt gacagcaaag
1261 cttaaggaat atgggttgaa accaacccgc cctgataaaa ctgaagggcc tcttgttatt
1321 tctgaagact tggatggttt gactttcctg cggagaactg tgacccgcga cccagctggt
1381 tggtttggaa aactggagca gagctcaata ctcaggcaaa tgtactggac caggggcccc
1441 aaccatgaag atccatctga atcaatgatt ccacactctc agagacccat acaattgatg
1501 tccttactgg gagaggccgc actccacggc ccaacattct acagtaaaat cagcaaatta
1561 gtcattgcag agctaaaaga aggtggtatg gatttttacg tgcccaggca agagccaatg
1621 ttcagatgga tgagattctc agatctgagc acgtgggagg gcgatcgcaa tctggctccc
1681 agttttgtga atgaagatgg cgtcgaatga cgccagccca tctgatgggt ccgcagccaa
1741 cctcgtccca gaggtcaaca atgaggttat ggctttggag cccgttgtcg gtgccgcaat
1801 tgcggcgcct gtagcgggcc aacaaaatgt aattgacccc tggattagaa ataattttgt
1861 acaagcccct ggtggagagt tcacagtatc ccctagaaac gctccaggcg aaatattgtg
1921 gagcgcgccc ttaggccctg atctgaatcc ctacctatct catttggcca gaatgtataa
1981 tggttatgca ggtggttttg aagtgcaggt gatcctcgcg gggaacgcgt tcaccgccgg
2041 aaaaattata tttgcagcag tcccaccaaa ttttccaact gaaggcttga gccccagcca
2101 ggttaccatg ttcccccaca taatagtaga tgttaggcaa ttggaacctg tgttgatccc
2161 cttacctgat gttaggaata acttctatca ttataatcag tcaaatgatt ctaccattaa
2221 attgatagca atgctgtata caccacttag ggctaataat gctggggaag atgtcttcac
2281 agtctcttgt cgagtcctca cgaggccatc ccccgatttt gattttatat ttttggtgcc
2341 acctacagtt gagtcaagaa ctaaaccatt cactgtccca atcttaactg ttgaagaaat
2401 gactaattca agattcccca ttcctttgga aaagttgttc acgggtccca gcggcgcctt
2461 tgttgttcaa ccacaaaatg gcagatgcac gactgatggc gtgctcctag gcaccaccca
2521 actgtctcct gtcaacatct gcaccttcag aggggatgtc acccacattg caggttctcg
2581 taactacaca atgaatttgg ctgctctgaa ttggaacaat tatgacccaa cagaagaaat
2641 tccagcccct ctaggaaccc cagatttcgt gggaaagatc caaggtgtgc tcactcaaac
2701 cacaaaggca gatggctcga cccgtggcca taaagctaca gtttatactg ggagtgccga
2761 ctttactcca aagctgggca gtgttcaatt cagtactgat acagaaaatg attttgaaac
2821 tcaccaaaac acaaaattca ccccagtcgg tgtcatccag gatggtagca ccacccaccg
2881 aaatgaaccc caacaatggg tgctcccgag ttattcaggt agaaatgtcc ataatgtaca
2941 cctagcccct gctgtagccc ccacctttcc gggtgaacaa cttcttttct tcaggtccac
3001 tatgcccgga tgcagcgggt atcccaacat ggatttggat tgcctactcc cccaagagtg
3061 ggtgcagcac ttctaccaag aggcagctcc agcacaatct gatgtggctc tattgagatt
3121 tgtgaatcca gacacgggta gggtcctgtt tgagtgcaaa cttcataaat caggctatgt
3181 cacagtggct cacaccggcc agcatgactt ggtcatcccc cccaatggct attttaggtt
3241 tgattcctgg gttaatcaat tctacacact tgcccccatg ggaaatggaa cggggcgtag
3301 acgtgcttta taatggctgg agctttcttt gctggattgg catctgatgt ccttggctct
3361 ggacttggtt ccctgattaa tgctggggct ggggctatca accaaaagat tgattttgaa
3421 aataacagaa aattgcagca agcttccttc cagtttagca gtaatctaca acaggcttcc
3481 tttcaacatg acaaagagat gctccaagca caaattgagg ccactaaaaa gttgcaacag
3541 gaaatgatga gagtcaaaca ggcaatgctc ttagaaggtg gattctctga aacagatgca
3601 gcccgtgggg caatcaacgc ccccatgaca aaggctttgg actggagcgg aacaaggtac
3661 tgggcccctg atgctaggat tacaacatac aatgcaggcc gcttttcctc ccctcaacct
3721 tcgggggcac tgccaggaag aatcaatccc agggctccca cccccgctcg gggctcctct
3781 agcacatctt ctaatgcttc tactgctact tctatatatt caaatcaaac cgcttcaacg
3841 agacttggtt ctacagctgg ttctggcacc aatgtctcga gtctcccgtc aactgcaagg
3901 actaggagtt gggttgagga tcaaaacaga aatttgtcac ctttcatgag gggggctcac
3961 gacatatcgt ttgtcactcc accatctagt agatcctcta gccaaggcac agtctcaacc
4021 gtgcctaaag aagttttgga ctcctggact ggcgctttca acacgcgcag gcagcctctc
4081 ttcgctcaca ttcgtaggcg aggggagtca cgggtgtaat gtgaaaagac aaaattgatt
4141 atctttcctt ttctttagtg tcttttaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
4201 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//