Typing tool
|
Complete norovirus genomes
KM245070 | GII.4 Den Haag | ||
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GII.P4 Den Haag |
ORF1: 1..1710 ORF2: 1691..3313 ORF3: 3313..4119LOCUS KM245070 4201 bp RNA linear VRL 01-AUG-2015 DEFINITION Norovirus 07-B-1/2007/GII.4/DenHaag/2006b nonstructural protein gene, partial cds; and major capsid protein and minor structural protein genes, complete cds. ACCESSION KM245070 VERSION KM245070.1 KEYWORDS . SOURCE Norovirus 07-B-1/2007/GII.4/DenHaag/2006b ORGANISM Norovirus 07-B-1/2007/GII.4/DenHaag/2006b Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 4201) AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T. TITLE Norovirus GII.4 gastroenteritis outbreaks JOURNAL Unpublished REFERENCE 2 (bases 1 to 4201) AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T. TITLE Direct Submission JOURNAL Submitted (28-JUL-2014) Centers for Disease Control department of health Taiwain, R.O.C., Center for Research and Diagnostics, No. 161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C. FEATURES Location/Qualifiers source 1..4201 /organism="Norovirus 07-B-1/2007/GII.4/DenHaag/2006b" /mol_type="genomic RNA" /isolate="07-B-1/2007/GII.4 DenHaag 2006b" /isolation_source="stool specimen from a 79-year old male with diarrhea" /host="Homo sapiens" /db_xref="taxon:1631310" /country="Taiwan" /collection_date="Jan-2007" CDS <1..1710 /note="ORF1" /codon_start=1 /product="nonstructural protein" /protein_id="AJZ77006.1" /translation="TGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAARGGNT VICATQGGEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTAPLPPGTYEP AYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAAKKTIINVLEQTIDPP EKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFEEGKNMTP VYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKAHCVTLPIRV GMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLAAALEIMVKFSSEPHLAQVV AEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDIIQ ANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFL RRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSESMIPHSQRPIQLMSLLGEAAL HGPTFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNED GVE" CDS 1691..3313 /note="VP1" /codon_start=1 /product="major capsid protein" /protein_id="AJZ77007.1" /translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSGAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL TQTTKGDGSTRGHKATVYTGGAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG STTHRNEPQQWVLPSYSGRNVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 3313..4119 /note="VP2" /codon_start=1 /product="minor structural protein" /protein_id="AJZ77008.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKIDFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRINPRAPTPARVSSSASS NASTATSIYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQSRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV" ORIGIN 1 acaggatcca acgccaaaag catggatcta ggcaccacac caggtgattg cggctgtccc 61 tatatctaca agagaggaaa tgactatgtg gtcattggag tccacacggc tgccgctcgt 121 gggggaaaca ctgtcatatg tgccacccag gggggtgagg gggaagctac acttgaaggt 181 ggtgacagta agggaacata ctgtggtgca ccaatcctag gcccagggag cgccccaaaa 241 cttagcacca aaaccaaatt ctggagatca tccacagcac cactcccacc tggcacctat 301 gaaccagcct accttggtgg caaggacccc agagtcaagg gtggcccctc gttgcagcaa 361 gtcatgaggg accagctgaa accgtttaca gagcccaggg gtaagccacc aaagccaagt 421 gtgttagaag ctgccaagaa aaccatcatc aatgttcttg aacaaacaat tgacccacct 481 gagaaatggt cgttcgcaca agcttgcgcg tcccttgaca agaccacttc tagcggccat 541 ccgcaccaca tgcggaaaaa cgactgctgg aacggggagt cctttacagg caagctggca 601 gaccaggctt ccaaggccaa cctgatgttt gaagaaggga agaacatgac cccagtttac 661 acaggtgcac ttaaggatga attagtcaaa actgacaaaa tttatggtaa gatcaagaag 721 aggcttctct ggggctcgga tttagcaacc atgatccggt gtgctcgagc attcggaggc 781 ctaatggatg aactcaaagc acactgtgtc acacttccta tcagagttgg tatgaatatg 841 aatgaggatg gccccatcat cttcgagaag cattccaggt acagatacca