Typing tool
|
Complete norovirus genomes
KJ541743 | GII.4 Den Haag | ||
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GII.P4 Den Haag |
ORF1: 5..5104 ORF2: 5085..6707 ORF3: 6707..7513LOCUS KJ541743 7559 bp RNA linear VRL 21-MAY-2014 DEFINITION Norovirus Hu/GII.4/SGU-110421/KOR/2011, complete genome. ACCESSION KJ541743 VERSION KJ541743.1 KEYWORDS . SOURCE Norovirus Hu/GII.4/SGU-110421/KOR/2011 ORGANISM Norovirus Hu/GII.4/SGU-110421/KOR/2011 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7559) AUTHORS Min,B.S., Han,K.R., Lee,J.I. and Yang,J.M. TITLE cDNA cloning of Korean human norovirus and nucleotidylylation of VPg by norovirus RNA-dependent RNA polymerase JOURNAL J. Microbiol. 50 (4), 625-630 (2012) PUBMED 22923111 REFERENCE 2 (bases 1 to 7559) AUTHORS Min,B.S., Han,K.R. and Yang,J.M. TITLE Direct Submission JOURNAL Submitted (05-MAR-2014) Biotechnology & Bioinformatics, Korea University, Rm 244, Nokji, Anam Dong, Sungbuk Gu, Seoul 136-701, Korea COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7559 /organism="Norovirus Hu/GII.4/SGU-110421/KOR/2011" /mol_type="genomic RNA" /strain="SGU-110421" /host="Homo sapiens" /db_xref="taxon:1498296" /country="South Korea" /collection_date="21-Apr-2011" /note="genotype: GII.4" CDS 5..5104 /codon_start=1 /product="nonstructural polyprotein" /protein_id="AHZ89837.1" /translation="MKMASNDASAAAVANSNNDTAKSSSDKMFSSMAVTFKRALGARP KQPPPGEIPQRPPRPPTPELVKKIPPPPPNGEDEVVVSYSAKDGVSGLPELSTVRQPE ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LAKVELTPLSLFWRPVYTPQYLTSPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGK LRPLNIINILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDFELQGPED LVVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREV AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEFELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLRDVKTM PELKQALKNISIKECQIVYSGCTYTLESDGKGNVKVDRVQSTSVQTNNELAGTLYHLR CARIRYYVKCVQEALYSIIQIAGAAFVATRIIKRVNIQDLWSKPQVENTEEATNEDGC PKPKDNEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGGEGEATLEGGDSKGTYCGAPILG PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKDGPSLQQVMRDQLKPFTEP RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFDEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD STQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP NHEDPSESMIPHSQRPIQLMSLLGEAALHGPTFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 5085..6707 /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="AHZ89836.1" /translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGEDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHIAGSRNYTMNLASLNWNNYDPTEEIPAPLGTPDFVGKIQGVL TQTTKGDGSTRGHKATVYTGSAPFTPKLGSVQFSTDTENDFETHQNTKFTPVGVIQDG GTTHRNEPQQWVLPSYSGRNVHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 6707..7513 /note="minor capsid protein" /codon_start=1 /product="VP2" /protein_id="AHZ89838.1" /translation="MAGAFFAGLASDVLSSGLGSLINAGAGAINQKIDFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARITTYNAGRFSTPQPSGALPGRINPRTPTPARGSPSTSS NASTATSIYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV" ORIGIN 1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgctaaca gcaacaacga 61 caccgcaaaa tcttcaagtg acaaaatgtt ttctagcatg gctgtcactt ttaaacgagc 121 cctcggggcg cggcctaaac agcccccccc gggggaaata ccacaaagac ccccacgacc 181 acctactcca gaactggtca aaaagatccc tcctcccccg cccaacggag aggatgaggt 241 agtggtttct tatagtgcca aagatggcgt ttccggtttg cctgagcttt ccaccgtcag 301 gcaaccggaa gaaaccaata cggccttcag tgtccctcca ctcaaccaga gggagaatag 361 ggatgctaag gaaccactga ctggaacaat tctggaaatg tgggatggag aaatctacca 421 ttatggcctg tatgttgagc gaggtcttgt gctgggtgtg cacaaaccac cagctgccat 481 tagcctcgcc aaggtcgaac taacaccact ctccttgttc tggagacctg tgtacactcc 541 tcagtacctc acctctccag acactctcaa gaaattacac ggagaaacat ttccctacac 601 agccttcgac aacaattgct atgccttctg ttgctgggtc ctggatctaa acgactcgtg 661 gctgagtagg agaatgatcc agagaacaac tggcttcttc agaccctacc aagattggaa 721 taggaaaccc ctccccacta tggatgattc caaattaaag aaggtagcta acatattcct 781 gtgcaccctg tcttcgctat tcaccaggcc cataaaagac ataataggga agttaaggcc 841 cctcaacatc atcaacatcc tggcttcatg tgattggact ttcgcaggca tagtggagtc 901 cttgatactc ttggcagagc tctttggagt cttctggaca cccccagatg tgtctgcgat 961 gattgccccc ttactcggtg atttcgagtt acaaggacct gaggaccttg tagtggagct 1021 cgtccctgta gtaatggggg gaattggttt ggtgctagga ttcaccaaag agaagattgg 1081 aaaaatgttg tcatctgctg catctacctt gagagcttgt aaagatcttg gtgcgtatgg 1141 gctagagatc ctaaagttag tcatgaagtg gttcttcccg aagaaagagg aagcaaatga 1201 actggctatg gtgagatcca tcgaggatgc agtactggac cttgaggcaa ttgaaaacaa 1261 ccatatgacc accttgctca aagacaaaga cagcctggca acctatatga gaacccttga 1321 cctcgaggaa gagaaagcca gaaaactctc aaccaagtct gcttcacctg acatcgtggg 1381 tacaatcaac gcccttctgg cgagaatcgc cgctgcacgc tccctggtgc accgagcgaa 1441 ggaggagctt tccagcagac caagacctgt agtcttgatg atatcaggca gaccaggaat 1501 agggaagacc caccttgcta gggaagtggc taagagaatc gcagcctccc tcacaggaga 1561 ccagcgtgta ggcctcatcc cacgcaatgg cgtcgatcac tgggatgcgt acaaggggga 1621 gagggtcgtc ctatgggacg actatggaat gagcaatccc atccacgacg ccctcaggct 1681 gcaagaactc gctgacactt gccccctcac tctaaattgt gacaggattg agaataaagg 1741 aaaggtcttt gacagcgatg tcatcatcat cactactaac ctggccaacc cagcaccact 1801 ggactatgtc aactttgaag cgtgctcgag gcgtatcgat ttcctcgtgt atgcagaagc 1861 ccccgaggtc gaaaaggcaa agcgtgactt cccgggccaa cctgacatgt ggaaaaacgc 1921 ttttagttct gatttctcac acataaaatt ggcactggct ccacaaggtg gctttgataa 1981 gaacgggaac accccacacg ggaagggcgt catgaagact ctcaccactg gctccctcat 2041 tgcccgggca tcagggctgc tccatgagag attggatgag tttgaactac agggcccagc 2101 tcttaccacc ttcaacttcg accgcaacaa agtgcttgcc ttcaggcagc ttgctgctga 2161 aaacaaatac gggttgatgg acacaatgaa agttgggagg cagctcaggg atgtcaaaac 