Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| KM245069 | GII.4 Yerseke | |
|
|---|---|---|---|
| GII.P4 Yerseke |
ORF1: 1..1710
ORF2: 1691..3313
ORF3: 3313..4110
LOCUS KM245069 4110 bp RNA linear VRL 01-AUG-2015
DEFINITION Norovirus 06-AM-11/2006/GII.4/Yerseke/2006a nonstructural protein
gene, partial cds; and major capsid protein and minor structural
protein genes, complete cds.
ACCESSION KM245069
VERSION KM245069.1
KEYWORDS .
SOURCE Norovirus 06-AM-11/2006/GII.4/Yerseke/2006a
ORGANISM Norovirus 06-AM-11/2006/GII.4/Yerseke/2006a
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 4110)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Norovirus GII.4 gastroenteritis outbreaks
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4110)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Direct Submission
JOURNAL Submitted (28-JUL-2014) Centers for Disease Control department of
health Taiwain, R.O.C., Center for Research and Diagnostics, No.
161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..4110
/organism="Norovirus 06-AM-11/2006/GII.4/Yerseke/2006a"
/mol_type="genomic RNA"
/isolate="06-AM-11/2006/GII.4 Yerseke 2006a"
/isolation_source="stool specimen from a 50-year old male
with diarrhea"
/host="Homo sapiens"
/db_xref="taxon:1631306"
/country="Taiwan"
/collection_date="Sep-2006"
CDS <1..1710
/note="ORF1"
/codon_start=1
/product="nonstructural protein"
/protein_id="AJZ77003.1"
/translation="TGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAARGGNT
VICATQGSEGEATLEGGDNKGTYCGAPILGPGSAPKLSTKTKFWRSSTASLPPGTYEP
AYLGGKDPRVKGGPSLQQVMREQLKPFTEPRGKPPKPSVLEAAKKTIINVLEQTIDPP
EKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFEEGKNMTP
VYTAALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKAHCVTLPIRV
GMNMNEDGPIIFERHSRYTYHYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVV
AEDLLSPSVVDVGDFTISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTNLSPDTIQ
ANSLFSFYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLVISEDLNGLTFL
RRTVTRDPAGWFGKLEQSSILRQMYWTRGSNHEDPSETMIPHSQRPIQLMSLLGEAAL
HGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNED
GVE"
CDS 1691..3313
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AJZ77004.1"
/translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNSYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHIASTQEYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRRDGSTRGHKATVSTGSVHFTPKLGRIQFSTDTSNDFETGQNTRFTPVGVVQDG
STTHQNEPQQWVLPNYSGRDSHNVHLAPAVAPSFPGEQLLFFRSTMPGCSGYPNMNLD
CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 3313..4110
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="AJZ77005.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNLGAAVPARGSSSTPS
NSSSVYSNQTASTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAYNISFV
TPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 acaggatcta acgccaaaag catggatctg ggtactacac caggtgattg tggctgtccc
61 tacatctaca agagaggaaa tgactatgtg gtcattggag tccacacggc tgccgctcgt
121 gggggaaaca ctgtcatatg tgccacccag gggagtgagg gagaggctac acttgaaggt
181 ggtgacaaca aggggacata ctgtggtgca ccaatcctag gcccagggag tgccccaaaa
241 cttagcacca agaccaaatt ctggagatcg tccacggcat cactcccacc tggcacctat
301 gaaccagcct atcttggtgg caaggaccct agagtcaagg gtggcccttc actgcagcaa
361 gtcatgaggg aacagttgaa gccattcaca gagcccaggg gcaagccacc aaagccaagt
421 gtgttagaag ctgccaagaa gaccatcatc aatgtccttg agcaaacaat tgatccacct
481 gagaaatggt cattcgcaca agcttgcgcg tcccttgaca agaccacttc cagtggtcat
541 ccgcaccata tgcggaaaaa cgactgctgg aacggggagt ccttcacagg caagctagca
601 gaccaggctt ccaaggccaa tctgatgttt gaagaaggga agaacatgac cccagtctac
661 acagctgcgc tcaaggatga attagttaaa actgacaaaa tttatggtaa gatcaagaag
721 aggcttctct ggggctcgga cttggcgacc atgattcggt gtgctcgagc attcggaggc
781 ctaatggatg aactcaaagc acactgtgtc acacttccca ttagagttgg tatgaatatg
841 aatgaggatg gccccatcat cttcgagagg cattccaggt acacatatca ctatgatgct
