![]() |
![]() |
![]() |
![]() |
|
Typing tool
|
Complete norovirus genomes
KM198503 | GII.12 | ![]() |
|
---|---|---|---|
GII.P33 |
ORF1: 82..5094 ORF2: 5075..6682 ORF3: 6682..7366LOCUS KM198503 7366 bp RNA linear VRL 13-NOV-2014 DEFINITION Norovirus Hu/GII/C2033/2010/VNM nonstructural polyprotein and capsid protein VP1 genes, complete cds; and capsid protein VP2 gene, partial cds. ACCESSION KM198503 VERSION KM198503.1 KEYWORDS . SOURCE Norovirus Hu/GII/C2033/2010/VNM ORGANISM Norovirus Hu/GII/C2033/2010/VNM Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7366) AUTHORS Cotten,M., Petrova,V., Phan,M.V., Rabaa,M.A., Watson,S.J., Ong,S.H., Kellam,P. and Baker,S. TITLE Deep sequencing of norovirus genomes defines evolutionary patterns in an urban tropical setting JOURNAL J. Virol. 88 (19), 11056-11069 (2014) PUBMED 25056894 REFERENCE 2 (bases 1 to 7366) AUTHORS Cotten,M.L., Petrova,V., Phan,M.V.T., Rabaa,M.A., Watson,S.J., Kellam,P. and Baker,S. TITLE Direct Submission JOURNAL Submitted (13-JUL-2014) Virus Genomics, The Wellcome Trust Sanger Institute, Hinxton CB10 1SA, United Kingdom COMMENT ##Assembly-Data-START## Assembly Method :: SPAdes v. 2.4.0 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7366 /organism="Norovirus Hu/GII/C2033/2010/VNM" /mol_type="genomic RNA" /isolate="Hu/GII/C2033/2010/VNM" /host="Homo sapiens" /db_xref="taxon:1527005" /geo_loc_name="Viet Nam" /collection_date="28-Jun-2010" /note="genotype: GII" CDS 82..5094 /note="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="AII02637.1" /translation="MAVTFKRALGARPKQPPPRETTQKQKPPRPPTPELIKNIPPPPP NGDDDIVVSYSAKEGVSGLPELSTVRQPDETNTAFSVPPLNQREIRDAKEPLPGTILE MWDGEIYHYGLYVERGLVLGVHKPPAAISLAKVELTPLSLYWRPVYTPQYLISPETLK KLHGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTGFFRPYQDWNRKPLPTMD DSKLKKVANIVLCALSSLFTRPIKDIIGKLRPLNILNILASCDWTFAGVVESLILLAE LFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPVVMGGIGLVLGFTKEKIGKMLS SAASTLRACKDLGAYGLEILKLVMKWFFPKKNEASELAMVRSIEDAVLDLEAIENNHM TTLLKDKDSLATYMKTLDLEEEKARKLSTKSASPDIVGTINSLLARIAAARSLVHRAK EELSSRPRPVVVMISGKPGIGKTHLARDLAKKVAATLTGDQRVGLIPRNGVDHWDAYK GERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRIENKGKVFDSDAIIITTNLAN PAPLDYVNFEACSRRIDFLVYADAPDVEKAKRDFPGQPDMWKDAFRPDFSHIKLMLAP QGGFDKNGNTPHGKGVMKTLTSGSLVARASGLLHERLDEYELQGPTPTTFNFDQNKVF AFRQLAAENKYGLMDTMRVGSQLKNVKTVSELKQALKNIAIRRCQIVYSGLTYSLESD GKGNVRVEKVQSPAVQTNNELTGALHHLRCARIRYYVKCVQEALYSIIQIAGAAFVTT RIARRMNIQNLWSRPQVEDEEETTSKDGCPKPKDEEEFVISSEDIKVEGKKGKNKSGR GKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDKYYEEVAIARATEEDFC EEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPDDFKPKGKLWADDDRSVDY NEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLFVTSTHVIPQGAQEFFGVSIKQIQIHK SGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKRPTGELMPLAARMGTHATMRI QGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAARGGNTV ICATQGSEGEAVLEGGDNKGTYCGAPILGPGNAPKLSTKTKFWRSSMAPLPPGTYEPA YLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAAKKTIINVLEQTIDPPQ KWTFAQACASLDKTTSSGYPHHVRKNEHWNGESFTGKLADQASKANLMFEEGKHMTPV YTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMDEFKAHCVTLPIRVG MNMNEDGPIIFEKHSRYTYHYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQIVA EDLLSPSVMDVGDFKISITEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQA NSLFSFYGDDEIVSTDIRLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLR RTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPAETMIPHSQRPIQLMSLLGEAALH GPSFYSKISKLVISELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPNFVNEDG VE" CDS 5075..6682 /note="ORF2" /codon_start=1 /product="capsid protein VP1" /protein_id="AII02638.1" /translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ NNVIDPWIRLNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKLVFAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD VRNNFFHYNQQNEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP TVESKTKPFTLPILTIGELTNSRFPVPIDELYTSPNESLVVQPQNGRCALDGELQGTT QLLPTAICSFRGRINQKVSGENHVWNMQVTNINGTPFDPTEDVPAPLGTPDFSGKLFG VLSQRDHDNACRSHDAVIATNSAKFTPKLGAIQIGTWEQDDVHINQPTKFTPVGLFES EGFNQWTLPNYSGALTLNMGLAPPVAPTFPGEQILFFRSHIPLKGGVADPVIDCLLPQ EWIQHLYQESAPSQTDVALIRFTNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG YFRFDSWVNQFYSLAPMGTGNGRRRVQ" CDS 6682..>7366 /note="ORF3" /codon_start=1 /product="capsid protein VP2" /protein_id="AII02639.1" /translation="MAGAFIAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLQQA SFNHDKEMLQAQIQATKQLQADMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG TRHWAPGAMKTTAFSGGFTSASHARTVDLTRKTSATPASMPVSRPSSTASTVSTRSTL ISGSSNPSSLARSSSSISSQPASSSSRTSDWVRSQNRALEPYMSGALRTAYVTPPSSR ASSNGTVSTG" ORIGIN 1 tctaacgacg cttccgctgc cgctgctgct atcagcaaca acgacatcgc aaaatcttca 61 agtgacggag tactaagtag tatggctgtc acttttaaac gagccctcgg ggcccggcct 121 aaacagccgc ccccgaggga aacaacacaa aaacaaaaac ctccacgacc gcccaccccg 181 gagttaatca aaaatattcc acctcccccg cccaacgggg atgacgatat agtggtatcc 241 tacagtgcca aagagggggt ctccggcctg cctgagctat ccaccgttag gcagccggat 301 gagacaaaca cagcatttag tgtcccccca ctcaaccaga gggaaatcag ggatgctaaa 361 gaaccgctgc ctggcaccat attggaaatg tgggacggag agatctacca ctacggcttg 421 tacgtggagc ggggtttggt gcttggggtg cacaaaccac cagcggctat tagcctcgca 481 aaggttgaac taacaccact gtctctgtac tggagaccag tgtacacccc tcagtacctc 541 atatccccgg aaacactcaa aaagctacat ggagagacat tcccttatac ggcctttgat 601 aacaactgtt acgccttctg