Typing tool
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Typing tool
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Complete norovirus genomes
| KM036379 | GII.5 | |
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| GII.P40 |
ORF1: 1..4833
ORF2: 4820..6436
ORF3: 6436..7146
LOCUS KM036379 7146 bp RNA linear VRL 01-JUL-2015
DEFINITION Norovirus Hu/GII.P22/GII.5/Taoyuan/12-BB-4/2012/TW nonstructural
protein gene, partial cds; major capsid protein gene, complete cds;
and minor structural protein gene, partial cds.
ACCESSION KM036379
VERSION KM036379.1
KEYWORDS .
SOURCE Norovirus Hu/GII.P22/GII.5/Taoyuan/12-BB-4/2012/TW
ORGANISM Norovirus Hu/GII.P22/GII.5/Taoyuan/12-BB-4/2012/TW
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7146)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Emergence of Novel Recombinant Norovirus Variant GII.22/GII.5 in
Taiwan, 2012
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7146)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Direct Submission
JOURNAL Submitted (19-JUN-2014) Centers for Disease Control department of
health Taiwain, R.O.C., Center for Research and Diagnostics, No.
161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..7146
/organism="Norovirus
Hu/GII.P22/GII.5/Taoyuan/12-BB-4/2012/TW"
/mol_type="genomic RNA"
/isolate="Hu/GII.P22/GII.5/Taoyuan/12-BB-4/2012/TW"
/isolation_source="stool specimen from a 10-year male with
diarrhea"
/host="Homo sapiens"
/db_xref="taxon:1631333"
/country="Taiwan"
/collection_date="Mar-2012"
CDS <1..4833
/note="ORF1"
/codon_start=1
/product="nonstructural protein"
/protein_id="AJW67370.1"
/translation="QDDAVEGVPTVATVDVPPTHNTAYSVPPLDQREKIEAKEPLTGS
ILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISFARIELTPLSLYWRIVYTPPYLIAPE
TLRKLHGESFPYTAFDNNCYSFCCWVLDLNDSWLNRKFVSRTTGFYRPYQEWNRKPLP
TMDEGKLKKVANVLLCGLSGLFTRPIKDLIGKLRPLNILNIITNCDWTFPGIVEAFIL
LAELFGVFWTPPDISTFIASLLGDYEMQGPEDIAVEVVPVILGGIGMVLGFTKERIGR
LLSSAASSLRACREIGNYGIEVVKLVMKWFFPTKDETNEMDMVRAIEDAVLDFEAIQN
NHMTALLKDKNSLATFLRELDMEEEKARKLSTKSASPDIIGTINALLARIAAARSLVH
KAKEEMSSRMRPVVIMISGRPGIGKTHLARDLAKKMAATLSGDQRVGLVPRNGVDHWD
AYKGERIVLWDDYGMSNPVTDALRLQELADTCPLTLNCDRIENKGKVFDSDTIIITTN
LANPAPLDYVNFEACSRRIDFLVYADSPSVDKAKRDFPGQPDMWKDAFKPDFSHIKLQ
LAPQGGFDKNGNTPHGKGVMKTLTTHSLIARATGLLHERLDEFDLQGPELPVYNFDHN
RVAAFRRLAADNKYGLMETIKVGNKLKSVKTLEQLKDALKDISIMPCRIVYNSMAYDL
DSNGSGRVSVKKVVDHKIQTNNELNSALNNLRGARVRYYVKCVQEMVYSLLQIAGAAF
VTSRMTRRLNVSSIWARPEKQVEATEEPPSPPTEDWTITPANAVQEGKKGKNKSGRGK
KHTAFSSKGLSDEEYDEYKRIREERQGKYSIEEYLQDRDRYYEELAIAKATEENFCEE