2221 catgccagaa cttaaacaag cactcaagaa tatctcaatc aaggagtgcc agattgtgta 2281 tagtggttgc acctacacac ttgagtctga tggcaagggc aatgtgaaag ttgacagagt 2341 tcagagcacc tccgttcaga ccaacaatga gctggctggc accctgtacc atctaaggtg 2401 cgccagaatc aggtactatg tcaagtgtgt tcaggaggcc ctgtattcta tcatccagat 2461 tgctggggct gcatttgtcg ccacgcgcat catcaagcgt gtgaacattc aagacttatg 2521 gtccaagcca caagtggaaa acacagagga ggccaccaac gaggacgggt gcccaaaacc 2581 caaagataat gaggagttcg tcatttcatc tgacgacatt aaaactgagg gtaagaaagg 2641 gaagaacaag actggccgtg gcaagaagca cacagccttc tcaagcaaag gtctcagtga 2701 tgaagagtat gatgagtaca agagaattag agaggaaagg aatggcaagt actccataga 2761 agagtacctt caggacaggg acaaatacta tgaggaggtg gccatcgcca gggcgaccga 2821 ggaagacttc tgtgaagagg aggaggccaa gatccggcaa aggatcttca gaccaacaag 2881 gaaacaacgc aaggaagaaa gagcttctct cggtttagtc acaggttctg aaattaggaa 2941 aaggaaccca gaagacttca agcctaaggg gaaactatgg gctgacgatg acagaagtgt 3001 ggactacaat gaaaaactca gctttgaggc tccaccaagc atctggtcaa ggatagtcaa 3061 ctttggctca ggttggggct tctgggtctc ccccagcctg ttcataacat caacccatgt 3121 cataccccag ggcgcaaagg agttctttgg agtccccatc aaacaaattc aggtgcacaa 3181 gtcaggcgaa ttctgtcgct tgaggttccc aaaaccaatc aggactgatg tgactggcat 3241 gatcttggaa gaaggtgcgc ccgaaggcac cgtggtcaca ctactcatca aaaggtctac 3301 tggagaactc atgcccctag cagctagaat ggggacccat gcaaccatga aaattcaagg 3361 gcgcactgtt ggaggtcaga tgggcatgct tctgacagga tccaacgcca aaagcatgga 3421 tctaggcacc acaccaggtg attgcggctg tccctacatc tacaagagag gaaatgacta 3481 tgtggtcatt ggagtccaca cggctgccgc tcgtggggga aacactgtca tatgtgccac 3541 ccaggggggt gagggggaag ctacacttga aggtggtgac agtaagggaa catactgtgg 3601 tgcaccaatc ctaggcccag ggagtgcccc aaaacttagc accaaaacca aattctggag 3661 atcatccaca gcaccactcc cacctggcac ctatgaacca gcctaccttg gtggcaagga 3721 ccccagagtc aaggatggcc cctcgttgca gcaagtcatg agggatcagc tgaaaccatt 3781 tacagagcct aggggtaagc caccaaagcc aagtgtgtta gaagctgcca agaaaaccat 3841 catcaatgtc cttgaacaaa caattgaccc acctgagaag tggtcgttcg cacaagcttg 3901 cgcgtccctt gacaagacca cttctagcgg ccatccgcac cacatgcgga aaaacgactg 3961 ctggaacggg gaatccttca caggcaagct ggcagaccag gcttccaagg ccaacctgat 4021 gtttgacgaa gggaagaaca tgaccccagt ctacacaggt gcacttaagg atgaattagt 4081 caaaactgac aaaatttatg gtaagatcaa gaagaggctt ctctggggct cggatttggc 4141 aaccatgatc cggtgtgctc gagcattcgg aggcctaatg gatgaactca aagcacactg 4201 tgtcacactt cctatcagag ttggtatgaa tatgaatgag gatggcccca tcatcttcga 4261 gaagcattcc aggtacagat accactatga tgctgattac tctcggtggg attcaacaca 4321 acagagagcc gtgctggcag ctgctctaga aatcatggtt aaattctcct cagaaccaca 4381 tttggctcag gtagtagcag aagaccttct ttctcctagc gtggtggatg tgggtgactt 4441 cacaatatca atcaacgagg gacttccctc tggggtgccc tgcacctccc aatggaactc 4501 catcgcacac tggcttctca ctctctgtgc actctccgaa gttacaaatt tgtccccaga 4561 catcatacag gctaattctc tcttctcctt ctatggtgat gatgaaattg ttagtacaga 