Typing tool
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Typing tool
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Complete norovirus genomes
| KM198492 | GII.12 | |
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| GII.P33 |
ORF1: 82..5094
ORF2: 5075..6682
ORF3: 6682..7366
LOCUS KM198492 7366 bp RNA linear VRL 13-NOV-2014
DEFINITION Norovirus Hu/GII/30448/2010/VNM nonstructural polyprotein and
capsid protein VP1 genes, complete cds; and capsid protein VP2
gene, partial cds.
ACCESSION KM198492
VERSION KM198492.1
KEYWORDS .
SOURCE Norovirus Hu/GII/30448/2010/VNM
ORGANISM Norovirus Hu/GII/30448/2010/VNM
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7366)
AUTHORS Cotten,M., Petrova,V., Phan,M.V., Rabaa,M.A., Watson,S.J.,
Ong,S.H., Kellam,P. and Baker,S.
TITLE Deep sequencing of norovirus genomes defines evolutionary patterns
in an urban tropical setting
JOURNAL J. Virol. 88 (19), 11056-11069 (2014)
PUBMED 25056894
REFERENCE 2 (bases 1 to 7366)
AUTHORS Cotten,M.L., Petrova,V., Phan,M.V.T., Rabaa,M.A., Watson,S.J.,
Kellam,P. and Baker,S.
TITLE Direct Submission
JOURNAL Submitted (13-JUL-2014) Virus Genomics, The Wellcome Trust Sanger
Institute, Hinxton CB10 1SA, United Kingdom
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. 2.4.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7366
/organism="Norovirus Hu/GII/30448/2010/VNM"
/mol_type="genomic RNA"
/isolate="Hu/GII/30448/2010/VNM"
/host="Homo sapiens"
/db_xref="taxon:1527001"
/country="Viet Nam"
/collection_date="29-Jan-2010"
/note="genotype: GII"
CDS 82..5094
/note="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="AII02604.1"
/translation="MAVTFKRALGARPKQPPPRETTQKQKPPRPPTPELIKKIPPPPP
NGDDDIVVSYSAKEGVSGLPELSTVRQPDETNTAFSVPPLNQRENRDAKEPLPGTILE
MWDGEIYHYGLYVERGLVLGVHKPPAAISLAKVELTPLSLYWRPVYTPQYLISPETLK
KLHGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTGFFRPYQDWNRKPLPTMD
DSKLKKVANIVLCALSSLFTRPIKDIIGKLRPLNILNILASCDWTFAGVVESLILLAE
LFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPVVMGGIGLVLGFTKEKIGKMLS
SAASTLRACKDLGAYGLEILKLVMKWFFPKKDEANELAMVRSIEDAVLDLEAIENNHM
TTLLKDKDSLATYMKTLDLEEEKARKLSTKSASPDIVGTINSLLARIAAARSLVHRAK
EELSSRPRPVVVMISGKPGIGKTHLARDLAKKVAATLTGDQRVGLIPRNGVDHWDAYK
GERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRIENKGKVFDSDAIIITTNLAN
PAPLDYVNFEACSRRIDFLVYADAPDVEKAKRDFPGQPDMWKDAFRPDFSHIKLMLAP
QGGFDKNGNTPHGKGVMKTLTSGSLVARASGLLHERLDEYELQGPTPTTFNFDQNKVF
AFRQLAAENKYGLMDTMRVGSQLKNVKTVSELKQALKNIAIRRCQIVYSGLTYSLESD
GKGNVRVEKVQSPAVQTNNELTGALHHLRCARIRYYVKCVQEALYSIIQIAGAAFVTT
RIAKRMNIQNLWSRPQVEDKEETTSKDGCPKPKDEEESVISSEDIKVEGKKGKNKSGR
GKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDKYYEEVAIARATEEDFC
EEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPDDFKPKGKLWADDDRSVDY
NEKLSFEAPPSIWSRIVNFGSGWGFWVSPSLFVTSTHVIPQGAQEFFGVSIKQIQIHK
SGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKRPTGELMPLAARMGTHATMRI
QGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAARGGNTV
ICATQGSEGEAVLEGGDNKGTYCGAPILGPGNAPKLSTKTKFWRSSTAPLPPGTYEPA
YLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAAKKTIINVLEQTIDPPQ
KWTFAQACASLDKTTSSGYPHHVRKNEHWNGESFTGKLADQASKANLMFEEGKHMTPV
YTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMDELKAHCVTLPIRVG
MNMNEDGPIIFEKHSRYTHHYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQIVA
EDLLSPSVMDVGDFKISITEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQA
NSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLR
RTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPAETMIPHSQRPIQLMSLLGEAALH
GPSFYSKISKLVISELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPNFVNEDG
VE"
CDS 5075..6682
/note="ORF2"
/codon_start=1
/product="capsid protein VP1"
/protein_id="AII02605.1"
/translation="MKMASNDAAPSNDGAAGLVPEVNNETMALEPVAGASIAAPLTGQ
NNVIDPWIRLNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKLVFAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQQNEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
TVESKTKPFTLPILTIGELTNSRFPVPIDELYTSPNESLVVQPQNGRCALDGELQGTT
QLLPTAICSFRGRINQKVSGENHVWNMQVTNINGTPFDPTEDVPAPLGTPDFSGKLFG
VLSQRDHDNACRSHDAVIATNSAKFTPKLGAIQIGTWEQDDVHINQPTKFTPVGLFES
EGFNQWTLPNYSGALTLNMGLAPPVAPTFPGEQILFFRSHIPLKGGVADPVIDCLLPQ
EWIQHLYQESAPSQTDVALIRFTNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG
YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
CDS 6682..>7366
/note="ORF3"
/codon_start=1
/product="capsid protein VP2"
/protein_id="AII02606.1"
/translation="MAGAFIAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLQQA
SFNHDKEMLQAQIQATKQLQADMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG
TRHWAPGAMKTTAFSGGFTSASHARTVDLTRKTSATPASMPVSRPSSTASTVSTRSTL
ISGSSNPSSLARSSSSISSQPASSSSRTSDWVRSQNRALEPYMSGALRTAYVTPPSSR
ASSNGTVSTV"
ORIGIN
1 tctaacgacg cttccgctgc cgctgctgct atcagcaaca acgacatcgc aaaatcttca
61 agtgacggag tactaagtag tatggctgtc acttttaaac gagccctcgg ggcccggcct
121 aaacagccgc ccccgaggga aacaacacaa aaacaaaaac ctccacgacc gcccaccccg
181 gagttaatca aaaagattcc acctcccccg cccaacgggg atgacgatat agtggtatcc
241 tacagtgcca aagagggggt ctccggcctg cctgagctat ccaccgtcag gcagccggat
301 gagacaaaca cagcatttag tgtcccccca ctcaaccaga gggaaaacag ggatgctaaa
361 gaaccgctgc ctggcaccat attggaaatg tgggacggag agatctacca ctacggcttg
421 tacgtggagc ggggtttggt gcttggggtg cacaaaccac cagcggctat tagcctcgca
481 aaggttgaac taacaccact gtctctgtac tggagaccag tgtacacccc tcagtacctc
541 atatccccgg aaacactcaa aaagctacat ggagagacat tcccttatac ggcctttgat
