Typing tool
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Typing tool
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Complete norovirus genomes
| KM245070 | GII.4 Den Haag | |
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| GII.P4 Den Haag |
ORF1: 1..1710
ORF2: 1691..3313
ORF3: 3313..4119
LOCUS KM245070 4201 bp RNA linear VRL 01-AUG-2015
DEFINITION Norovirus 07-B-1/2007/GII.4/DenHaag/2006b nonstructural protein
gene, partial cds; and major capsid protein and minor structural
protein genes, complete cds.
ACCESSION KM245070
VERSION KM245070.1
KEYWORDS .
SOURCE Norovirus 07-B-1/2007/GII.4/DenHaag/2006b
ORGANISM Norovirus 07-B-1/2007/GII.4/DenHaag/2006b
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 4201)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Norovirus GII.4 gastroenteritis outbreaks
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4201)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Direct Submission
JOURNAL Submitted (28-JUL-2014) Centers for Disease Control department of
health Taiwain, R.O.C., Center for Research and Diagnostics, No.
161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..4201
/organism="Norovirus 07-B-1/2007/GII.4/DenHaag/2006b"
/mol_type="genomic RNA"
/isolate="07-B-1/2007/GII.4 DenHaag 2006b"
/isolation_source="stool specimen from a 79-year old male
with diarrhea"
/host="Homo sapiens"
/db_xref="taxon:1631310"
/geo_loc_name="Taiwan"
/collection_date="Jan-2007"
CDS <1..1710
/note="ORF1"
/codon_start=1
/product="nonstructural protein"
/protein_id="AJZ77006.1"
/translation="TGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAARGGNT
VICATQGGEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTAPLPPGTYEP
AYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAAKKTIINVLEQTIDPP
EKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFEEGKNMTP
VYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKAHCVTLPIRV
GMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVV
AEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQ
ANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFL
RRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSESMIPHSQRPIQLMSLLGEAAL
HGPTFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNED
GVE"
CDS 1691..3313
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AJZ77007.1"
/translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSGAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTKGDGSTRGHKATVYTGGAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 3313..4119
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="AJZ77008.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKIDFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRINPRAPTPARVSSSASS
NASTATSIYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV"
ORIGIN
1 acaggatcca acgccaaaag catggatcta ggcaccacac caggtgattg cggctgtccc
61 tatatctaca agagaggaaa tgactatgtg gtcattggag tccacacggc tgccgctcgt
121 gggggaaaca ctgtcatatg tgccacccag gggggtgagg gggaagctac acttgaaggt
181 ggtgacagta agggaacata ctgtggtgca ccaatcctag gcccagggag cgccccaaaa
241 cttagcacca aaaccaaatt ctggagatca tccacagcac cactcccacc tggcacctat
301 gaaccagcct accttggtgg caaggacccc agagtcaagg gtggcccctc gttgcagcaa
361 gtcatgaggg accagctgaa accgtttaca gagcccaggg gtaagccacc aaagccaagt
421 gtgttagaag ctgccaagaa aaccatcatc aatgttcttg aacaaacaat tgacccacct
481 gagaaatggt cgttcgcaca agcttgcgcg tcccttgaca agaccacttc tagcggccat
541 ccgcaccaca tgcggaaaaa cgactgctgg aacggggagt cctttacagg caagctggca
601 gaccaggctt ccaaggccaa cctgatgttt gaagaaggga agaacatgac cccagtttac
661 acaggtgcac ttaaggatga attagtcaaa actgacaaaa tttatggtaa gatcaagaag
721 aggcttctct ggggctcgga tttagcaacc atgatccggt gtgctcgagc attcggaggc
781 ctaatggatg aactcaaagc acactgtgtc acacttccta tcagagttgg tatgaatatg
841 aatgaggatg gccccatcat cttcgagaag cattccaggt acagatacca ctatgatgct
901 gattactctc ggtgggattc aacacaacag agagccgtgc tggcagctgc tctggaaatc