901 gattactctc gatgggattc aacacaacag agagccgtgt tggcagcagc tctagaaatc
961 atggttaaat tctccccaga accacatttg gctcaggtag tcgcggaaga ccttctttct
1021 cctagtgtgg tggacgtggg cgacttcaca atatcaatca atgagggtct tccctctggg
1081 gtgccctgca cctcccaatg gaactccatc gcccattggc ttctcactct ctgtgcgctc
1141 tctgaagtta caaacttgtc ccctgatacc atacaggcta attccctctt ctctttttat
1201 ggtgatgatg aaattgttag cacagatata aaattggacc cagagaaatt gacagcaaag
1261 ctcagggaat atgggttaaa accaacccgc cctgacaaaa ctgaaggacc ccttgtcatc
1321 tctgaagact tgaatggcct gactttcctg cggagaactg tgacccgcga cccagctggt
1381 tggtttggaa aactagagca gagttcaata ctcaggcaaa tgtactggac taggggctcc
1441 aaccatgaag acccatctga aacaatgatt ccacactccc aaagacccat acaattgatg
1501 tccctactgg gggaggctgc tcttcacggc ccagcattct acagcaaaat cagcaagtta
1561 gtcattgcag agctaaaaga aggtggcatg gatttttacg tgcccagaca agagccaatg
1621 ttcagatgga tgagattctc agatctgagc acgtgggagg gcgatcgcaa tctggctccc
1681 agttttgtga atgaagatgg cgtcgagtga cgccaaccca tctgatgggt ccacagccaa
1741 cctcgtccca gaggtcaaca atgaggttat ggctttggag cccgttgttg gtgccgctat
1801 tgcggcacct gtagcgggcc aacaaaatgt aattgacccc tggattagaa ataattttgt
1861 acaagcccct ggtggagagt ttacagtatc ccctagaaac gctccaggtg aaatactatg
1921 gagcgcgccc ttgggccctg atttgaatcc ctacctttcc catttggcca gaatgtataa
1981 tagttatgca ggtggttttg aagtgcaggt aatcctcgcg gggaacgcgt tcaccgccgg
2041 aaaaatcata tttgcagcag tcccaccaaa tttcccaact gaaggcttga gccccagcca
2101 ggtcactatg ttcccccata taatagtaga tgttaggcaa ctggaacctg tgttgatccc
2161 tttacccgat gttaggaata atttctatca ctacaatcaa tcaaacgacc ccaccatcaa
2221 attgatagca atgttgtata caccacttag ggctaataat gctggggacg atgtcttcac
2281 agtttcttgt cgggttctca cgagaccatc ccccgatttt gatttcatat ttttagtgcc
2341 acccacagtt gagtcaagaa ctaaaccatt ctctgtccca attttaactg ttgaggagat
2401 gaccaattca agattcccca ttcctttgga aaagttgttc acgggtccca gcagcgcctt
2461 tgttgttcaa ccacaaaatg gcaggtgcac gactgatggc gtgctcttag gtactaccca
2521 actgtctcct gtcaacatct gcaccttcag aggggatgtc acccacattg ctagtactca
2581 agaatacaca atgaatctgg cctcccaaaa ctggaacaat tatgacccaa cagaagaaat
2641 cccagcccct ctgggaactc cagatttcgt gggtaagatc caaggcgtgc tcacccaaac
2701 cacaaggagg gatggctcga cccgcggtca caaagccaca gtgagcactg gaagtgtcca
2761 cttcacccca aagctgggca gaattcaatt ctccactgat acaagcaatg attttgaaac
2821 tggccaaaac acgagattca ccccagtcgg tgttgtccag gatggtagta ccacccacca
2881 aaatgaaccc caacaatggg tactcccaaa ttattcaggt agagatagtc acaatgtgca
2941 cctagcccct gccgtggccc cctcttttcc gggtgagcaa cttcttttct tcaggtccac
3001 tatgcccgga tgcagcgggt atcccaacat gaatttggat tgtctactcc cccaggagtg
3061 ggtgcagcac ttctaccaag aggcagcccc agcacaatct gacgtggctc tgctaagatt
3121 tgtgaatcca gacacaggta gggttttgtt tgagtgtaag cttcataaat caggctatgt
3181 cacagtggct cacactggcc aacatgattt agttatcccc cccaatggct attttagatt
3241 tgattcctgg gtcaaccagt tctacacact tgcccccatg ggaaatggga cggggcgtag
3301 acgtgcatta taatggctgg agctttcttt gctggattgg catctgatgt ccttggctct
3361 ggacttggtt ccctaatcaa tgctggggct ggggccatca accaaaaagt tgaatttgaa
3421 aataacagaa agttgcaaca agcttccttc caatttagca gcaacctaca acaggcttcc
3481 tttcaacatg ataaagagat gctccaagca caaattgagg ccaccaaaaa gttgcaacag
3541 gaaatgatga aagttaaaca ggcaatgctc ctagagggtg ggttctctga gacagatgca
3601 gcccgtgggg caatcaacgc ccccatgaca aaggctttgg actggagcgg gacaaggtac
3661 tgggctcccg atgctaggac tacaacatac aatgcaggcc gcttttccac ccctcaaccc
3721 tcgggggcac tgccaggaag aactaatctt ggggctgctg tccccgcccg gggctcctct
3781 agtacacctt ctaactcttc ttctgtgtac tcaaatcaaa ctgcttcaac gagacttggt
3841 tctacagctg gttctggtac cagtgtctcg agcctcccgt caactgcaag gactaggagc
3901 tgggttgagg atcaaaatag gaatttgtca cctttcatga ggggggccta caacatatcg
3961 tttgtcaccc caccatctag cagatcctct agccaaggca cagtctcaac cgtgcctaaa
4021 gaagttttgg actcctggac tggcgctttc aacacgcgca ggcagcctct cttcgctcac
4081 attcgtaagc gaggggagtc acgggtgtaa
//