601 aacaactgtt acgccttctg ttgttgggtc ttggatctaa acgactcttg gctcagcagg
661 aggatgattc agagaacaac tggcttcttc agaccctacc aggactggaa caggaaacct
721 ctccccacta tggatgattc caaattgaaa aaggtggcta atatagtcct gtgtgctttg
781 tcatcactat tcaccaggcc cattaaggac ataataggaa aactaaggcc cttaaacata
841 ctcaacatac tagcttcctg cgactggact ttcgcaggag tagtggaatc cctaattctc
901 cttgcagaac tcttcggagt tttctggaca cccccagatg tgtctgcgat gatcgccccc
961 ttactaggtg actacgaact acagggacct gaagatctcg ctgtagaact cgtaccagta
1021 gtaatggggg ggataggttt ggttctaggt ttcaccaagg agaagattgg caagatgctg
1081 tcatccgccg cgtccaccct cagagcttgt aaagaccttg gagcatatgg gttagaaatc
1141 ctgaagttgg tcatgaaatg gttcttcccg aagaaagacg aggcaaatga acttgcaatg
1201 gtgagatcca ttgaggacgc agtgctggac ctcgaagcaa ttgaaaacaa tcacatgacc
1261 accctgctca aagacaaaga cagtttggca acctacatga agactctgga tcttgaagag
1321 gagaaagcta ggaaactctc caccaaatcc gcttctcctg atattgtggg cacaatcaat
1381 tcacttctgg cacggattgc agctgcccgt tccctggtgc accgggcaaa agaagagctt
1441 tccagtaggc caagacccgt tgttgttatg atatcaggaa agccagggat agggaagacc
1501 catcttgcca gagatttggc aaagaaagtt gcagccaccc tcacaggaga ccagagggtg
1561 ggcctcatcc cacggaatgg tgtcgaccat tgggatgcat acaaaggtga gagagtcgtc
1621 ctttgggatg actatggaat gagtaacccc attcatgacg cccttaggct acaagaactt
1681 gctgacactt gccccctaac attaaattgt gatagaattg agaacaaagg aaaggttttt
1741 gacagtgatg ccataattat tacaactaat ttggctaacc cggcaccact ggactatgtt
1801 aactttgaag catgttcgag gcgtatcgac ttccttgtgt acgctgatgc ccccgacgtt
1861 gaaaaggcaa aacgcgactt cccagggcaa cctgacatgt ggaaggatgc ttttagacct
1921 gacttctcac acataaagtt aatgttggct cctcagggtg gttttgataa gaacggcaac
1981 accccacatg gaaaaggtgt catgaaaacc ctcacatctg gctccctcgt tgcccgtgct
2041 tcaggactcc tccacgaaag actggacgag tacgagttgc aagggccaac acccacaacc
2101 ttcaatttcg accaaaacaa ggtgttcgcc tttaggcagc tcgccgctga aaataaatac
2161 gggctgatgg acaccatgag agtgggaagc cagctcaaga atgtcaaaac tgtgtcagag
2221 ctcaaacagg cactcaagaa cattgcaatt agaaggtgcc agatagtcta cagtggtctc
2281 acatactcac ttgaatctga tggcaaaggt aatgtaaggg ttgagaaggt gcaaagtcca
2341 gctgtgcaga ccaacaatga gctaactggc gcactacacc atctgaggtg cgctaggatt
2401 agatattatg ttaagtgtgt tcaggaagct ttgtattcca tcatccaaat tgctggggcc
2461 gcgtttgtca ccacgcgcat tgcaaagcgc atgaacatac aaaacctctg gtccagacca
2521 caggtggagg ataaggaaga gaccaccagc aaagacgggt gcccaaaacc aaaggatgag
2581 gaggagtctg tcatctcgtc tgaagacatc aaagtcgaag gcaagaaggg aaagaacaag
2641 tctggccgtg gcaagaaaca cacagccttt tcgagtaaag gtcttagtga tgaggagtac
2701 gatgagtata aaagaattag agaagaaaga aatggtaagt actccataga agaatacctc
2761 caggacagag acaagtacta tgaggaggtg gccatagcca gggctactga agaggacttc
