Typing tool
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Typing tool
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Complete norovirus genomes
| KM036378 | GII.5 | |
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| GII.P40 |
ORF1: 1..1719
ORF2: 1706..3322
ORF3: 3322..4098
LOCUS KM036378 4173 bp RNA linear VRL 01-JUL-2015
DEFINITION Norovirus Hu/GII.P22/GII.5/Kaohsiung/12-AV-1/2012/TW nonstructural
protein gene, partial cds; and major capsid protein and minor
structural protein genes, complete cds.
ACCESSION KM036378
VERSION KM036378.1
KEYWORDS .
SOURCE Norovirus Hu/GII.P22/GII.5/Kaohsiung/12-AV-1/2012/TW
ORGANISM Norovirus Hu/GII.P22/GII.5/Kaohsiung/12-AV-1/2012/TW
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 4173)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Emergence of Novel Recombinant Norovirus Variant GII.22/GII.5 in
Taiwan, 2012
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4173)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Direct Submission
JOURNAL Submitted (19-JUN-2014) Centers for Disease Control department of
health Taiwain, R.O.C., Center for Research and Diagnostics, No.
161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..4173
/organism="Norovirus
Hu/GII.P22/GII.5/Kaohsiung/12-AV-1/2012/TW"
/mol_type="genomic RNA"
/isolate="Hu/GII.P22/GII.5/Kaohsiung/12-AV-1/2012/TW"
/isolation_source="stool specimen from a 20-year female
with diarrhea"
/host="Homo sapiens"
/db_xref="taxon:1631332"
/country="Taiwan"
/collection_date="Mar-2012"
CDS <1..1719
/note="ORF1"
/codon_start=1
/product="nonstructural protein"
/protein_id="AJW67367.1"
/translation="MLLTGSNAKNMDLGTIPGDCGCPYVYKRGNDWVVIGVHTAAARG
GNTVICATQGPDGEATLEGRDNHGTYCGAPILGPGSAPKLSTKTKFWRSSNAPLPPGT
YEPAYLGGKDPRVKGGPSLQQVMREQLKPFTAPRGKPPRPAILEAAKETICNVLEQII
DPPQKWSYAQACASLDKTTSSGHPHHMKKNDNWNGESFTGVLADQASKANLMFEQGKH
MQPVYTAALKDELVKTSKIYEKIKKRLLWGSDLGTMIRCARAFGGLMDEMKANCVNLP
IRVGMNMNEDGPIIFEKHSKYKYHYDADYSRWDSTQQRHILGAALEIMVRFSAEPELA
QIVSEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWNSISHWLITLCAISEISGLSPD
VVQTNSCFSFYGDDEIVSTDIKLDPMKLTNKLKEYGLIPTRPDKTEGPLIIKENLDGL
TFLRRDVCRDPAGWYGKLDQSSIMRQLFWTKGPNHDDPNETMIPHSQRPIQLMSLLGE
AALHGPVFYKKVSKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPEGV
NEDGVE"
CDS 1706..3322
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AJW67368.1"
/translation="MASNDATPSNDGAAGLVPESNNEAMALEPVVGASLAAPVTGQTN
IIDPWIRTNFVQAPNGEFTVSPRNSPGEILVNLELGPELNPYLAHLARMYNGYAGGME
VQVMLAGNAFTAGKIIFAAVPPYFPVENLSPSQITMFPHVIIDVRTLEPVLLPMPDVR
STLFHFNQKDEPKMRLVAMLYTPLRSNGSGDDVFTVSCRILTRPSPEFDFTYLVPPTV
ESKTKPFTLPVLTLGELSNSRFPLSIDEMVTSPNESIVVQPQNGRVTLDGELLGTTQL
QACNICSIRGKVTGQVPNEQHMWNLEITNLNGTQFDPTDDVPAPLGVPDFAGEVFGVL
SQRNRGESNPANRAHDAVVATYSDKYTPKLGLVQIGTWNTNDVENQPTKFTPIGLNEV