EEIKIRQRVFRPTRKQRKEERATLGLVTGSEIRKRNPDDFKPRGKLWADDDRSVNYNE
KIDFEAPPSLWSRIVNFGSGWGFWVSSNLLITSTHVIPPNMTEAFGVPISQIQVHRSG
EFCKMRFPKAIRPDVSGMILEEGAPEGTVVTILIKRTTGELMPLAARMGTHATMKIQG
KMLGGQMGMLLTGSNAKNMDLGTIPGDCGCPYVYKRGNDWVVIGVHTAAARGGNTVIC
ATQGPDGEATLEGRDNHGTYCGAPILGPGSAPKLSTKTKFWRSSNAPLPPGTYEPAYL
GGKDPRVKGGPSLQQVMREQLKPFTAPRGKPPRPAILEAAKETICNVLEQVIDPPQKW
SYAQACASLDKTTSSGHPHHMKKNDNWNGESFTGVLADQASKANLMFEQGKHMQPVYT
AALKDELVKTSKIYEKIKKRLLWGSDLGTMIRCARAFGGLMDEMKANCVNLPIRVGMN
MNEDGPIIFEKHSKYKYHYDADYSRWDSTQQRHILGAALEIMVRFSAEPELAQIVSED
LLAPSVVDVGDFKITINEGLPSGVPCTSQWNSISHWLITLCAISEISGLSPDVVQTNS
CFSFYGDDEIVSTDIKLDPMKLTNKLKEYGLIPTRPDKTEGPLIIKENLDGLTFLRRD
VCRDPAGWYGKLDQSSIMRQLFWTKGPNHDDPNETMIPHSQRPIQLMSLLGEAALHGP
VFYKKVSKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE
"
CDS 4820..6436
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AJW67371.1"
/translation="MASNDATPSNDGAAGLVPESNNEAMALEPVVGASLAAPVTGQTN
IIDPWIRTNFVQAPNGEFTVSPRNSPGEILVNLELGPELNPYLAHLARMYNGYAGGME
VQVMLAGNAFTAGKIIFAAVPPYFPVENLSPSQITMFPHVIIDVRTLEPVLLPMPDVR
STLFHFNQKDEPKMRLVAMLYTPLRSNGSGDDVFTVSCRILTRPSPEFDFTYLVPPTV
ESKTKPFTLPVLTLGELSNSRFPLSIDEMVTSPNESIVVQPQNGRVTLDGELLGTTQL
QACNICSIRGKVTGQVPNEQHMWNLEITNLNGTQFDPTDDVPAPLGVPDFAGEVFGVL
SQRNRGESNPANRAHDAVVATYSDKYTPKLGLVQIGTWNTNDVENQPTKFTPIGLNEV
ANGHRFEQWTLPRYSGALTLNMNLAPAVAPLFPGERLLFFRSYVPLKGGFGNPAIDCL
VPQEWVQHFYQESAPSLGDVALVRYVNPDTGRVLFEAKLHKGGFLTVSSTSTGPVVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRFQ"
CDS 6436..>7146
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="AJW67372.1"
/translation="MAGAFIAGLAGDVLSNGLGSLINAGANAINQRAEFDFNRQLQQN
SFNHDKEMLNAQIQATKQLQADMIAIKQGVLAAGGFSPTDAARGAVNAPMTQALDWSG
TRYWAPGSMKTTSYSGKFVSMNPVRQVEFPQPKKSAAIPSSASSVSSGRTNFTNSTQS
TVVGTSSVTPSRGSSAPSTLSRATTRTSNWVEEQNRNLEPYMRGALQTTFVTPPSSRA
SSNGTVSTVPKGVLDSWTP"
ORIGIN
1 caggatgacg cggttgaagg ggtgcccacc gtcgccacgg ttgatgttcc ccccacacac
61 aacaccgctt acagtgtccc ccccctggat cagagggaaa agattgaagc gaaggagccc
121 ttgacaggtt cgatacttga gatgtgggac ggtgagatct accactatgg tctctacgtg
181 gagaagggct tggttcttgg tgtgcacaaa cctccagctg ccataagctt tgcacgcata
241 gaactcactc ccctctccct atactggaga atagtctaca ctccacctta cctgatagcc
301 ccagaaaccc taaggaagct ccacggggag tcattcccat atacagcctt tgacaacaat
361 tgctactcct tctgctgctg ggtcctggac ctgaacgatt cttggctcaa cagaaaattt
421 gtgtcaagga caacgggttt ctacagaccc taccaagagt ggaatagaaa gcctttgcca
481 accatggatg aaggaaagct caagaaagtg gccaatgtgc ttctatgtgg tctctctggg
541 cttttcacta ggcccatcaa ggatctcata gggaagttga ggccactaaa catactaaac
601 atcatcacca attgcgactg gaccttcccc ggaattgtgg aggctttcat actgcttgca