2821 tgtgaggaag aagaagccaa gattcgtcag aggattttca gaccaacaag gaaacaacgc
2881 aaggaggaga gggcttcact cggactggtt acaggctcag aaatcaggaa aaggaacccg
2941 gatgacttca aacccaaagg aaaactgtgg gctgatgatg acaggagtgt cgattacaat
3001 gaaaagctca gttttgaggc ccccccaagc atctggtcga gaatagtcaa ctttggatca
3061 ggttggggct tctgggtctc accaagcctt tttgtaacat ccacccatgt catacctcaa
3121 ggggcacaag aatttttcgg tgtttccatc aaacagatcc aaattcacaa gtcgggtgaa
3181 ttctgccgac taagattccc aaaaccaatt agaactgatg tgacaggtat gatcctggag
3241 gagggggccc ctgaagggac tgtggccaca ctgctcataa agaggccaac tggagagctg
3301 atgccactgg cagctagaat gggtacccat gcaactatga ggatccaggg tcgaactgtc
3361 ggggggcaga tggggatgct cctgacggga tccaacgcca agagcatgga tttgggtacc
3421 acaccaggtg actgtggatg cccatacata tacaaaagag gaaatgacta cgtagtcatc
3481 ggggtccaca cagctgccgc ccgcggaggg aacactgtca tctgtgcaac acaaggaagt
3541 gagggcgagg ctgtgcttga aggtggcgac aacaaaggca cctattgtgg cgccccaatc
3601 ctaggtccag gaaatgcccc caaactcagt actaaaacca aattctggag gtcctcaaca
3661 gcaccactcc cacctggcac atatgaacca gcttacctcg gaggcaaaga ccccagagta
3721 aaaggtggcc cctcattaca gcaagttatg agagaccaac tgaaaccatt tacagaaccc
3781 agaggtaagc caccaaaacc cagtgtacta gaagcagcca aaaagacaat cattaatgtc
3841 cttgagcaaa caatagaccc accccaaaaa tggacgttcg cacaagcgtg cgcatccctc
3901 gacaaaacaa cctctagtgg ctacccgcac cacgtgcgga agaatgaaca ttggaatggg
3961 gaatctttca caggaaaatt ggctgatcag gcttcaaaag ctaacctgat gtttgaggaa
4021 ggtaaacaca tgacaccagt ctacacagga gccctcaagg atgagttagt caaaactgat
4081 aaaatatatg gcaagatcaa gaagaggttg ctatggggtt cagatctggc aaccatgatc
4141 cgctgcgctc gagcgttcgg agggttaatg gatgaactca aggctcactg tgtcacactc
4201 cccatcaggg tagggatgaa catgaatgag gatggcccca tcatttttga gaaacactct
4261 agatacaccc accattatga tgcagactac tctcggtggg actcaacaca gcagagagct
4321 gttttagctg cagccctgga gatcatggta aaattttccc cagaaccaca cctggcccag
4381 atcgttgcag aggatctcct atctcccagc gtgatggacg tgggcgattt caaaatatca
4441 atcactgaag gactcccctc tggggtgcct tgcacctcac aatggaattc tattgctcat
4501 tggctcctca cgctttgtgc actctctgag gtaacagatt tgtctcctga catcatccaa
4561 gcaaactcac tcttctcttt ctatggtgac gatgaaattg tgagcacaga catcaaatta
4621 gatccagaaa agctgacagc taaactaaaa gagtatggtc tcaagccaac ccgtcctgac
4681 aagactgaag ggcctctggt catttctgag gacttagatg gtctgacctt cttacggagg
4741 actgtgaccc gtgacccagc aggttggttt ggaaaattgg aacaaagctc aatacttaga
4801 cagatgtatt ggaccagggg ccccaaccat gaggatcccg ctgaaacaat gataccacac
4861 tcccaaagac ccatacagtt gatgtcccta ttaggtgaag ctgcattaca tggcccatca
4921 ttctacagca aaatcagcaa attggtcatc tcagagttaa aagaaggtgg catggacttt
4981 tacgtgccaa ggcaagagcc aatgtttcga tggatgaggt tctcagactt gagcacgtgg
5041 gagggcgatc gcaatctggc tcccaatttt gtgaatgaag atggcgtcga atgacgccgc
