Typing tool
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Typing tool
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Complete norovirus genomes
| KJ634708 | GII.3 | |
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| GII.P21 |
ORF1: 1..825
ORF2: 806..2452
ORF3: 2452..3193
LOCUS KJ634708 3193 bp RNA linear VRL 10-JAN-2019
DEFINITION Norovirus Hu/GII.3/Novosibirsk/Nsk-N4724/2012/RUS nonstructural
polyprotein (ORF1) gene, partial cds; major capsid protein VP1
(ORF2) gene, complete cds; and minor capsid protein VP2 (ORF3)
gene, partial cds.
ACCESSION KJ634708
VERSION KJ634708.2
KEYWORDS .
SOURCE Norovirus Hu/GII.3/Novosibirsk/Nsk-N4724/2012/RUS
ORGANISM Norovirus Hu/GII.3/Novosibirsk/Nsk-N4724/2012/RUS
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3193)
AUTHORS Zhirakovskaia,E.V., Tikunov,A.Y., Bodnev,S.A., Klemesheva,V.V.,
Netesov,S.V. and Tikunova,N.V.
TITLE Molecular epidemiology of noroviruses associated with sporadic
gastroenteritis in children in Novosibirsk, Russia, 2003-2012
JOURNAL J. Med. Virol. 87 (5), 740-753 (2015)
PUBMED 25693507
REFERENCE 2 (bases 1 to 3193)
AUTHORS Zhirakovskaia,E., Tikunov,A., Tymentsev,A., Sokolov,S.,
Sedelnikova,D. and Tikunova,N.
TITLE Changing pattern of prevalence and genetic diversity of rotavirus,
norovirus, astrovirus, and bocavirus associated with childhood
diarrhea in Asian Russia, 2009-2012
JOURNAL Infect. Genet. Evol. 67, 167-182 (2019)
PUBMED 30414977
REFERENCE 3 (bases 1 to 3193)
AUTHORS Zhirakovskaya,E. and Tikunova,N.
TITLE Direct Submission
JOURNAL Submitted (24-MAR-2014) Siberian Branch of the Russian Academy of
Sciences, Institute of Chemical Biology and Fundamental Medicine, 8
Lavrentiev Avenue, Novosibirsk 630090, Russia
COMMENT On Dec 14, 2018 this sequence version replaced KJ634708.1.
FEATURES Location/Qualifiers
source 1..3193
/organism="Norovirus
Hu/GII.3/Novosibirsk/Nsk-N4724/2012/RUS"
/mol_type="genomic RNA"
/strain="Hu/GII.P21-GII.3/RUS/Novosibirsk/Nsk-N4724/2012"
/isolation_source="feces"
/host="Homo sapiens; sex: M; age: 9 months"
/db_xref="taxon:1543235"
/country="Russia: Novosibirsk"
/collection_date="15-Aug-2012"
/note="genotype: GII.P21-GII.3"
gene <1..825
/gene="ORF1"
CDS <1..825
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="AZM32827.1"
/translation="YHYDADYSRWDSTQQRAVLAAALEIMVKFSPEPHLAQVVAEDLL
SPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLF
SFYGDDEIVSTDIKLDPEKLTAKLREYGLKPTRPDKTEGPLIISGDLNGLTFLRRTVT
RDPAGWFGKLDQSSILRQMYWTKGPNHEDPFETMIPHSQRPIQLMSLLGEAALHGPSF
YSKISKLVISELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 806..2452
/gene="ORF2"
CDS 806..2452
/gene="ORF2"
/codon_start=1
/product="major capsid protein VP1"
/protein_id="AZM32828.1"
/translation="MKMASNDAAPSNDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFSLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFQGKVFGVASQRNPDTTTRAHEAKIDTTSGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDREADFQQWTLPDYAGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPSQSQVALVRYINPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
gene 2452..>3193
/gene="ORF3"
CDS 2452..>3193
/gene="ORF3"
/codon_start=1
/product="minor capsid protein VP2"
/protein_id="AZM32821.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQTIDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPGATSTTSMSGGFTNQTVHRSTPNFKTNQAPKSTPSSGSSVRSNSTQVTSLSS
HSSGSSRSSGSTVVSSIPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLR"
ORIGIN
1 taccattatg atgcagatta ctcccgctgg gactcaacac aacaaagagc agtgctagcc
61 gcagccctgg aaataatggt caaattctca ccagaacccc atctggccca agtggttgca