661 gagctctttg gagttttctg gacaccacca gacatttcca ccttcatagc ttcacttctg
721 ggtgactatg aaatgcaggg ccctgaggac atcgcggttg aagtcgtacc ggtgatcctc
781 ggcggcatag gtatggtact tggattcacc aaagaaagaa ttggccggtt gttgagctct
841 gccgcttcct cacttagagc atgcagggag atcggcaact atgggataga ggtagtgaag
901 ctggtgatga aatggttttt ccccaccaaa gatgagacaa atgagatgga tatggtgagg
961 gcaatagagg atgctgttct tgactttgaa gccatacaga acaatcacat gacagcattg
1021 cttaaagaca aaaacagcct tgcaaccttc ctcagggagc tagatatgga agaggaaaag
1081 gcgcggaagc tatcaacaaa atctgcgtcc ccagatatta tcggcaccat aaacgccctt
1141 ctagccagaa ttgccgctgc taggtcccta gtccacaagg ccaaggaaga aatgtcatct
1201 aggatgcgtc ctgttgtcat catgatctcc ggccgacccg ggatagggaa gacgcatctg
1261 gcccgcgacc tggctaagaa gatggcggcg accctctcag gtgatcagag agtggggctc
1321 gtgccgagga atggtgttga ccattgggac gcatataaag gagagaggat cgtgctctgg
1381 gacgattatg gaatgagcaa ccctgtgact gatgcgctgc ggctccagga gcttgccgac
1441 acatgccccc taacgctcaa ctgtgataga atagaaaata agggaaaagt gtttgacagt
1501 gacactataa tcatcaccac taatttggcc aatcctgctc ctctagatta tgtcaacttt
1561 gaggcttgct cccgccgaat cgacttcctt gtctatgcag actccccctc ggtggacaag
1621 gcgaagagag acttccctgg tcaaccagac atgtggaagg atgcctttaa accggacttt
1681 tcacacataa aacttcagtt ggcaccacag ggaggctttg ataagaacgg gaacacccct
1741 catgggaaag gtgtcatgaa gacgctaacc acacactcac tcattgcccg cgccacgggc
1801 ctcctacatg agagattgga tgaatttgac ctgcagggac ccgagttgcc cgtgtacaat
1861 tttgaccaca acagggtggc tgctttcagg agactggcag ctgacaacaa gtatgggctt
1921 atggaaacca taaaggtggg taacaaattg aaaagcgtca agactctaga acaactcaag
1981 gacgctctaa aagacataag tatcatgcct tgcagaatag tctacaactc gatggcttac
2041 gatctcgatt cgaacggatc agggagagtc agtgtcaaaa aggttgtaga ccacaagatc
2101 cagaccaaca acgagctcaa ttccgccctc aacaatctgc gcggtgccag agtgagatac
2161 tatgttaaat gtgttcaaga gatggtatat tccctccttc aaattgctgg cgcagccttc
2221 gtcacttcaa gaatgacacg gaggttgaac gtcagcagca tttgggccag accagaaaaa
2281 caagtggagg ccactgagga acccccatcc cccccaactg aggattggac tataacccca
2341 gcaaatgcag tccaggaagg taaaaagggc aagaacaaga gcggcagagg caagaaacat
2401 accgccttct ccagtaaagg cctaagtgat gaggagtatg atgagtataa aagaatcaga
2461 gaagagagac aaggaaaata ctccatagaa gaataccttc aggataggga ccggtattat
2521 gaagaattgg ccatagccaa ggcaacagag gagaacttct gtgaggagga agaaataaaa
2581 atcagacaga gggtcttccg tccgaccagg aaacaacgca aggaagagag ggcaactctg
2641 ggactggtca caggtagtga aataaggaag aggaacccag atgacttcaa accaagagga
2701 aaattgtggg ccgatgatga ccgcagtgta aactacaatg agaaaataga ttttgaagcg
2761 cctcccagcc tttggtctcg aatagtcaac ttcggatcag gttggggttt ttgggtttct
