Typing tool
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Typing tool
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Complete norovirus genomes
| KM036374 | GII.6 | |
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| GII.P7 |
ORF1: 1..1491
ORF2: 1472..3115
ORF3: 3115..3891
LOCUS KM036374 3974 bp RNA linear VRL 01-JUL-2015
DEFINITION Norovirus Hu/GII.P7/GII.6/New/Taipei/14-AG-3/2014/TW nonstructural
protein gene, partial cds; and major capsid protein and minor
structural protein genes, complete cds.
ACCESSION KM036374
VERSION KM036374.1
KEYWORDS .
SOURCE Norovirus Hu/GII.P7/GII.6/New/Taipei/14-AG-3/2014/TW
ORGANISM Norovirus Hu/GII.P7/GII.6/New/Taipei/14-AG-3/2014/TW
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3974)
AUTHORS Wu,F.-T., Chen,H.-C., Chang,C.-Y., Wu,C.-Y. and Lu,C.-T.
TITLE Norovirus GII.P7/GII.6 gastroenteritis outbreaks
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3974)
AUTHORS Wu,F.-T., Chen,H.-C., Chang,C.-Y., Wu,C.-Y. and Lu,C.-T.
TITLE Direct Submission
JOURNAL Submitted (19-JUN-2014) Centers for Disease Control department of
health Taiwain, R.O.C., Center for Research and Diagnostics, No.
161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..3974
/organism="Norovirus
Hu/GII.P7/GII.6/New/Taipei/14-AG-3/2014/TW"
/mol_type="genomic RNA"
/isolate="Hu/GII.P7/GII.6/New Taipei/14-AG-3/2014/TW"
/isolation_source="stool specimen from a 9-year male with
diarrhea"
/host="Homo sapiens"
/db_xref="taxon:1631338"
/country="Taiwan"
/collection_date="Mar-2014"
CDS <1..1491
/note="ORF1"
/codon_start=1
/product="nonstructural protein"
/protein_id="AJW67358.1"
/translation="GPGKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPS
LQQVMRDQLKPFTEPRGKPPRPVVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKT
TSSGSPHHVRKNDHWNGESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDK
IYKKIKKRLLWGSDLGTMIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKH
SKYRYHYDADYSRWDSTQQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDF
VISVQEGLPSGVPCTSQWNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVS
TDINLDPMKLTQKLREYGLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKL
DQDSILRQLYWTRGPNHENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVIN
EIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
CDS 1472..3115
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AJW67359.1"
/translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQASRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRNTTGNSIGATRAHEAHIDTTNPRYTPKLGSVLMYSESSDFDDG
QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ"
CDS 3115..3891
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="AJW67360.1"
/translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTLPRSEPPKIKANSDSASVYSSASTAPSQST
HSTALTAGSSSSRTTSSSAVASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKA
SSYGSVSTVPKAVLDSWTPMFNTHRQPLFAHVRRRGESQI"
ORIGIN
1 ggtccaggca aggcgcccaa acttagcacg aagaccaagt tctggcgttc atcaccagac
61 gctttgccgc caggcactta tgagcctgcc tacttgggag gtaaggaccc tagagtggaa
121 aaaggaccat ccctgcagca agtcatgagg gaccagctaa aacctttcac agaacccagg
181 ggcaagccac ctagacctgt agtcttagaa gaagccaaaa agacagtgat gaatgttcta
241 gagcaaacca ttgaccctgc taaaccgtgg acctattccc aagcatgtgc ctcactggac
301 aagaccactt ccagtggtag cccccatcat gtcaggaaaa atgaccattg gaatggggaa
361 tccttcactg gccccctcgc agaccaagca tccaaagcca acctcatgta cgagcaggcc
421 aaacatgtgc agcccgtgta cacggccgca cttaaagatg aactagtcaa aactgataag
481 atctacaaga agataaagaa aaggctctta tgggggtcgg atcttggtac aatgatcagg
541 tgcgccaggg cctttggcgg tctcatggat agcatgaagg caagctgcat agccctccca
601 tgtagggtag gaatgaacat gaatgaggat ggccccatca tatttgataa acattctaag
661 tataggtacc attatgatgc tgactattcc aggtgggact caacccagca aaggagcatt
721 ctctcggccg ctatggaagt gatggtgcgg ttctctgctg aaccagagct ggcacaagtg