ANGHRFEQWTLPRYSGALTLNMNLAPAVAPLFPGERLLFFRSYVPLKGGFGNPAIDCL
VPQEWVQHFYQESAPSLGDVALVRYVNPDTGRVLFEAKLHKGGFLTVSSTSTGPVVVP
ANGYFRFDSWVNQFYSLAPMGTGNGRRRFQ"
CDS 3322..4098
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="AJW67369.1"
/translation="MAGAVIAGLAGDVLSNGLGSLINAGANAINQRAEFDFNRQLQQN
SFNHDKEMLNAQIQATKQLQADMIAIKQGVLAAGGFSPTDAARGAVNAPMTQALDWSG
TRYWAPGSMKTTSYSGKFVSMNPVRQVEFPQPKKSAAIPSSASSVSSGRTNFTNSTQS
TVVSTSSVSPSRGSSAPSTLSRATTRTSNWVEEQNRNLEPYMRGALQTTFVTPPSSRA
SSNGTVSTVPKGVLDSWTPAFNTRRQPLFAYLRKKGESQV"
ORIGIN
1 atgctcctca cggggtccaa cgccaagaac atggacctcg gtactattcc tggagactgt
61 ggttgtccct atgtttacaa gagaggtaat gactgggtgg ttataggggt gcacaccgca
121 gccgccagag gtggcaacac tgtgatttgt gccactcagg gtccagacgg tgaggccacg
181 cttgagggga gagacaacca cgggacttac tgtggggcac caatacttgg accaggaagt
241 gcaccaaaac ttagcactaa gactaaattc tggaggtcat ccaacgcccc actcccgcct
301 ggcacttatg agcccgctta cctaggcgga aaagacccaa gagtcaaggg gggaccatca
361 ctacagcaag tcatgaggga acaactcaaa cctttcacag ccccccgagg gaagccccca
421 cgaccggcga tcctggaggc tgctaaggaa accatctgta atgtacttga gcagatcatt
481 gacccacccc aaaaatggtc ttatgctcag gcctgtgcct ctctggacaa aacaacatcc
541 agtggccatc cccaccatat gaaaaagaat gacaactgga acggagagtc cttcaccggt
601 gtgttggctg accaagcttc caaggcaaat ctcatgtttg aacaagggaa acacatgcaa
661 cctgtgtaca ctgccgccct caaagacgag ctcgtcaaga ctagcaagat ctatgagaaa
721 attaagaaga ggctcctatg gggttcagat ctgggcacaa tgatccgctg tgctagggct
781 tttggaggcc tcatggatga gatgaaagca aattgtgtaa acttaccaat cagagttggc
841 atgaacatga atgaagatgg acccatcatt ttcgagaaac attcaaagta taagtaccat
901 tatgatgctg actactctag gtgggattca acccaacaga gacatatctt gggggctgcc
961 cttgagataa tggttaggtt ctcagctgaa cctgaattgg cccaaattgt atctgaagat
1021 ctcctagccc ccagcgtggt ggacgttggt gacttcaaga tcaccataaa tgaaggttta
1081 ccctctggag tgccgtgcac atcacaatgg aactcaattt cccactggct aataacacta
1141 tgtgccatat cagaaatttc agggctgtcg ccagatgtgg tacaaacaaa ctcctgtttc
1201 tccttctatg gggatgatga gatagtcagc actgacatta agttagatcc catgaaatta
1261 actaacaagt tgaaggagta tggactgatc ccaacaagac cagacaagac agaggggcca
1321 ctcataatca aagagaacct tgatggcttg acctttctga ggagggatgt gtgtcgggac
1381 ccagctggtt ggtatggaaa acttgatcaa tcctcaatta tgagacaatt gttttggacc
1441 aaggggccca accatgacga tcccaatgag acaatgattc cacactccca gaggcccata
1501 caactaatgt cattgctggg ggaggcagca ttacacggac cagttttcta caagaaagtc
1561 agtaaattag ttatcactga gctcaaagag ggtggaatgg atttttacgt gccaaggcaa
1621 gaacctatgt ttaggtggat gagattctct gacctcagca cttgggaggg cgatcgcaat
1681 cttgctcccg aaggtgtgaa tgaagatggc gtcgaatgac gctactccat caaatgatgg
1741 tgctgccggc ctcgtgccag aaagtaacaa tgaggcaatg gctctggaac ccgtggtggg
1801 ggcgtcttta gccgcccctg tcactggcca aactaatata atagacccct ggattagaac
