Typing tool
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Typing tool
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Complete norovirus genomes
| KM036381 | GI.4 | |
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| GI.P4 |
ORF1: 1..1413
ORF2: 1397..3031
ORF3: 3031..3657
LOCUS KM036381 3780 bp RNA linear VRL 01-JUL-2015
DEFINITION Norovirus 14-H-2/2014/GI.P4/GI.4 nonstructural protein gene,
partial cds; and major capsid protein and minor structural protein
genes, complete cds.
ACCESSION KM036381
VERSION KM036381.1
KEYWORDS .
SOURCE Norovirus 14-H-2/2014/GI.P4/GI.4
ORGANISM Norovirus 14-H-2/2014/GI.P4/GI.4
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3780)
AUTHORS Wu,F.-T., Chen,H.-C., Chang,C.-Y., Wu,C.-Y. and Lu,C.-T.
TITLE GI.P4/GI.4 and GII.6 in one patient
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3780)
AUTHORS Wu,F.-T., Chen,H.-C., Chang,C.-Y., Wu,C.-Y. and Lu,C.-T.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2014) Centers for Disease Control department of
health Taiwain, R.O.C., Center for Research and Diagnostics, No.
161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..3780
/organism="Norovirus 14-H-2/2014/GI.P4/GI.4"
/mol_type="genomic RNA"
/isolate="14-H-2/2014/GI.P4/GI.4"
/isolation_source="stool specimen from a 26-year female
with diarrhea"
/host="Homo sapiens"
/db_xref="taxon:1631304"
/country="Taiwan"
/collection_date="Jan-2014"
CDS <1..1413
/note="ORF1"
/codon_start=1
/product="nonstructural protein"
/protein_id="AJW67376.1"
/translation="VYEPAYLGGRDPRVKGGPSLQQVLRDQLKPFAEPRGRMPEPGLL
EAAVETVTSMLEQTMDTPTPWSFSDACQSLDKTTSSGHPYHKRKNDDWNGTSFVGELG
EQAAHANNMYELGKSMKPLYTAALKDELVKPEKVYQKIKKRLLWGADLSTVIRAARAF
GPFCDAIKPHVIKLPIKVGMNSIEDGPMIYAEHAKYKNHFDADYSAWDSTQNRQIMTE
SFAIMCRLTASPELASVVAKDLLAPSEMDVGDYIIRVKEGLPSGFPCTSQVNSINHWL
ITLCAMSEVTGLSPDVIQSQSYFSFYGDDEIVSTDIDFDPARLTQVLKEYGLRPTRPD
KSEGPIILRRQVDGLVFLRRTISKDAAGFQGRLDRGSIERQLWWTRGPNHDDPSETLI
PHPQRKVQLISLLGEASLHGEKFYRKISSKVIQEIKTGGLEMYVPGWQAMFRWMRFHD
LGLWTGDRNLLPEFVNDDGV"
CDS 1397..3031
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AJW67377.1"
/translation="MMMASKDATPSADGATGAGQLVPEVNTADPIPIDPVAGSSTALA
TAGQVNLIDPWIINNFVQAPQGEFTISPNNTPGDVLFDLQLGPHLNPFLSHLSQMYNG
WVGNMRVRVVLAGNAFTAGKVIICCVPPGFQSRTLSIAQATLFPHVIADVRTLDPVEV
PLEDVRNVLYHNNDTQPTMRLLCMLYTPLRTGGASGGTDSFVVAGRVLTCPGPDFNFL
FLVPPTVEQKTRPFTVPNIPLKYLSNSRIPNPIEGMSLSPDQTQNVQFQNGRCTIDGQ
PLGTTPVSVSQLCKFRGRITSGQKVLNLTELDGSPFMAFAAPAPAGFPDLGSCDWHIE
MSKIPNSSTESNPIVVNSVKPNSQQFVPHLSSITLDDNVSSGGDYIGTIQWTSPPSDS
