Typing tool
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Typing tool
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Complete norovirus genomes
| KM036380 | GII.13 | |
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| GII.P16 |
ORF1: 1..5088
ORF2: 5075..6697
ORF3: 6697..7428
LOCUS KM036380 7435 bp RNA linear VRL 01-JUL-2015
DEFINITION Norovirus Hu/GII.P16/GII.13/New/Taipei/13-BA-1/2013/TW
nonstructural protein gene, partial cds; and major capsid protein
and minor structural protein genes, complete cds.
ACCESSION KM036380
VERSION KM036380.1
KEYWORDS .
SOURCE Norovirus Hu/GII.P16/GII.13/New/Taipei/13-BA-1/2013/TW
ORGANISM Norovirus Hu/GII.P16/GII.13/New/Taipei/13-BA-1/2013/TW
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7435)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Norovirus GII.P16/GII.13 recombinant variant
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7435)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Direct Submission
JOURNAL Submitted (20-JUN-2014) Centers for Disease Control department of
health Taiwain, R.O.C., Center for Research and Diagnostics, No.
161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..7435
/organism="Norovirus
Hu/GII.P16/GII.13/New/Taipei/13-BA-1/2013/TW"
/mol_type="genomic RNA"
/isolate="Hu/GII.P16/GII.13/New Taipei/13-BA-1/2013/TW"
/isolation_source="stool specimen from a 25-year female
with diarrhea"
/host="Homo sapiens"
/db_xref="taxon:1631331"
/country="Taiwan"
/collection_date="May-2013"
CDS <1..5088
/note="ORF1"
/codon_start=1
/product="nonstructural protein"
/protein_id="AJW67373.1"
/translation="ASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQP
APRDNSQKPPRPPTPELVKRIPPPPPNGEEEEPVIRYEVKSGISGLPELTTVPQPDVA
NTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMA
KVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWL
NRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKIK
PLNILNILATCDWTFAGVVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLA
VELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKK
EEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTKS
ASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVAR
KVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPL
TLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAK
RDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASG
LLHERMDEFELQGPTVTTFNFDRNRIAAFRQLAAENKYGLVDTMRVGNQLKGVKTMEE
LKQAIKNVIIKRCRIIYGGSTYDLESDGKGRVLVEKVKNTSVQTNNELAGALHHLKHA
RIRYYVKCVQEAVYSIIQIAGAAFVTTRIVRRMNIQELWSKPPLDQNESEAKEEAPKS
EDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSI
EEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERVTLGLVTGSE
IRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFI
TSTHVIPAGITEAFGVPIKQIQVHKSGEFCRFRFPKPIRSDVTGMILEEGAPEGTVAT
VLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCP
YIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGA
PKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKP
PRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGET
FTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKVYGKIKKRLLWGSDLSTMI
RCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQ
RAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKISINEGLPSGVPCTSQWN
SIAHWLLTLCALSEVTKLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLKEYGL
KPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHED
PNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFR
WMRFSDLSTWEGDRNLAPNFVNEDGVE"
CDS 5075..6697
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AJW67374.1"
/translation="MASNDAAPSNDGAASLVPEAINETMPLEPVAGASIAAPVAGQTN
IIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGGVE
VQVLLAGNAFTAGKILFAAIPPNFPVDMISPAQITMLPHLIVDVRTLEPIMIPLPDVR
NVFYHFNNQPQPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFIYLVPPSV
ESKTKPFTLPILTISELTNSRFPIPIEQLYTAPNENNVVQCQNGRCTLDGELQGTTQL
LSSAVCSYRGRTVANSGDNWDQNLLQLTYPSGASYDPTDEVPAPLGTQDFSGILYGVL
TQDNVSEGTGEAKNAKGVYISTTSGRFTPKIGTIGLHSITENVHPNQQSRFTPVGVAQ
NENTPFQQWVLPHYAGALALNTNLAPAVAPTFPGEQLLFFRSRVPCVQGLRGQDAFID
CLLPQEWVNHFYQEAAPSQADVALIRYVNPDTGRTLFEAKLHRSGFITVSHTGNYPLV
VPPNGHFRFDSWVNQFYSLAPMGTGNGRRRVQ"
CDS 6697..7428
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="AJW67375.1"
/translation="MAGAFIAGLAGDMLTSAVGSLTSAGANAINQKLSFDYNKQLQNA
SFQHDKEMLQAQIDATKKLQSEMIAIKHGVLTAGGFSPADAARGAVNAPMTRVLDWSG
TRYYAPNSVQTTSYSGQFTPSPVHRAQVKSPSNSSQRTAAPSSIRSLSTQSTSLGSTS
SGGSSTTSSSSRTADWVQQQRALSPYMQGALQTAYVTPPSSRASSMSSVSTVPKGVLD
SWTPVFNTRRQPLFAHLRKRGESQV"
ORIGIN
1 gcgtctaacg acgctaccgt tgccgttgct tgcaacaaca acaacgacaa ggaaaaatct
61 tcaggtgaag gcttattcac aaatatgtct tccaccttaa agaaagccct cggggcccgg
121 cccaaacagc ctgccccgag ggacaactca caaaagcccc caagaccacc aactcccgag
181 ttggttaaga ggataccccc tcccccacct aatggagaag aagaagaacc agtcattagg
241 tatgaggtta agagtggaat ctctggcctg cccgagctca caacagtccc tcaaccggat
301 gtggccaaca cggcattcag tgtcccaccg ctgagtttga gagaaaacag ggaggccaag
361 gaaccgctga caggggcaat attagagatg tgggatggag agatatacca ctatggcctg
421 tacgtggaga aaggcttagt gttgggtgtg cacaaaccac ctgcagctat aagcatggca
481 aaagtggagc tgacgccgtt gtcattgtac tggcgtgtgg tctacacccc ccaatacctc
541 atctcccctg aaactctcag gaggctcaac ggagaggcat tcccttacac tgcctttgac
601 aacaactgct atgccttttg ctgctgggta ttagacctca atgactcatg gcttaacagg
661 aggatggtgc aaagaacaac aggcttcttc agaccttacc aagagtggaa cagaaaaccc
721 ctgcccacta tggatgactc caaaatcaag aaggtggcaa acatattcct gtgttcattg
781 tccacgttgt tcaccagacc tataaaagac ctcataggga aaattaagcc attaaacatc
841 ttgaacatcc tggcaacgtg tgactggaca ttcgccggag tagtggagtc tctgatatta
901 cttgctgaac tctttggagt tttctggaca cccccagatg tgtctgctat gatcgctcct
961 ttacttggag actacgagtt gcaagggcca gaagaccttg ctgttgagct cgtacctgta
1021 gtaatgggag ggattggttt ggtgttggga ttcaccaaag agaaaattgg aaaaatgttg
1081 tcctcagcag catcaacgct cagggcttgt aaagatcttg gtgcctatgg cttagagata
1141 ctcaaattgg tcatgaagtg gttcttccca aagaaagaag aggccaatga gttagccatg
1201 gtgagagcta tagaggatgc tgtactggat cttgaggcaa tagaaaataa tcacatgaca
1261 actctgttga aggacaaaga cagcctagca acctacatga aaacactaga catggaggag
1321 gaaaaagcca gaagattgtc cacaaaatct gcatcccctg acatagttgg gacgatcaac
1381 gccctgctgg ctcgaatagc agcggctagg tcactagtcc acagggccaa ggaggagtta
1441 tctagcagga taagaccagt ggttgttatg atatctggca aaccagggat aggcaaaact
1501 catttggcca gggaggtggc aagaaaggtg gcatccactc tcacagggga tcaaagagtc
1561 gggctcatac cgagaaacgg tgtggaccat tgggatgcat acaaaggtga gagagtcgtg
1621 ctgtgggacg actatggcat gagcaacccc attcatgatg ctctgcgcat acaagaattg
1681 gctgatacgt gtccccttac cttaaattgt gacagaattg aaaataaggg aaaagttttt
1741 gacagtgaag tcataataat cacaacaaac cttgccaatc cagctccact tgactatgtc
1801 aactttgagg cctgttccag gagaattgac ttcctggtgt acgccgaggc accagaagta