ctatgatgct 901 gattactctc ggtgggattc aacacaacag agagccgtgc tggcagctgc tctggaaatc 961 atggttaaat tctcctcaga accacatttg gctcaggtgg tcgcagaaga ccttctttct 1021 cctagcgtgg tggatgtggg tgacttcaca atatcaatca acgagggtct tccctctggg 1081 gtgccctgca cctcccaatg gaactccatc gcccactggc ttctcactct ctgtgcactc 1141 tccgaagtta caaatttgtc cccagacatc atacaggcta attctctctt ctccttctat 1201 ggtgatgatg aaattgttag tacagacata aaactagacc cagagaagtt gacagcaaag 1261 cttaaggaat atgggttgaa accaacccgc cctgataaaa ctgaaggacc tcttgttatt 1321 tctgaagact tagatggttt gactttcctg cggagaactg tgacccgcga cccagctggt 1381 tggtttggaa aactggagca gagctcaata ctcaggcaaa tgtactggac taggggcccc 1441 aaccatgaag atccatctga atcaatgatt ccacactctc aaagacccat acaattgatg 1501 tccttactgg gagaggccgc actccacggc ccaacattct acagtaaaat cagcaaatta 1561 gtcattgcag agctaaaaga aggtggtatg gatttttacg tgcccaggca agagccaatg 1621 ttcagatgga tgagattctc agatctgagc acgtgggagg gcgatcgcaa tctggctccc 1681 agttttgtga atgaagatgg cgtcgaatga cgccaaccca tctgatgggt ccgcagccaa 1741 cctcgtccca gaggtcaaca atgaggttat ggctttggag cccgttgtcg gtgccgctat 1801 tgcggcgcct gtagcgggcc aacaaaatgt aattgacccc tggattagaa ataattttgt 1861 acaagcccct ggtggagagt tcacagtatc ccctagaaac gctccaggtg aaatactatg 1921 gagcgcgccc ttaggccctg atctgaatcc ctacctatct catttggcca gaatgtataa 1981 tggttatgca ggtggttttg aagtgcaggt gatcctcgcg gggaacgcgt tcaccgccgg 2041 gaaaattata tttgcagcag tcccaccaaa ttttccaact gaaggcttga gccccagtca 2101 ggtcactatg ttcccccaca taatagtaga tgttaggcaa ttggaacctg tgttgatccc 2161 cttacctgat gttaggaata acttctatca ttataatcag tcaaatgatt ctaccattaa 2221 attgatagca atgctgtata caccacttag ggctaataat gctggggaag atgtcttcac 2281 agtctcttgt cgagtcctca cgaggccatc ccctgatttt gattttatat ttttggtgcc 2341 acctacagtt gagtcaagaa ctaaaccatt tactgtccca atcttaactg ttgaagaaat 2401 gaccaattca agattcccca ttcctttgga aaagttgttc acgggtccca gcggtgcctt 2461 tgttgttcaa ccacaaaatg gcagatgcac gactgatggc gtgctcttag gcaccaccca 2521 actgtctcct gtcaacatct gcaccttcag aggggatgtc acccacattg caggttctcg 2581 taattacaca atgaatttgg cttctctaaa ttggaacaat tatgacccaa cagaagaaat 2641 tccagcccct ctaggaactc cagatttcgt gggaaagatc caaggtgtgc tcactcaaac 2701 cacaaaggga gatggctcga cccgtggcca taaagctaca gtttacactg ggggtgcccc 2761 ctttactcca aagctgggca gtgttcaatt cagtactgat acagaaaatg attttgaaac 2821 tcaccaaaac acaaaattca ccccagtcgg tgtcatccag gatggtagca ccacccaccg 2881 aaatgaaccc caacaatggg tgctcccaag ttattcaggt agaaatgtcc ataatgtaca 2941 cctagcccct gctgtagccc ccacttttcc gggtgaacaa cttcttttct tcaggtccac 3001 tatgcccgga tgcagcgggt atcccaacat ggatttggat tgcctactcc cccaggagtg 3061 ggtgcaacac ttctaccaag aggcagctcc agcacaatct gacgtggctc tattgaggtt 3121 tgtgaaccca gacacgggta gggtcctgtt tgagtgcaaa cttcataaat caggctatgt 3181 cacagtggct cacaccggcc agcatgattt ggtcatcccc cccaatggct attttaggtt 3241 tgattcctgg gttaatcaat tctacacact tgcccccatg ggaaatggaa cggggcgtag 3301 acgtgcttta taatggctgg ggctttcttt gctggattgg catctgatgt ccttggctct 3361 ggacttggtt ccctaatcaa tgctggggct ggggctatca accaaaagat tgattttgaa 3421 aataacagaa aattgcagca agcttccttc cagtttagca gtaatctaca acaggcttcc 3481 tttcaacatg acaaagagat gctccaagca caaattgagg ccactaaaaa gttgcaacag 3541 gaaatgatga aagtcaaaca ggcaatgctc ttagaaggtg gattctctga aacagatgca 3601 gctcgtgggg caatcaacgc ccccatgaca aaggctttgg actggagcgg aacaaggtac 3661 tgggcccctg atgctaggac tacaacatac aatgcaggcc gcttttccac ccctcaacct 3721 tcgggggcac tgccaggaag aatcaatccc agggctccta cccccgctcg ggtctcctcc 3781 agtgcatctt ctaatgcttc tactgctact tctatatatt caaatcaaac tgtttcaacg 3841 agacttggtt ctacagctgg ttctggcacc aatgtctcga gtctcccgtc aactgcaagg 3901 actaggagtt gggttgagga tcaaagcaga aatttgtcac ctttcatgag gggggctcac 3961 aacatatcgt ttgtcacccc accatctagc agatcctcta gccaaggcac agtctcaacc 4021 gtgcctaaag aagttttgga ctcctggact ggcgctttca acacgcgcag gcagcccctc 4081 ttcgctcaca ttcgtaggcg aggggagtca cgggtgtaat gtgaaaagac aaaattgatt 4141 atctttcctt ttctttagtg tcttttaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 4201 a //