GGANTNFWKIPNYGSSLAEASQLAPAVYPPGFNEVIVYFMASIPGPNQSGSPNLVPCL
LPQEYITHFISEQAPIQGEAALLHYVDPDTNRNLGEFKLYPGGYLTCVPNSSSTGPQQ
LPLDGVFVFASWVSRFYQLKPVGTAGPARGRLGVRR"
CDS 3031..3657
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="AJW67378.1"
/translation="MAQAIIGAIAASAAGSALGAGIQAGAEAALQAQRYQQDLTLQQN
SFNHDKEMLGYQVEMSNKLLAKNLNTRYSLLQAGGLSPFDAARAVAGAPVTRLVDWGG
VRVAAPQSFATTLRFGNFMAVPLPAQPKQKPLASEGYSNPAYDPMQRTASWVQFQNSS
RTWSPYHRQALQTVWVTPPGFTFFFFVSTAPRGYFNTDRLPLFANLRR"
ORIGIN
1 gtttatgaac cagcatacct tgggggccgt gacccaaggg taaaaggtgg accttcccta
61 caacaagtcc tgcgtgacca gctgaaaccg tttgctgagc cacgaggtcg aatgccagaa
121 cctggtctac ttgaggcagc cgtcgaaact gtcacatcca tgcttgaaca aacaatggac
181 acaccaaccc cttggtcttt ctctgatgca tgtcagtcac tcgacaaaac cacaagttcg
241 gggcacccat accataaaag gaaaaatgat gattggaatg gaacttcatt tgttggggag
301 cttggagaac aggcggcaca tgccaacaac atgtatgagt taggcaagtc catgaaacca
361 ctttacactg cagccctaaa agatgagtta gttaagcctg agaaagtcta tcaaaagatc
421 aagaaaaggc tcctttgggg tgctgatctc tcaacagtta taagagctgc cagagccttt
481 ggaccatttt gtgatgccat aaagcctcat gtcattaaac tccccatcaa agttggtatg
541 aactccatag aagatggccc aatgatttat gcagaacatg caaagtataa gaatcatttt
601 gatgcagatt attcagcctg ggattctaca caaaatagac agatcatgac tgagtccttt
661 gcaatcatgt gccgcctcac ggcgtcacct gagttggcct ctgttgtagc caaagatcta
721 cttgcaccct cagaaatgga tgttggtgac tacatcatcc gtgtgaagga aggcttgcca
781 tcagggttcc cttgcacgtc acaggtgaat agtataaatc attggctaat cacattgtgt
841 gctatgtctg aagtcacagg cttatcaccc gatgtcatac aatcccagtc ttacttttct
901 ttctatggtg atgatgaaat agtctcaaca gatattgatt ttgaccccgc ccgcctcact
961 caagtgctta aagaatatgg attgagaccc actcgaccag acaagtcaga aggacccatc
1021 atacttagaa gacaggtgga tggccttgtt ttcttaagga ggacaatctc aaaagatgct
1081 gcgggcttcc aggggaggct ggataggggc tcaattgaaa ggcagctctg gtggactcga
1141 ggtcctaacc atgatgaccc cagtgagact ctaatcccac atccccagag gaaagttcag
1201 cttatatccc ttcttggtga ggcttccctc catggtgaga aattttacag gaaaatctcc
1261 agtaaagtta tacaggagat aaagactggt ggtttggaaa tgtatgtgcc aggctggcag
1321 gccatgttcc gctggatgcg cttccatgac ctcggattgt ggacaggaga tcgcaatctc
1381 ctgcccgaat tcgtaaatga tgatggcgtc taaggacgct acaccaagcg cagatggcgc
1441 cactggcgcc ggccagctgg taccggaggt taatacagct gaccctatac ccattgaccc
1501 tgtggctggc tcctctacag cacttgccac tgcaggccaa gttaatttga ttgatccctg
1561 gataatcaat aattttgtgc aagcccccca gggtgaattc acaatatccc caaacaatac
1621 ccccggtgat gtgctttttg atttgcagtt aggacctcat ttaaaccctt tcctctccca