1861 gaaaaagcaa aacgagactt tcctggtcaa ccagatatgt ggaaggacgc cttcaagtcg
1921 gacttttcac acatcaagtt gcaacttgca cctcagggcg gctttgacaa gaatggcaac
1981 accccacatg ggaaaggagt gatgaagacc ctcaccaccg gttccctgat cgcccgtgca
2041 tcaggcttac tgcatgagag gatggatgaa tttgagctcc aaggccccac agtcaccacc
2101 ttcaattttg accggaacag aatcgctgca ttcagacaat tggctgcaga aaacaagtat
2161 ggattggtgg acaccatgag agttggcaac caattaaaag gggtgaaaac catggaagaa
2221 ctcaaacaag caatcaagaa cgtgatcatc aagaggtgcc ggatcatcta cggcggctcc
2281 acgtatgacc ttgaatctga tggcaaaggc agagttctgg tggaaaaggt caagaacacc
2341 tctgtacaga ccaacaacga gttggccgga gccctgcatc acctcaaaca tgcccgaatc
2401 aggtactatg tcaaatgtgt gcaagaagca gtctactcta ttatacaaat cgccggcgct
2461 gcgtttgtca ccacacgcat agtacgccgc atgaacatac aagagctttg gtcgaagcca
2521 ccattagacc aaaatgaatc agaggctaag gaagaggccc ccaagtcaga agatgacgag
2581 ttcatcatat cttctaagga catcaaggag gaaggaaaga agggcaaaaa caaaactggc
2641 cgtggcaaga aacatactgc attctctagc aagggcttga gcgatgagga gtatgacgag
2701 tacaagagga taagagaaga gagaaatggg aagtactcta tagaggagta tcttcaagac
2761 agagacaggt actatgagga actcgccatc gccaaggcca cggaagaaga cttctgtgag
2821 gaggaggaga tcaaaatccg tcagaggatc ttccgtccca ccaggaagca aaggaaggaa
2881 gagagggtca cactagggct agtaactggt tcagaaatca gaaaaagaaa ccctgatgac
2941 ttcaaaccta aagggaaact gtgggctgat gacaacagaa gtgttgacta caatgagaaa
3001 ctggactttg aggccccccc aagcatatgg tctaggattg tgagttttgg ttctggttgg
3061 ggcttctggg tgtcaccaag cctgttcata acatcaactc atgtaatccc tgcaggcata
3121 acagaggcat ttggagtccc catcaaacaa atccaggtcc acaaatcagg tgaattttgc
3181 cggttcagat tcccaaaacc aattagatca gatgtgacag gaatgatctt ggaagaaggt
3241 gcgcctgagg gcaccgtggc aaccgtgctc atcaaacgcc ctaccggaga gctcatgccc
3301 cttgcagcca gaatgggaac acacgcaacc atgaaaattc agggccgcat ggttggcgga
3361 cagatgggta tgttgctcac tggttcaaat gctaaaggaa tggatttggg aacaactcct
3421 ggtgattgtg gctgtcccta catctacaaa aggggcaatg actatatagt cattggggtg
3481 cacacagcag cagcccgtgg tggaaacacc gtcatctgtg ccacacaggg aagtgagggt
3541 gaggcaactc ttgagggtgg agatgacaaa ggaacatact gtggggcacc cattctaggc
3601 cctggggggg caccaaaatt gagcaccaaa accaaatttt ggaggtcatc gaacacgcct
3661 cttccaccag ggacgtatga gcctgcctat ctcggtggcc gtgacccgcg tgttaagggt
3721 gggccctcct tgcagcaggt aatgagagac cagttgaagc catttaccga gcccaggggt
3781 aaacctccaa gaccaagtgt gttggaagca gccaaacaaa ccatcatcaa tgtcctcgaa
3841 caaaccctgg accctccaca aaaatggaca tacgcacagg cgtgtgcttc acttgacaaa
3901 accacctcca gcgggcatcc ccaccacgtc cgaaagaatg aattctggaa tggtgagacc
3961 ttcactggta aattagcaga ccaagcatca aaagcaaatc taatgtttga ggaagggaaa
4021 cacatgacac cagtgtatac agcagccctc aaggatgagc tggtcaagac tgacaaagtc
4081 tatggaaaga tcaagaagag actgctctgg ggctctgact tgtccaccat gatccggtgc
4141 gccaggtcct ttggtgggct catggatgag atgaaagcac actgcatatc actcccagtc
4201 cgagttggca tgaacatgaa tgaagatggt ccaataatat ttgagaagca ctccagatac
4261 aagtatcact atgatgcaga ttactcccgc tgggactcaa cacaacagag ggcagtgcta
4321 gcagcagcct tggagatcat ggtcaggttc tctgcagagc cacaattggc acaaatagtc
4381 gctgaggatc tgctggcccc cagtgtggta gatgtaggag actttaaaat ttcaataaat
4441 gaagggctcc cctctggtgt accatgcact tctcagtgga attccatcgc acactggctg
4501 ctaaccctct gcgccttgtc tgaagtcacc aaactgtccc ctgacattgt acaggcaaat
4561 tccatgttct cattttacgg tgatgacgag attgtcagca ccgatataaa attggaccct