ttgttgggtc ttggatctaa acgactcttg gctcagcagg 661 aggatgattc agagaacaac tggcttcttc agaccctacc aggactggaa caggaaacct 721 ctccccacta tggatgattc caaattgaaa aaggtggcta atatagtcct gtgtgctttg 781 tcatcactat tcaccaggcc cattaaggac ataataggaa aactaaggcc cttaaacata 841 ctcaacatac tagcttcctg cgactggact ttcgcaggag tagtggaatc cctaattctc 901 cttgcagaac tcttcggagt tttctggaca cccccagatg tgtctgcgat gatcgccccc 961 ttactaggtg attacgaact acagggacct gaagatctcg ctgtagaact cgtaccagta 1021 gtaatggggg ggataggttt ggttctaggt ttcaccaagg agaagattgg caagatgctg 1081 tcatccgccg cgtccaccct cagagcttgt aaagaccttg gagcatatgg gctagaaatc 1141 ctgaagttgg tcatgaaatg gttcttcccg aagaaaaacg aggcaagtga acttgcaatg 1201 gtgagatcca ttgaggacgc agtgctggac ctcgaagcaa ttgaaaacaa tcacatgacc 1261 accctgctca aagacaaaga cagtttggca acctacatga agactctgga tcttgaagag 1321 gagaaagcta ggaaactctc caccaaatcc gcttctcctg atattgtggg cacaatcaat 1381 tcacttctgg cacggattgc agctgcccgt tccctggtgc accgggcaaa agaagagctt 1441 tccagtaggc caagacccgt tgttgttatg atatcaggaa agccagggat agggaagacc 1501 catcttgcca gagatttggc aaagaaagtt gcagccaccc tcacaggaga ccagagggtg 1561 ggcctcatcc cacggaatgg tgtcgaccat tgggatgcat acaaaggtga gagagtcgtc 1621 ctttgggatg actatggaat gagtaacccc attcatgacg cccttaggct acaagaactt 1681 gctgacactt gccccctaac attaaattgt gatagaattg agaacaaagg aaaggttttt 1741 gacagtgatg ccataattat tacaactaat ttggctaacc cggcaccact ggactatgtt 1801 aactttgaag catgttcgag gcgtatcgac ttccttgtgt acgctgatgc ccccgacgtt 1861 gaaaaggcaa aacgcgactt cccagggcaa cctgacatgt ggaaggatgc ttttagacct 1921 gacttctcac acataaagtt aatgttggct cctcagggtg gttttgataa gaacggcaac 1981 accccacatg gaaaaggtgt catgaaaacc ctcacatctg gctccctcgt tgcccgtgct 2041 tcaggactcc tccacgaaag actggacgag tacgagttgc aagggccaac acccacaacc 2101 ttcaatttcg accaaaacaa ggtgttcgcc tttaggcagc tcgccgctga aaataaatac 2161 gggctgatgg acaccatgag agtgggaagc cagctcaaga atgtcaaaac tgtgtcagag 2221 ctcaaacagg cactcaagaa cattgcaatt agaaggtgcc agatagtcta cagtggtctc 2281 acatactcac ttgaatctga tggcaaaggt aatgtaaggg ttgagaaggt gcaaagtcca 2341 gctgtgcaga ccaacaatga gctaactggc gcactacacc atctgaggtg cgctaggatt 2401 agatattatg ttaagtgtgt tcaggaagct ttgtattcca tcatccaaat tgctggggcc 2461 gcgtttgtca ccacgcgcat tgcacggcgc atgaacatac aaaacctctg gtccagacca 2521 caggtggagg atgaggaaga gaccaccagc aaagacgggt gcccaaaacc aaaggatgag 2581 gaggagtttg tcatctcgtc tgaagacatc aaagtcgaag gcaagaaggg aaagaacaag 2641 tctggccgtg gcaagaaaca cacagccttt tcgagtaaag gtcttagtga tgaggagtac 2701 gatgagtata agagaattag agaagaaaga aatggtaagt actccataga agaatacctc 2761 caggacagag acaagtacta tgaggaggtg gccatagcca gggctaccga agaggacttc 2821 tgtgaggaag aagaagccaa gattcgtcag aggattttca gaccaacaag