1681 tctctctcag atgtacaatg gctgggtggg caacatgcga gtgcgtgttg tcttggctgg
1741 taatgctttc acggctggga aggttataat atgttgtgtc ccccctggct ttcaatctcg
1801 tactctttcc atagctcagg ctactttatt cccccacgtc attgctgatg ttaggaccct
1861 tgaccctgta gaagtgcccc ttgaagatgt caggaacgtg ttgtatcata ataatgacac
1921 ccaacccacc atgcgcctcc tttgcatgct gtacacccct ctccgcaccg ggggggcgtc
1981 tggtgggact gattctttcg tggtagctgg gcgtgtactt acttgcccag gccctgactt
2041 taacttctta ttcttggtcc ctcctacagt cgagcaaaag actcgccctt tcactgtgcc
2101 taatatccct ttgaagtatc tgtctaattc cagaatccca aaccccattg aaggcatgtc
2161 attgtcacct gatcagactc aaaatgtcca attccagaat ggcaggtgca caattgacgg
2221 tcaacccctc gggactacac ctgtctcggt tagccagtta tgtaagttta ggggtaggat
2281 tacatctgga cagaaggtgc tcaatttgac agagttggat ggttcacctt ttatggcctt
2341 tgctgcccct gcccctgcgg gcttcccaga ccttgggtcc tgtgattggc atattgagat
2401 gagtaaaatc ccaaattcta gcaccgagag taatccaata gtggtcaatt ctgtcaagcc
2461 caatagtcaa cagtttgtcc ctcacttgtc aagcatcacc cttgatgaca atgtttctag
2521 tgggggtgat tatattggta ctatacaatg gacctctcct ccttctgatt ctggcggagc
2581 caatacaaac ttttggaaaa tccctaacta tgggtctagc ttggctgaag cttcacagtt
2641 ggctcctgct gtctatccac ctggtttcaa tgaagtgatt gtgtatttta tggcatctat
2701 acctggcccc aatcaatctg ggtcccctaa cttggtgcca tgcctactcc cccaggaata
2761 tataacacat ttcattagtg agcaggcccc cattcagggt gaggctgcct tactccatta
2821 tgtggaccca gacaccaatc gtaatttggg tgagtttaaa ttgtatcctg gtggttattt
2881 aacctgtgtt cctaatagtt ctagtactgg acctcaacag cttcctcttg atggtgtttt
2941 tgtctttgct tcttgggtct ctagatttta tcaattaaag cctgtgggaa cagccggacc
3001 ggctagaggt aggcttggtg tccgtagata atggcccaag ccattatagg agccattgcc
3061 gcctctgcag ccggcagcgc cctgggtgct ggcatccagg ctggtgctga agctgcgtta
3121 caggcacaga gatatcaaca agatttgact ttgcagcaaa attcttttaa tcatgataaa
3181 gaaatgttag gttatcaagt ggaaatgtcc aataagttgt tagctaagaa tcttaatacc
3241 cgctattctc ttctccaggc gggtggcctc tcaccctttg atgcggctag ggctgtggct
3301 ggggcccctg tcaccaggtt ggtcgactgg ggtggagtgc gtgttgcagc accacaatca
3361 tttgccacca cattgagatt tggcaatttc atggcagtgc cgctcccagc ccagccaaag
3421 cagaagcccc ttgccagtga gggttattcc aaccccgctt atgaccctat gcagcgtaca
3481 gcttcttggg ttcaatttca aaattccagt cggacttggt ctccttacca taggcaggcc
3541 cttcagactg tgtgggtgac cccccctggc tttacctttt ttttttttgt ttctaccgcc
3601 cctcgggggt actttaatac agataggttg cctctgttcg caaacttgag gcgttaatgt
3661 tgtaataaga ttagtgagca tcctattcaa atttggcttt gtataatttg gttatatttg
3721 gcttttaatt ttgatttggt tgatgttaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//