4621 gaaaagttaa ccaccaaatt gaaggagtac ggcctgaaac caactcgccc agacaaaacc
4681 gaggggcccc tgatcatcag tgaggatctg aacggactca ctttcctccg gaggacggtg
4741 actcgtgacc cagctggctg gtttggaaaa ttggaccaaa gctcaatatt gaggcagatg
4801 tactggacta gaggaccaaa tcatgaagac cccaatgaga caatgatacc ccactctcaa
4861 agacccatac agctcatggc actgcttggt gaggcctccc ttcacggacc ctctttctac
4921 agcaaaatta gtaagttggt cataactgaa ctcaaagaag gtgggatgga cttttacgtg
4981 ccaaggcagg aacccatgtt caggtggatg aggttttctg acttgagcac gtgggagggc
5041 gatcgcaatc tggctcccaa ttttgtgaat gaagatggcg tcgaatgacg ccgctccatc
5101 gaatgatggt gcagctagtc tcgtaccaga ggccattaat gagactatgc cattggaacc
5161 cgttgctggc gcatctattg ctgccccagt ggcgggacag actaacataa ttgacccctg
5221 gataagaaca aattttgtgc aagcccctaa tggagagttt acagtatcac cgagaaattc
5281 ccctggagag attctattaa atttagagtt aggaccagac ttgaatcctt atttggccca
5341 tctatcaagg atgtacaatg ggtatgctgg aggtgttgag gtgcaagtgc ttcttgctgg
5401 gaacgcgttc acagcaggaa agatattatt tgcagcaatc ccacccaact ttcctgtaga
5461 tatgattagc ccagctcaaa ttactatgct tccccatttg attgtagatg ttaggacatt
5521 ggaacctatt atgataccct tacctgatgt taggaatgtg ttctatcatt ttaataatca
5581 accccaacct aggatgagat tagtggctat gctctatacc ccattgagat ctaatggttc
5641 aggagatgat gtctttactg tgtcttgtag agtgttgact aggccaaccc ctgattttga
5701 attcatttac ctagtgcctc cctctgtaga gtccaaaact aaaccattca cacttccaat
5761 attgaccatt tctgaactaa ccaactcccg gtttcccatc ccaattgagc aactgtacac
5821 ggccccaaat gagaataatg ttgtacagtg tcaaaatgga aggtgcacct tggatggaga
5881 gcttcagggc accacccagc tgttatcaag tgcagtttgc tcttacaggg gcaggactgt
5941 ggctaacagt ggggacaatt gggaccagaa tttgctccag ttgacctacc caagcggtgc
6001 aagctatgac cccactgatg aagtaccagc acccttgggc acccaagatt tcagtgggat
6061 attgtatggg gtgttaaccc aggacaatgt aagtgagggt acaggggagg ccaaaaatgc
6121 taagggagta tacatatcca ccaccagtgg aagattcacc ccaaaaattg ggacaattgg
6181 attgcattca ataactgaaa atgtgcaccc caatcagcaa tcacggttca cccccgttgg
6241 agtcgctcag aatgaaaaca cccccttcca gcaatgggtt ctaccacact atgcaggtgc
6301 tctcgctcta aacaccaatt tggcacccgc tgttgccccg actttccctg gcgagcaatt
6361 actgttcttc aggtcccgtg tcccatgtgt tcaaggtctg cgggggcagg atgctttcat
6421 agattgtctc ctacctcaag agtgggtgaa ccatttttat caagaggctg ctccctccca
6481 agcagacgtt gccctcatca ggtatgtcaa ccctgatact ggtcgcacgc tgtttgaggc
6541 caaattgcac aggtcaggtt ttattactgt atcacacact ggtaactacc ctcttgtggt
6601 ccccccgaat ggtcatttca ggtttgattc ttgggttaac caattctact cactcgcccc
6661 catgggaact ggcaatgggc gtagaagagt tcaataatgg caggagcatt tatagctggt
6721 ctagctggtg acatgctgac ttctgctgtt ggttcactga cctctgcagg agccaatgcc
6781 atcaatcaga aattgagttt tgattacaat aaacaactcc aaaatgcatc ctttcaacat
6841 gataaggaaa tgttgcaggc ccagattgat gctacaaaga agctccaatc agaaatgatt
6901 gcaattaagc atggggtttt gaccgcgggc ggcttttccc cagctgatgc agccagaggg
6961 gcagtcaacg ccccaatgac tcgagtgttg gattggtcag ggacacgcta ctacgctcca
7021 aattctgtgc aaaccaccag ttattctggg caattcaccc cctcgccagt ccatcgggcg
7081 caggtgaagt ccccttccaa ttcatctcag cggactgcag ctccaagcag tatccgcagc
7141 ctgtcaaccc aatcaacttc tttaggctcc acctcctctg gggggtcctc tacaacctcc
7201 tctagttcga ggacagcaga ctgggtgcaa caacaaaggg ctcttagccc gtacatgcag
7261 ggagccctgc agacggcata cgtcacaccg ccgtctagta gggcttccag tatgagctct
7321 gtctcaacag tgcccaaagg ggttttggac tcctggacac ctgtgtttaa cacacgcagg
7381 cagccgctgt ttgcacacct caggaagagg ggggagtcac aggtttagtg aaaag
//