gaagcaacgc 2881 aaggaggaga gggcttcact cggactggtt acaggctcag aaatcaggaa aaggaacccg 2941 gatgacttca aacccaaagg aaaactgtgg gctgatgatg acaggagtgt cgattacaat 3001 gaaaagctca gttttgaggc ccccccaagc atctggtcga gaatagtcaa ctttggatca 3061 ggttggggct tctgggtctc accaagcctt tttgtaacat ccacccatgt catacctcaa 3121 ggggcacaag aatttttcgg tgtttccatc aaacagatcc aaattcacaa gtcgggtgaa 3181 ttctgccgac taagattccc aaaaccaatt agaactgatg tgacaggtat gatcctggag 3241 gagggggccc ctgaagggac tgtggccaca ctgctcataa agaggccaac tggagagctg 3301 atgccactgg cagctagaat gggtacccat gcaactatga ggatccaggg tcgaactgtc 3361 ggggggcaga tggggatgct cctgacggga tccaacgcca agagcatgga tttgggtacc 3421 acaccaggtg actgtggatg cccatacata tacaaaagag gaaatgacta cgtagtcatc 3481 ggggtccaca cagctgccgc ccgcggaggg aacactgtca tctgtgcaac acaaggaagt 3541 gagggcgagg ctgtgcttga aggtggcgat aacaaaggca cctattgtgg cgccccaatc 3601 ctaggtccag gaaatgcccc caaactcagt actaaaacca aattctggag gtcctcaatg 3661 gcaccactcc cacctggcac atatgaacca gcttacctcg gaggcaaaga ccccagagta 3721 aaaggtggcc cctcattaca gcaagttatg agagaccaac tgaaaccatt tacagaaccc 3781 agaggtaagc caccaaaacc cagtgtacta gaagcagcca aaaagacaat cattaatgtc 3841 cttgagcaaa caatagaccc accccaaaaa tggacgttcg cacaggcgtg cgcatccctc 3901 gacaaaacaa cctctagtgg ctacccgcac cacgtgcgga agaatgaaca ttggaatggg 3961 gaatctttta caggaaaatt ggctgatcag gcttcaaaag ctaacctgat gtttgaggaa 4021 ggtaaacaca tgacaccagt ctacacagga gccctcaagg atgagttagt caaaactgat 4081 aaaatatatg gcaagatcaa gaagaggttg ctatggggtt cagatctggc aaccatgatc 4141 cgctgcgctc gagcgttcgg agggttaatg gatgaattca aggctcactg tgtcacactc 4201 cccatcaggg tagggatgaa catgaatgag gatggcccca tcatttttga gaaacactct 4261 agatacacct accattatga tgcagactac tctcggtggg actcaacaca gcagagagct 4321 gttttagctg cagccctgga gatcatggta aaattttccc cagaaccaca cctggcccag 4381 atcgttgcag aggatctact gtctcccagc gtgatggacg tgggcgattt caaaatatca 4441 atcactgaag gactcccctc tggggtgcct tgcacctcac aatggaattc tattgctcat 4501 tggctcctca cgctttgtgc actctctgag gtaacagatt tgtctcctga catcatccaa 4561 gcaaactcac tcttctcttt ctatggtgac gatgaaattg tgagcacaga catcagatta 4621 gatccagaaa agctgacagc taaactaaaa gagtatggtc tcaagccaac ccgtcctgac 4681 aagactgaag ggcctctggt catttctgag gacttagatg gtctgacctt cttacggagg 4741 actgtgaccc gtgacccagc aggttggttt ggaaaattgg aacaaagctc aatacttaga 4801 cagatgtatt ggaccagggg ccccaaccat gaggatcccg ctgaaacaat gataccacac 4861 tcccaaagac ccatacagtt gatgtcccta ttaggtgaag ctgcattaca tggcccatca 4921 ttctacagca aaatcagcaa attggtcatc tcagagttaa aagaaggtgg catggacttt 4981 tacgtgccaa ggcaagagcc aatgtttcga tggatgaggt tctcagactt gagcacgtgg 5041 gagggcgatc gcaatctggc tcccaatttt gtgaatgaag atggcgtcga atgacgccgc 5101 tccatctaat gatggtgcag