121 gaagaccttt tgtcccccag tgtgatggat gtgggtgatt tcaagatatc aatcaacgag
181 ggattaccct ctggtgtccc ttgcacttca caatggaact ccattgctca ctggctcctc
241 acactatgtg cactgtctga agtcacagac ctgtcccctg acatcatcca ggcgaattcc
301 ctgttctcct tttatggtga tgatgaaata gtgagcacag acatcaaatt agacccagag
361 aaattgacag caaagctgag ggaatacggg cttaaaccaa cccgccctga caaaacagag
421 ggacccttaa ttatctctgg agatttgaat ggcctgacct tcttgcggag aacagtgacc
481 cgcgacccgg ccggatggtt tggcaaactg gaccaaagtt caatactcag gcaaatgtac
541 tggaccaagg ggccaaacca tgaagacccc tttgaaacaa tgataccaca ctcccaaaga
601 cccatacaac tgatgtcatt acttggtgaa gctgcattgc atggtccatc attctacagt
661 aaaatcagca aattggtcat ctcagaactg aaagagggtg gaatggattt ttacgtgccc
721 agacaagaac caatgttcag gtggatgaga ttctcagatt tgagcacgtg ggagggcgat
781 cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg aatgacgccg ctccatctaa
841 tgatggtgcc gccggcctcg tcccagagat caacaatgag gcaatggcgc tagagccagt
901 ggcgggtgca gcgatagcag cacccctcac tggtcagcaa aatataattg atccctggat
961 tatgaataat tttgtgcaag cacctggtgg tgagtttaca gtgtccccca gaaattcccc
1021 tggtgaagtc cttcttaatt tggaattggg cccagaaata aatccctatt tggcccatct
1081 tgctagaatg tataatggtt atgcaggtgg atttgaagtg caggtggtcc tagctggaaa
1141 tgcgtttaca gcaggaaaga taatctttgc agctattccc cccaattttc caattgacaa
1201 tctaagtgca gcacagatca caatgtgccc acatgtgatt gtggatgtca gacagttgga
1261 accagtcaac ctcccgatgc ctgacgttcg caacaatttc tttcattata atcaagggtc
1321 tgattcgaga ttgcgcttaa ttgcaatgct atatacacct cttagggcaa ataattctgg
1381 ggatgatgtt tttactgtgt cttgcagagt gctaactaga cctagtcctg atttctcatt
1441 caatttcctt gtgccaccta ctgtggagtc aaagacaaaa cccttttccc tccctatcct
1501 gactatctct gaaatgtcca attctaggtt cccagtacca attgattctc tgcacaccag
1561 tcctactgag aatattgttg ttcagtgcca gaatgggcgc gttacccttg atggtgagtt
1621 gatgggcacc acccaactct tgcctagcca aatctgtgct ttcaggggcg ttctcaccag
1681 atcaacaagt agggccagtg accaggccga tacagcaacc cctagattgt ttaattatta
1741 ttggcatata caattggaca atctaaatgg aactccttat gatcctgcag aagacatacc
1801 aggcccccta gggacaccag atttccaggg caaagtcttt ggcgtggcca gccagagaaa
1861 tcctgatacc acgactaggg cacatgaagc aaagatagac accacatctg gtcgcttcac
1921 cccaaagcta ggctcattag agatatccac tgagtctggt gactttgatc aaaaccaacc
1981 aacaagattc accccagttg gcattggagt tgaccgtgag gcagactttc aacaatggac
2041 tctacctgac tacgctggcc agttcacaca caacatgaac ttagccccag ctgttgctcc
2101 caacttccct ggtgaacagc tccttttctt ccgctcacag ttaccatctt ctggtgggcg
2161 atccaacggg attctagact gcctggtccc ccaagaatgg gtacagcact tctatcaaga
2221 atcagccccc tcccagtctc aagtggccct ggttaggtat atcaaccctg acactggtag
2281 agtgttattt gaggccaagc tgcacaaatt aggtttcatg actatagcca agaatggtga
2341 ttctccaata actgtccccc caaatggata ctttaggttt gaatcttggg tgaacccctt
2401 ttacacgctt gcccccatgg gaactgggaa tgggcgtaga aggattcaat aatggctgga
2461 gcttttatag caggattggc tggtgacatg ctcacaaata ctgtaggatc tttagttaat
2521 gcaggggcta atgccattaa tcaaacaatt gattttgaaa ataataaata tttgcaaaat
2581 gcttctttta atcatgataa ggagatgttg aatgcacaaa ttgaggcaac aaagaggtta
2641 caggctgaca tgattgctat caaacaaggg gttttgaccg ctggcggctt ctcccctact
2701 gatgcagccc gtggggcaat taatgccccc atgacaaaag tcctagattg gaatggaacg
2761 agatactggg caccaggtgc cacctccaca acctcgatgt cgggtggctt tacaaatcaa
2821 actgtgcaca gatccacacc aaattttaaa acgaaccagg ctcccaaatc cacacccagc
2881 agtgggtctt cagtgaggtc aaactcaacc caggtcacta gcctgagctc acactcgtcc
2941 gggtcgtctc gatccagcgg gtctacagtt gtcagctcta taccatcctc taacaggact
3001 agggactggg tcaaccaaca aaattttaat ttggaaccac acatgcctgg atctcttagg
3061 acagcttttg tcaccccacc atccagtaca gcctctagct caggcacagt ctcaactgtg
3121 cccaaaaatg ttttggactc ctggacatct gcgtttaaca cgcgcagaca gccgctattc
3181 gcacaccttc gca
//