5101 tccatctaat gatggtgcag ccggtctcgt accagaggtc aacaatgaga ccatggcact
5161 tgaaccggtg gctggggctt caatagccgc cccactcacc ggccaaaata atgttataga
5221 cccctggatt agattaaact ttgtgcaagc tcccaatgga gagtttacag tttcaccccg
5281 caattcgcct ggggaagtcc tactaaactt ggaattaggc cctgaactaa atccatattt
5341 ggcacacctt tccagaatgt acaatggtta tgcaggtgga gttgaggtgc aagtactact
5401 ggctgggaac gcgttcacgg ctggaaaact ggtattcgcc gcagttcccc ctcattttcc
5461 attagaaaac ataagccctg gccaaataac catgttccct catgtaatta ttgatgttag
5521 gactttagaa ccagtcctat tgcctcttcc agatgttagg aacaatttct ttcactacaa
5581 tcagcaaaac gaaccgagga tgaggcttgt ggcaatgctc tatacccccc ttaggtctaa
5641 tggttctggt gatgatgtat ttactgtctc ctgtagagtg cttactcgac cctctcctga
5701 ttttgatttc aattatttgg taccccctac agttgaatct aaaactaaac ccttcacact
5761 ccccatcttg accatagggg agttaaccaa ttccagattc cctgtgccta tagatgaact
5821 ctacactagc cccaatgaga gtttggtggt acaaccccag aacgggagat gcgcgctgga
5881 tggggagttg cagggtacta ctcagctcct ccccacggcg atctgctcgt tcaggggtcg
5941 gattaatcag aaagtgagtg gagagaacca tgtttggaat atgcaagtca ccaacattaa
6001 cggaacccct tttgatccaa cagaggatgt tccagctcct ctaggtacac cagacttttc
6061 tggcaagctc tttggcgtcc taagccagag ggaccatgat aatgcctgta ggagccatga
6121 tgcagtgatt gcaactaatt ctgctaaatt taccccaaaa ttgggcgcta tacaaattgg
6181 cacatgggaa caagatgatg tacacatcaa ccaacccacc aaatttactc cagttggctt
6241 gtttgaaagt gaaggtttta atcagtggac actccctaat tattctggag ccttaacact
6301 caacatgggg ttggcccccc ctgtggcccc cacatttcct ggcgagcaaa ttcttttctt
6361 cagatcccac attcctctta aaggaggtgt ggcagaccca gttattgatt gtctcttgcc
6421 ccaagagtgg atccaacacc tttatcagga gtcagcccct tcacaaacag atgtagcact
6481 gatcagattc acaaatccag acacagggcg tgtcctattt gaagcaaaat tgcacaggag
6541 tggctacatc acagtggcca acactggtag cagaccaatt gtggtgccag ctaatggtta
6601 cttcaggttt gactcttggg ttaatcagtt ttattctctc gcccccatgg gaactgggaa
6661 tgggcgcaga agggtgcagt aatggctgga gctttcatag caggtcttgc tggtgatata
6721 gtcaccaatg gtattggctc actcgtgaac gctggggcca atgcaataaa ccaaaaagta
6781 gactttgaaa acaataagca actacagcag gcatccttca atcatgacaa agagatgctg
6841 caagctcaaa ttcaagccac caaacagcta caggctgata tgattgcaat cagacaaggg
6901 gtgttgaccg cgggcggctt ctcccccact gatgcagcaa gaggtgcagt caacgcaccc
6961 atgacacagg tcttggactg gaacgggact agacattggg cccccggagc catgaaaaca
7021 actgctttct ccggtgggtt caccagtgct tctcatgcca ggaccgttga cctgactagg
7081 aagacatcag ccacaccagc ctctatgcct gtctctaggc ccagttctac tgcctctact
7141 gtttccaccc gttctacctt gattagtgga tcctctaatc cttcttctct agctaggagt
7201 tcttccagta tttcttccca acctgcttcc tcatcctctc ggactagtga ttgggtacgt
7261 agccaaaaca gagcactgga gccttatatg agcggggcgc tgcgtacagc ctacgtgaca
7321 cctccatcca gtagggcttc tagcaatggc acagtctcaa ccgtgc
//