Typing tool
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Typing tool
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Complete norovirus genomes
| KM036372 | GI.6 | |
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| GI.P11 |
ORF1: 1..1176
ORF2: 1160..2782
ORF3: 2782..3411
LOCUS KM036372 3536 bp RNA linear VRL 01-JUL-2015
DEFINITION Norovirus Hu/GI.Pb/GI.6/Kaohsiung/14-A-7/2014/TW nonstructural
protein gene, partial cds; and major capsid protein and minor
structural protein genes, complete cds.
ACCESSION KM036372
VERSION KM036372.1
KEYWORDS .
SOURCE Norovirus Hu/GI.Pb/GI.6/Kaohsiung/14-A-7/2014/TW
ORGANISM Norovirus Hu/GI.Pb/GI.6/Kaohsiung/14-A-7/2014/TW
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3536)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Co-infection GI.Pb/GI.6 and GII.P22/GII.5 in one patient
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3536)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Direct Submission
JOURNAL Submitted (18-JUN-2014) Centers for Disease Control department of
health Taiwain, R.O.C., Center for Research and Diagnostics, No.
161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..3536
/organism="Norovirus
Hu/GI.Pb/GI.6/Kaohsiung/14-A-7/2014/TW"
/mol_type="genomic RNA"
/isolate="Hu/GI.Pb/GI.6/Kaohsiung/14-A-7/2014/TW"
/isolation_source="stool specimen from a 21-year male with
diarrhea"
/host="Homo sapiens"
/db_xref="taxon:1631305"
/country="Taiwan"
/collection_date="Jan-2014"
CDS <1..1176
/note="ORF1"
/codon_start=1
/product="nonstructural protein"
/protein_id="AJW67353.1"
/translation="SGFPHHKKKNDDWNGTAFIRELGEQAAHANNMYEQAKSMKPMYT
AALKDELVKPEKVYQKVKKRLLWGADLGTVIRAARAFGPFCDAIKSHTIKLPIKVGMN
SIEDGPLIYAEHSKYKYHFDADYTAWDSTQNRQIMTESFSIMCRLTASPELASVVAQD
LLAPSEMDVGDYVIRVKEGLPSGFPCTSQVNSINHWLITLCALSEVTGLSPDVIQSMS
YFSFYGDDEIVSTDIEFDPAKLTQVLKEYGLKPTRPDKSEGPIIVRKNVDGLVFLRRT
ISRDAAGFQGRLDRASIERQIYWTRGPNHSDPFETLVPHQQRKVQLISLLGEASLHGE
KFYRKISSKVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV"
CDS 1160..2782
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AJW67354.1"
/translation="MMMASKDAPTSPDGASGAGQLVPEANTAEQISMDPVAGASTAVA
TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNG
WVGNMRVRILLAGNAFTAGKIIICCVPPGFDARILTIAQATLFPHLIADVRTLEPVEL
PLEDVRNVLYHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSF
LFLVPPSVEQKTRVFSVPNIPLKDLSNSRVPVPVQGMFVSPDVNQSVQFQNGRCQIDG
QLQGTTPVSLSQLCKIRGKTSSNARVLNLSEVDGTPFIPLESPAPVGFPDLGGCDWHV
NFTFQTQDRDPSQSVTFATNDASFVPYLGSVSPHNGEGFQAGDIIGSLGWISAPSDNS
QFNVWAIPKYGSSLPDVTHLAPAVFPPGFGEVILYFYSTFPGSGQPSQLQVPCLLPQE
FITHFCNEQAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSVSSGPQTLPIN
GVFVFVSWVSRFYQLKPVGTASAARRLGLRRI"
CDS 2782..3411
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="AJW67355.1"
/translation="MAQAVIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQN
SFKHDKEMLGYQVQASNALLAKNLNTRYALLQAGGLSSADAARAVAGAPVTRIVDWNG
TRIAAPTSSTTTLRSGGFMAVPIPLSSKTKQPVMSGQDNPNYAASSISRTASWVQSQN
SMRSVSPFHSDAMRTVWVTPPGSSSTSSVQSSFYGVFNTDRLPLFANRR"
ORIGIN
1 tcaggtttcc cccaccataa gaaaaagaat gatgattgga acggcaccgc cttcattaga
61 gagttgggag agcaggcggc acacgccaat aatatgtatg agcaagccaa gagcatgaag
121 cccatgtaca cggcggcgct taaggatgaa ttagtaaagc cagaaaaagt gtatcaaaaa
181 gtgaagaagc gtctgctttg gggggcagat ctaggaacag tgattcgggc cgcacgggct
241 tttggcccgt tctgtgatgc cataaagtcc cacacaatta aactacctat caaagttggg
301 atgaattcaa tcgaggatgg accattaatt tatgcagagc attcaaaata taaatatcac
361 tttgatgcag actatacggc ttgggactca acacaaaata ggcaaattat gactgaatca
421 ttctcaatca tgtgtcggct aactgcttct ccagaattgg cctcagtggt ggcacaagat
481 ctgcttgcac cctcagaaat ggacgttggt gactatgtca taagggtgaa ggaaggcctc