781 gttgcagagg acctcctggc acccagccaa ctagacgttg gcgatttcgt catctcagtc
841 caggagggtc tgccatcagg ggtcccatgc acatcacaat ggaattcaat agcacactgg
901 atcctaacct tgagtgcaat ggcagaagta tcgggtctct caccagatgt cgttcaagcc
961 cactcctgtt tctcattcta cggtgatgat gagatcgtca gcactgacat caaccttgat
1021 cccatgaagt tgacacagaa gctcagagag tatggcctgg tccccacccg acctgacaaa
1081 actgagggtc ccctcgtaat aactgaagat ctcaccggcc taacgttcct gcgtaggtca
1141 attgcacggg acccagctgg gtggtttgga aaattggacc aagactcaat cctcagacag
1201 ttgtactgga caaggggccc caaccatgag aacccatatg agagcatggt ccctcattcc
1261 cagcgggcca cacaacttat ggcccttctc ggtgaggctt cactgcatgg tccccagttt
1321 tacaagaaag ttagcaagat ggttattaat gagatcaaaa gtggtggtct ggaattctat
1381 gtgcccagac aagaggccat gttcagatgg atgagattct ctgacctcag cacatgggag
1441 ggcgatcgca atcttgctcc cgagggtgtg aatgaagatg gcgtcgaatg acgctgctcc
1501 atcgaatgat ggtgctgcca acctcgtacc agaggccacc aatgaggtta tggcacttga
1561 gccggtggtg ggagcctcaa ttgctgctcc tgtcgtcggc caacaaaata taattgaccc
1621 ctggattaga gaaaattttg ttcaggcacc acagggtgag tttactgttt caccaaggaa
1681 ctcacctggt gagatgcttc taaatcttga attaggccct gagctcaacc cttatctgag
1741 tcacttgtcc cgcatgtata acggctatgc tggtggtatg caggttcagg tggtcctagc
1801 tgggaatgcg ttcacagctg gtaaaatcat ctttgccgcc gtcccaccac atttccctgt
1861 tgagaacatt agtgcagccc aaatcacaat gtgcccccat gtaattgttg atgtaagaca
1921 gcttgagcca gtgcttttgc ccctccctga cataaggaat agattctttc attataatca
1981 ggaaaatacc ccccggatga gacttgtggc tatgttgtat acacccctta gagcaaattc
2041 tggtgaggat gtgtttacgg tgtcttgcag agtcctgacc cgccctgccc ccgactttga
2101 gttcacgttt ttggtgccac caactgtgga atcaaagact aagcccttta cactccctat
2161 tctgactctt ggagagctgt ccaactccag attccccgct ccgatagata tgttgtacac
2221 tgaccccaat gaggcaattg tggtgcaacc acaaaatggc aggtgcactc tagatggaac
2281 acttcaaggg accacccaac tggtacccac ccaaatttgc tccttcaggg gcacgctaat
2341 tagccaggcg tcgaggtctg cagattcaac agattcagcc ccacgggtga ggaaccaccc
2401 tctccacgtt cagctgaaga acctcgatgg gacaccatat gacccaacag atgaggtgcc
2461 agcagttttg ggtgccatag atttcaaagg aactgtgttt ggggtcgcta gccaaagaaa
2521 caccacaggg aactctatag gagcaacccg cgcccatgaa gcgcacatag acaccacaaa
2581 ccctagatac accccaaagc ttggctctgt gttgatgtat tctgaatcta gtgattttga
2641 tgatggacaa cccacccgct ttacccccat tggcatggga gccgatgatt ggcaccaatg
2701 ggaattgccc gaatattctg gtcaccttac tcttaacatg aatttggccc ccgcagttgc
2761 ccctgctttc cctggtgagc gcattctctt cttcagatca gtggtgccgt ctgctggtgg
2821 ctatggatca ggtcacatag attgcctcat cccacaggag tgggttcagc atttctacca
2881 ggaggccgct ccatcacagt ccgcggtggc tcttatcaga tatgtcaacc ctgacactgg
2941 aagaaacatc tttgaggcaa aactgcatag agaagggttc atcactgtgg caaattctgg
3001 aaacaacccc atagttgtgc ccccaaatgg ttactttagg tttgaggcct gggtcaatca
3061 attctacaca ctcaccccca tgggaactgg acaggggcgc agaagagtcc aataatggca
3121 ggagctttct tagctggatt ggcaggtgac gccataacaa gtggtgtcgg gtccctaatc
3181 aatgctgggg ccaatgcaat taaccaaaag gtagaatatg actttaataa acagctccaa
3241 ttggcatcct tcaaacatga caaagagatg ttgcaatcac aagtactggc cactaaacag
3301 ctccaacagg agatgatgaa cataaggcaa ggggtcttgt ccgctggcgg cttttcccct
3361 acagatgccg cgagaggtgc tgtgaacgcg ccgatgacaa aaattttgga ttggaatgga
3421 acaaggtact ttgccccaaa tagtatgaag acaaccagct attcgggcca gttttccagc
3481 aaccctgtgc ataggcagcc cactttaccc cgttctgaac ccccaaaaat taaggctaat
3541 agtgattctg ctagtgtgta tagttctgca tctactgctc cttcacaatc aactcactca
3601 acggctttga ctgcggggtc tagctcatct aggacaacat cctcttctgc agtagcttcc
3661 accctatcta ggactagtga ctgggtgaga ggacaaaatg aaaggcttag cccgtttatg
3721 gatggtgctc tccaaacaac ttttgtcaca ccaccatcga gcaaagcttc atcatatggg
3781 tcggtctcaa ccgttcccaa agctgttttg gactcctgga ctcctatgtt caatacccat
3841 aggcagcctc tcttcgctca tgtgcgcagg cgaggggagt cacagattta gtgaaaagat
3901 tgattaggtt ttctttcttt cttcttttcc ttttctttct tttaaaaaaa aaaaaaaaaa
3961 aaaaaaaaaa aaaa
//