961 atggttaaat tctcctcaga accacatttg gctcaggtgg tcgcagaaga ccttctttct
1021 cctagcgtgg tggatgtggg tgacttcaca atatcaatca acgagggtct tccctctggg
1081 gtgccctgca cctcccaatg gaactccatc gcccactggc ttctcactct ctgtgcactc
1141 tccgaagtta caaatttgtc cccagacatc atacaggcta attctctctt ctccttctat
1201 ggtgatgatg aaattgttag tacagacata aaactagacc cagagaagtt gacagcaaag
1261 cttaaggaat atgggttgaa accaacccgc cctgataaaa ctgaaggacc tcttgttatt
1321 tctgaagact tagatggttt gactttcctg cggagaactg tgacccgcga cccagctggt
1381 tggtttggaa aactggagca gagctcaata ctcaggcaaa tgtactggac taggggcccc
1441 aaccatgaag atccatctga atcaatgatt ccacactctc aaagacccat acaattgatg
1501 tccttactgg gagaggccgc actccacggc ccaacattct acagtaaaat cagcaaatta
1561 gtcattgcag agctaaaaga aggtggtatg gatttttacg tgcccaggca agagccaatg
1621 ttcagatgga tgagattctc agatctgagc acgtgggagg gcgatcgcaa tctggctccc
1681 agttttgtga atgaagatgg cgtcgaatga cgccaaccca tctgatgggt ccgcagccaa
1741 cctcgtccca gaggtcaaca atgaggttat ggctttggag cccgttgtcg gtgccgctat
1801 tgcggcgcct gtagcgggcc aacaaaatgt aattgacccc tggattagaa ataattttgt
1861 acaagcccct ggtggagagt tcacagtatc ccctagaaac gctccaggtg aaatactatg
1921 gagcgcgccc ttaggccctg atctgaatcc ctacctatct catttggcca gaatgtataa
1981 tggttatgca ggtggttttg aagtgcaggt gatcctcgcg gggaacgcgt tcaccgccgg
2041 gaaaattata tttgcagcag tcccaccaaa ttttccaact gaaggcttga gccccagtca
2101 ggtcactatg ttcccccaca taatagtaga tgttaggcaa ttggaacctg tgttgatccc
2161 cttacctgat gttaggaata acttctatca ttataatcag tcaaatgatt ctaccattaa
2221 attgatagca atgctgtata caccacttag ggctaataat gctggggaag atgtcttcac
2281 agtctcttgt cgagtcctca cgaggccatc ccctgatttt gattttatat ttttggtgcc
2341 acctacagtt gagtcaagaa ctaaaccatt tactgtccca atcttaactg ttgaagaaat
2401 gaccaattca agattcccca ttcctttgga aaagttgttc acgggtccca gcggtgcctt
2461 tgttgttcaa ccacaaaatg gcagatgcac gactgatggc gtgctcttag gcaccaccca
2521 actgtctcct gtcaacatct gcaccttcag aggggatgtc acccacattg caggttctcg
2581 taattacaca atgaatttgg cttctctaaa ttggaacaat tatgacccaa cagaagaaat
2641 tccagcccct ctaggaactc cagatttcgt gggaaagatc caaggtgtgc tcactcaaac
2701 cacaaaggga gatggctcga cccgtggcca taaagctaca gtttacactg ggggtgcccc
2761 ctttactcca aagctgggca gtgttcaatt cagtactgat acagaaaatg attttgaaac
2821 tcaccaaaac acaaaattca ccccagtcgg tgtcatccag gatggtagca ccacccaccg
2881 aaatgaaccc caacaatggg tgctcccaag ttattcaggt agaaatgtcc ataatgtaca
2941 cctagcccct gctgtagccc ccacttttcc gggtgaacaa cttcttttct tcaggtccac
3001 tatgcccgga tgcagcgggt atcccaacat ggatttggat tgcctactcc cccaggagtg
3061 ggtgcaacac ttctaccaag aggcagctcc agcacaatct gacgtggctc tattgaggtt
3121 tgtgaaccca gacacgggta gggtcctgtt tgagtgcaaa cttcataaat caggctatgt
3181 cacagtggct cacaccggcc agcatgattt ggtcatcccc cccaatggct attttaggtt
3241 tgattcctgg gttaatcaat tctacacact tgcccccatg ggaaatggaa cggggcgtag
3301 acgtgcttta taatggctgg ggctttcttt gctggattgg catctgatgt ccttggctct
3361 ggacttggtt ccctaatcaa tgctggggct ggggctatca accaaaagat tgattttgaa
3421 aataacagaa aattgcagca agcttccttc cagtttagca gtaatctaca acaggcttcc
3481 tttcaacatg acaaagagat gctccaagca caaattgagg ccactaaaaa gttgcaacag
3541 gaaatgatga aagtcaaaca ggcaatgctc ttagaaggtg gattctctga aacagatgca
3601 gctcgtgggg caatcaacgc ccccatgaca aaggctttgg actggagcgg aacaaggtac
3661 tgggcccctg atgctaggac tacaacatac aatgcaggcc gcttttccac ccctcaacct
3721 tcgggggcac tgccaggaag aatcaatccc agggctccta cccccgctcg ggtctcctcc
3781 agtgcatctt ctaatgcttc tactgctact tctatatatt caaatcaaac tgtttcaacg
3841 agacttggtt ctacagctgg ttctggcacc aatgtctcga gtctcccgtc aactgcaagg
3901 actaggagtt gggttgagga tcaaagcaga aatttgtcac ctttcatgag gggggctcac
3961 aacatatcgt ttgtcacccc accatctagc agatcctcta gccaaggcac agtctcaacc
4021 gtgcctaaag aagttttgga ctcctggact ggcgctttca acacgcgcag gcagcccctc
4081 ttcgctcaca ttcgtaggcg aggggagtca cgggtgtaat gtgaaaagac aaaattgatt
4141 atctttcctt ttctttagtg tcttttaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
4201 a
//