541 ccatccggct ttccatgcac gtcacaagtc aatagtatta accattggct gataactttg
601 tgtgccctct ctgaggtgac tggcctgtca ccagatgtta tccagtctat gtcatacttt
661 tctttctatg gtgatgatga aatagtgtct actgacatag aatttgaccc agcaaaattg
721 acacaggtcc ttaaagagta tggcctcaaa cccacccgcc ctgacaagag tgagggtcca
781 ataattgtga ggaagaacgt ggatggctta gtcttcttac gtcgcaccat ttcccgcgac
841 gccgcggggt tccaagggcg gctagaccga gcttccattg aaagacagat ctattggacc
901 agagggccca atcactcaga cccctttgaa accttggtgc cccaccaaca aaggaaagtc
961 cagttgatat cactgttagg tgaggcctca ttgcatggtg aaaagttcta taggaagatc
1021 tcaagcaaag tcatccaaga gattaagaca gggggccttg aaatgtatgt accagggtgg
1081 caagccatgt tccgctggat gcggttccac gatcttggcc tgtggacagg agatcgcaat
1141 ctcctgcccg aatttgtaaa tgatgatggc gtctaaggac gccccaacat cccctgatgg
1201 cgctagtggc gccggccagc tggtaccgga ggctaataca gctgagcaaa tttcaatgga
1261 ccctgttgcg ggtgcttcaa cagcagtcgc aacggctggg caagttaaca tgattgaccc
1321 atggatcttc aacaactttg tccaagcacc ccaaggagaa ttcactattt cccctaataa
1381 tacccccggt gatattttgt ttgacctaca attaggaccc catcttaacc cattcctagc
1441 ccatctctca cagatgtata atggttgggt cggcaatatg cgtgtgcgca tattgttggc
1501 cgggaacgcc ttcacagctg gaaagataat catttgctgt gtcccccctg gttttgatgc
1561 tagaatactc acaatagctc aagcaactct cttcccacat ttgattgctg atgttaggac
1621 ccttgagcct gtagagcttc ccttggagga cgtacgcaac gttctctacc acaacagtag
1681 ccagccacag ccaacaatgc ggctggttgc tatgttgtac acccccctcc gcactggtgg
1741 tggttctgga ggcactgatg cctttgtggt ggcgggcagg gtgcttacgt gccccgcccc
1801 cgactttagc tttttgtttc ttgttccccc ttccgttgaa caaaagacca gagttttcag
1861 tgtccccaac atacctctga aagacctctc aaattctcgt gtccctgtgc ctgtacaggg
1921 catgtttgtg tccccggatg ttaatcagtc agttcagttt caaaacggac gctgccaaat
1981 tgatggtcaa ctccagggca ccaccccagt ctcgctcagc caactctgca agattagggg
2041 taaaacttca agcaatgcta gggtgctcaa cttaagtgag gtagatggta cacctttcat
2101 ccctcttgaa tcaccagcgc cagtaggttt tcctgactta ggaggctgtg actggcacgt
2161 aaattttact ttccagactc aagatcggga cccatctcaa agtgtgacct ttgcaaccaa
2221 tgatgccagc tttgtcccct acttaggcag tgtctcccct cacaatgggg aaggttttca
2281 agcaggtgac atcataggta gccttgggtg gatttcagcc ccgtctgata attcacaatt
2341 taatgtttgg gcaataccaa agtatggatc tagtctccca gatgtcaccc atcttgctcc
2401 tgctgtgttc cccccaggct ttggggaggt gatcctatat ttctactcta ccttcccagg
2461 ttctggacaa cccagtcaac ttcaagtccc atgtttgttg cctcaggagt tcatcaccca
2521 tttctgtaac gaacaggctc ccatcgctgg ggaggctgcc ctcctccact acgtggaccc
2581 tgacacgggg cggaacttgg gggaattcaa actctatcct gatgggttta tgacctgtgt
2641 ccccaatagt gttagcagtg gccctcaaac ccttcctatt aatggagtct ttgtctttgt
2701 ttcatgggtg tccagattct atcaactcaa gcctgtggga acggcctcag cggctagaag
2761 gcttggattg cggcgtatat aatggcccaa gctgtcatcg gtgccatagc cgcgtctgcc
2821 gctggcagta tactaggggc aggcatacag gctggtgctg aggctggtct ccaggctcaa
2881 cggtaccagc aggatttaca attgcaacaa aattctttca agcatgataa ggaaatgtta
2941 ggctatcagg ttcaggctag taatgctctt ttagctaaga atcttaacac tagatatgct
3001 cttctgcagg cagggggctt atctagtgct gatgctgctc gggcagtggc tggtgctcct
3061 gtcacccgta tagtggactg gaatggcacg cgtattgcag cgcctacctc aagcaccact
3121 acactcagat ctggtggttt tatggctgtc cctataccat tgtcttcaaa gaccaagcaa
3181 ccagtgatgt ctgggcagga taatccaaat tatgctgctt cttctatctc tagaactgct
3241 tcatgggtgc aatctcaaaa ttctatgaga tctgtttctc ctttccacag tgatgctatg
3301 agaaccgtgt gggtcacacc accaggttca tcatcaactt catctgtgca atctagtttt
3361 tatggtgttt ttaatacaga tagattgcct ctgttcgcaa acagaaggta aagattttgt
3421 aataggatgc cagtgggcac catattcaga tttggtttta attagattgt tttaattaaa
3481 atttggctca attggtgtta aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//