ccggtctcgt accagaggtc aacaatgaga ccatggcact 5161 tgaaccggtg gctggggctt caatagccgc cccactcacc ggtcaaaata atgttataga 5221 cccctggatt agattaaact ttgtgcaagc tcccaatgga gagtttacag tttcaccccg 5281 caattcgcct ggggaagtcc tactaaactt ggaattaggc cctgaactaa atccatattt 5341 ggcacacctt tccagaatgt acaatggtta tgcaggtgga gttgaggtgc aagtactact 5401 ggctgggaac gcgttcacgg ctggaaaact ggtattcgcc gcagttcccc ctcattttcc 5461 attagaaaac ataagccctg gtcaaataac catgttccct catgtaatta ttgatgttag 5521 gactttagaa ccagtcctat tgcctcttcc agatgttagg aacaatttct ttcactacaa 5581 tcagcaaaac gaaccgagga tgaggcttgt ggcaatgctc tatacccccc ttaggtctaa 5641 tggttctggt gatgatgtat ttactgtctc ctgtagagtg cttactcgac cctctcctga 5701 ttttgatttc aattatttgg taccccctac agttgaatct aaaactaaac ccttcacact 5761 ccccatcttg accatagggg agttaaccaa ttccagattc cctgtgccta tagatgaact 5821 ctacactagc cccaatgaga gtttggtggt acaaccccag aacgggagat gcgcgctgga 5881 tggggagttg cagggtacta ctcagctcct ccccacggcg atctgctcgt tcaggggtcg 5941 gattaatcag aaagtgagtg gagagaacca tgtttggaat atgcaagtca ccaacattaa 6001 cggaacccct tttgatccaa cagaggatgt tccagctcct ctaggtacac cagatttctc 6061 tggcaagctc tttggcgtcc taagccagag ggaccatgat aatgcctgta ggagccatga 6121 tgcagtgatt gcaactaatt ctgctaaatt taccccaaaa ttgggcgcta tacaaattgg 6181 cacatgggaa caagatgatg tacacatcaa ccaacccacc aaatttactc cagttggctt 6241 gtttgaaagt gaaggtttta atcagtggac actccctaat tattctggag ccttaacact 6301 caacatgggg ttggcccccc ctgtggcccc cacatttcct ggcgagcaaa ttcttttctt 6361 cagatcccac attcctctta aaggaggtgt ggcagaccca gttattgatt gtctcttgcc 6421 ccaagagtgg atccaacatc tttatcagga gtcagcccct tcacaaacag atgtagcact 6481 gatcagattc acaaatccag acacagggcg tgtcctattt gaagcaaaat tgcacaggag 6541 tggctacatc acagtggcca acactggtag cagaccaatt gtggtgccag ctaatggtta 6601 cttcaggttt gactcttggg ttaatcagtt ttattctctc gcccccatgg gaactgggaa 6661 tgggcgcaga agggtgcagt aatggctgga gctttcatag caggtcttgc tggtgatata 6721 gtcaccaatg gtattggctc actcgtgaac gctggggcca atgcaataaa ccaaaaagta 6781 gactttgaaa acaataagca actacagcag gcatccttca atcatgacaa agagatgctg 6841 caagctcaaa ttcaagccac caaacagcta caggctgata tgattgcaat cagacaaggg 6901 gtgttgaccg cgggcggctt ctcccccact gatgcagcaa gaggtgcagt caacgcaccc 6961 atgacacagg tcttggactg gaacgggact agacattggg cccccggagc catgaaaaca 7021 actgctttct ccggtgggtt caccagtgct tctcatgcca ggaccgttga cctgactagg 7081 aagacatcag ccacaccagc ctctatgcct gtctctaggc ccagttctac tgcctctact 7141 gtttccaccc gttctacctt gattagtgga tcctctaatc cttcttctct agctaggagt 7201 tcttccagta tttcttccca acctgcttcc tcatcctctc ggactagtga ttgggtacgt 7261 agccaaaaca gagcactgga gccttatatg agcggggcgc tgcgtacagc ctacgtgaca 7321 cctccatcca gtagggcttc tagcaatggc acagtctcaa ccgggc //