2821 tccaacttgc tcatcacatc aacacatgtc atccccccga acatgactga ggcctttggt
2881 gtaccaataa gtcagataca agtacatagg agtggagagt tctgtaaaat gaggttcccc
2941 aaagctataa gacctgatgt ctcaggcatg atccttgagg aaggagctcc cgagggaacg
3001 gtggtgacca tactgatcaa gaggaccacc ggtgagctca tgccgctggc cgcccgaatg
3061 ggtacccacg ccaccatgaa aattcaaggg aaaatgcttg gaggccaaat gggcatgctc
3121 ctcacggggt ccaacgccaa gaacatggac ctcggtacca ttcctggaga ctgtggttgt
3181 ccctatgttt acaagagagg taatgactgg gtggttatag gggtgcatac cgcagccgcc
3241 agaggtggca acactgtgat ttgtgccact cagggtccag acggtgaggc cacgcttgag
3301 gggagagaca accacgggac ttactgtggg gcaccaatac ttggaccagg aagtgcacca
3361 aaactcagca ctaagactaa attctggagg tcatccaacg ccccactccc gcctggcact
3421 tatgagcccg cttacctagg cggaaaagac ccaagagtca aggggggacc atcactacag
3481 caagtcatga gggaacaact caaacctttc acagcccccc gagggaagcc gccacggccg
3541 gcgatcctgg aggctgctaa ggaaaccatc tgtaatgtac ttgagcaggt cattgaccca
3601 ccccaaaaat ggtcttatgc tcaggcctgt gcctctctgg acaaaacaac atccagtggc
3661 catccccacc atatgaaaaa gaatgacaac tggaacggag agtccttcac cggtgtgttg
3721 gctgaccaag cttccaaggc aaatctcatg tttgaacaag ggaaacacat gcaacctgtg
3781 tacactgccg ccctcaaaga cgagctcgtc aagactagca agatctatga gaaaattaag
3841 aagaggctcc tatggggttc agatctgggc acaatgatcc gctgtgctag ggcttttgga
3901 ggcctcatgg atgagatgaa agcaaattgt gtaaacttac caatcagagt tggcatgaac
3961 atgaatgaag atggacccat cattttcgag aaacattcaa agtacaagta ccattatgat
4021 gctgactact ctaggtggga ttcaacccaa cagagacata tcttgggggc tgcccttgag
4081 ataatggtta ggttctcagc tgaacctgaa ttggcccaaa ttgtatctga agatctccta
4141 gcccccagcg tggtggacgt tggcgacttc aagatcacca taaatgaagg tttaccctct
4201 ggagtgccgt gcacatcaca atggaactca atttcccact ggctaataac actatgtgcc
4261 atatcagaaa tttcagggct gtcgccagat gtggtacaaa caaactcctg tttctccttc
4321 tatggggatg atgagatagt cagcactgac attaagttag atcccatgaa attaactaac
4381 aagttgaagg agtatggact gatcccaaca agaccagaca agacagaggg gccactcata
4441 atcaaagaga accttgatgg cttgaccttt ctgaggaggg atgtgtgtcg ggacccagct
4501 ggttggtatg gaaaacttga tcaatcctca attatgagac aattgttttg gaccaagggg
4561 cccaaccatg acgatcccaa tgagacaatg attccacact cccagaggcc catacaacta
4621 atgtcattgc tgggggaggc agcattacac ggaccagttt tctacaagaa agtcagtaaa
4681 ttagttatca ctgagctcaa agagggtgga atggattttt acgtgccaag gcaagaacct
4741 atgtttaggt ggatgagatt ctctgacctc agcacttggg agggcgatcg caatcttgct
4801 cccgaaggtg tgaatgaaga tggcgtcgaa tgacgctact ccatcaaatg atggtgctgc
4861 cggcctcgtg ccagaaagta acaatgaggc tatggctctg gaacccgtgg tgggggcgtc
4921 tttagccgcc cctgtcactg gccaaactaa tataatagac ccctggatta gaactaattt