1861 taattttgtc caagccccta atggtgaatt cacagtttcc cctagaaatt cccctggaga
1921 gatattggtc aatttggagt taggtccaga actgaaccct tatctggcac atttagctag
1981 gatgtacaat ggttatgcgg gtggtatgga ggtgcaagtg atgctcgcgg ggaacgcgtt
2041 cactgctggc aagatcatct ttgccgccgt gccaccttac tttccagtgg aaaatcttag
2101 cccttcccaa ataacaatgt tcccacatgt gattatcgat gttagaacct tagaacctgt
2161 actgctccca atgcctgatg tcagaagcac ccttttccac tttaatcaaa aggatgaacc
2221 taagatgaga cttgttgcca tgctctacac ccctcttcgt tctaatggct ctggtgatga
2281 cgttttcact gtctcatgta ggattctcac taggccctct cctgaatttg atttcacata
2341 cttggtgcca ccaacagtgg agtcaaagac caagccattc acactacctg tgctgacatt
2401 gggagaattg tccaattcta gattccctct ctctattgat gaaatggtca ccagccctaa
2461 tgagtccata gttgttcagc cacagaatgg tagggtcaca ctagatgggg agttgttagg
2521 cacaacccaa ctgcaagcat gtaacatttg ttccataagg gggaaagtga caggacaggt
2581 ccctaatgaa caacacatgt ggaacctgga gattacaaac ctaaatggga cgcaatttga
2641 ccctacagat gatgtcccag cccctcttgg tgtgcccgac tttgcaggtg aggtctttgg
2701 tgtactcagc cagagaaata gaggtgaaag caatccagca aacagggctc atgatgctgt
2761 tgtggctacc tacagtgata aatacacccc taaattgggc ttagtgcaaa ttgggacttg
2821 gaacaccaac gatgttgaaa accagccaac aaaattcacc ccaattggtt tgaatgaggt
2881 cgccaatggc catcgatttg aacagtggac cttgcctagg tattctggtg ccctgacact
2941 aaatatgaat ttagctcctg ctgtggcccc gctctttcct ggagagcgtc tccttttctt
3001 ccgctcttac gtcccattaa aaggtggatt tggaaaccct gctatagatt gtctagtgcc
3061 tcaggagtgg gtccaacatt tctatcagga atctgcccca tctctggggg atgtggcctt
3121 agtcaggtac gtcaacccag acaccgggcg cgtccttttt gaggccaaac tccacaaagg
3181 tgggttcctg accgtgtcaa gcactagcac agggcctgtt gtggtcccag ccaatggtta
3241 tttcagattt gattcttggg ttaatcaatt ttactctctt gcccccatgg gaactgggaa
3301 tgggcgcaga aggtttcagt aatggcagga gctgtcatag caggtttagc aggtgatgtg
3361 cttagtaatg gcctcggttc gctgattaat gccggagcca atgctatcaa tcaaagagca
3421 gaatttgatt tcaataggca attgcagcaa aattctttta atcatgataa ggagatgtta
3481 aatgcccaaa ttcaagcaac aaaacagttg caggctgata tgatagcaat caaacaggga
3541 gtcctagctg ctgggggttt ctcaccaact gatgcagcca gaggagctgt caatgcaccc
3601 atgacccaag cattagattg gagtggcact aggtattggg cccctggttc aatgaagacc
3661 accagctatt ctggaaagtt cgtgtccatg aatcctgtta ggcaggttga gttcccgcag
3721 cccaaaaaga gtgcggccat accatcaagt gccagctctg tgtcttctgg taggactaat
3781 ttcacaaatt ctactcaatc aactgttgtc agcacttcct cagtatcacc ttctaggggt
3841 tcttctgctc cttctactct atcaagggct acaaccagaa cttccaattg ggttgaggaa
3901 caaaacagga atttggaacc ctacatgagg ggtgccctcc aaacaacatt tgtcaccccc
3961 ccttccagcc gggcatctag caacggtaca gtctcaactg taccaaaagg tgttttggac
4021 tcctggacac ctgcgtttaa cacccgcagg caaccgcttt tcgcttacct tcgcaagaag
4081 ggggagtcac aagtttagtg aaaagataat tagtgattga taattgatct ttaaaaaaaa
4141 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
//