4981 tgtccaagcc cctaatggtg aattcacagt ttcccctaga aattcccctg gagagatatt
5041 ggtcaatttg gaattaggtc cagaactgaa cccttatctg gcacatttag ctaggatgta
5101 caatggttat gcgggtggta tggaggtgca agtgatgctc gcggggaacg cgttcactgc
5161 tggcaagatc atctttgccg ccgtgccacc ttactttcca gtggaaaatc ttagcccttc
5221 ccaaataaca atgttcccac atgtgattat cgatgttaga accttagaac ctgtactgct
5281 cccaatgcct gatgttagaa gcaccctatt ccactttaat caaaaggatg aacctaagat
5341 gagacttgtt gccatgctct acacccctct tcgttctaat ggctctggtg atgacgtttt
5401 cactgtctca tgtaggatcc tcactaggcc ctctcctgaa tttgatttca catacttggt
5461 accaccaaca gtggagtcaa agaccaagcc attcacacta cctgtgctga cattgggaga
5521 attgtccaat tctagattcc ctctctctat tgatgaaatg gtcaccagcc ctaatgagtc
5581 catagttgtt cagccacaga atggtagggt cacactagat ggggagttgt taggcacaac
5641 ccaactgcaa gcatgtaaca tttgttccat aagggggaaa gtgacaggac aggtccctaa
5701 tgaacaacac atgtggaacc tggagattac aaacctaaat gggacgcaat ttgaccctac
5761 agatgatgtc ccagcccctc ttggtgtgcc cgactttgca ggtgaggtct ttggtgtact
5821 cagccagaga aatagaggtg aaagcaatcc agcaaacagg gctcatgatg ctgttgtggc
5881 tacctacagt gataaataca cccctaaatt gggcttagtg caaattggga cttggaacac
5941 caacgatgtt gaaaaccagc caacaaaatt caccccaatt ggtttgaatg aggtcgccaa
6001 tggccatcga tttgaacagt ggaccttgcc taggtattct ggtgccctga cactaaatat
6061 gaatttagct cctgctgtgg ccccgctctt tcctggagag cgtctccttt tcttccgctc
6121 ttacgtccca ttaaaaggtg gatttggaaa ccctgctata gattgtctag tgcctcagga
6181 gtgggtccaa catttctatc aggaatctgc cccatctctg ggggatgtcg ccttagtcag
6241 gtacgtcaac ccagacaccg ggcgcgtcct ttttgaggcc aaactccaca aaggtgggtt
6301 cctgaccgtg tcaagcacta gcacagggcc tgttgtggtc ccagccaatg gttatttcag
6361 atttgattct tgggttaatc aattttactc tcttgccccc atgggaactg ggaatgggcg
6421 cagaaggttt cagtaatggc aggagctttt atagcaggtt tagcgggtga tgtgcttagt
6481 aatggcctcg gttcgctgat taatgccgga gccaatgcta tcaatcaaag agcagaattt
6541 gattttaata gacaattgca gcaaaattct tttaatcatg ataaggaaat gttaaatgcc
6601 caaattcaag caacaaaaca gttgcaggct gatatgatag caatcaaaca gggagtccta
6661 gctgctgggg gtttctcacc aactgatgca gccagaggag ctgtcaatgc acccatgacc
6721 caagcattag attggagtgg cactaggtat tgggcccctg gttcaatgaa gaccaccagc
6781 tattctggaa agtttgtgtc catgaatcct gttaggcagg ttgagttccc gcaacccaaa
6841 aagagtgcgg ccataccatc aagtgccagc tctgtgtctt ctggtaggac taatttcaca
6901 aattctactc aatcaactgt tgttggcact tcctcagtaa caccttctag gggttcttct
6961 gctccctcta ctctatcaag ggctacaacc agaacttcca attgggttga ggaacaaaac
7021 aggaatttgg aaccctacat gaggggtgcc ctccaaacaa catttgtcac ccccccttcc
7081 agccgggcat ctagcaacgg tacagtctca actgtaccaa aaggtgtttt ggactcctgg
7141 acacct
//