4621 cataaaatta gacccagaga agttgacagc aaagcttaag gaatacgggt tgaaaccaac 4681 ccgccctgat aaaactgaag gacctcttgt tatttctgaa gacttagatg gtttgacttt 4741 cctgcggaga actgtgaccc gcgacccagc tggttggttt ggaaaactgg agcagagctc 4801 aatactcagg caaatgtact ggactagggg ccccaatcat gaagatccat ctgaatcaat 4861 gattccacac tctcaaagac ccatacaatt gatgtcctta ctgggagagg ccgcactcca 4921 cggcccaaca ttctacagta aaatcagcaa attagtcatt gcagagctaa aagaaggtgg 4981 tatggatttt tacgtgccca ggcaagagcc aatgttcaga tggatgagat tctcagatct 5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga 5101 atgacgccaa cccatctgat gggtccgcag ccaacctcgt cccagaggtc aacaatgagg 5161 ttatggcttt ggagcccgtt gtcggtgccg ctattgcggc gcctgtagcg ggccaacaaa 5221 atgtaattga cccctggatt agaaataatt ttgtacaagc ccctggtgga gagttcacag 5281 tatcccctag aaatgctcca ggtgaaatac tatggagcgc gcccttaggc cctgatctga 5341 acccctacct atctcatttg gccagaatgt ataatggtta tgcaggtggt tttgaagtgc 5401 aggtgatcct cgcggggaac gcgttcaccg ccggaaaaat tatatttgca gcagtcccac 5461 caaattttcc aactgaaggc ttgagtccca gccaggttac tatgttcccc cacataatag 5521 tggatgttag gcaattggaa cctgtgttga tccccttacc tgatgttagg aataacttct 5581 atcactataa tcagtcaaat gattctacca ttaaattgat agcaatgctg tatacaccac 5641 ttagggctaa taatgctggg gaagatgtct tcacagtctc ttgtcgagtt ctcacgaggc 5701 catcccctga ttttgatttt atatttttgg tgccacctac agttgagtca agaactaaac 5761 catttactgt cccaatctta actgttgaag aaatgaccaa ttcaagattc cccattccct 5821 tggaaaaatt gttcacgggt cccagcagtg cctttgttgt tcaaccacaa aatggcagat 5881 gcacgactga tggcgtgctc ttaggcacca cccaactgtc tcctgtcaac atctgcacct 5941 tcagagggga tgtcacccac attgcaggtt ctcgtaatta cacaatgaat ttggcttctc 6001 taaattggaa caattatgac ccaacagaag aaattccagc ccctctagga actccagatt 6061 ttgtgggaaa gatccaaggt gtgctcactc aaaccacaaa gggagatggt tcgacccgtg 6121 gccataaagc tacagtttac actgggagtg ccccctttac tccaaagctg ggcagtgttc 6181 aattcagtac tgatacagaa aatgattttg aaactcatca aaacacaaaa ttcaccccag 6241 tcggtgtcat ccaggatggt ggcaccaccc accgaaatga accccaacaa tgggtgctcc 6301 caagttattc aggtagaaat gtccataatg tacacctagc ccctgctgtg gcccccactt 6361 ttccgggtga acaacttctt ttctttaggt ccactatgcc cggatgcagc gggtatccca 6421 acatggattt ggattgccta ctcccccagg agtgggtgca gcacttctac caagaggcag 6481 ctccagcaca atctgacgtg gctctattga gatttgtgaa tccagacacg ggtagggtcc 6541 tgtttgagtg caaacttcat aaatcaggct atgtcacagt ggctcacacc ggccagcatg 6601 atttggtcat cccccccaat ggttatttta ggtttgattc ctgggttaat caattctaca 6661 cacttgcccc catgggaaat ggaacggggc gcagacgtgc tttataatgg ctggagcttt 6721 ctttgctgga ttggcatctg atgtccttag ctctggactt ggttccctaa tcaatgctgg 6781 ggctggggct atcaaccaaa agattgattt tgaaaataac agaaaattgc agcaagcttc 6841 cttccagttt agcagtaatc tacaacaggc ttcctttcaa catgataaag agatgctcca 6901 agcacaaatt gaggccacta aaaagttaca acaggaaatg atgaaagtca aacaggcaat 6961 gctcttagaa ggtggattct ctgaaacaga tgcagcccgt ggggcaatca acgcccctat 7021 gacaaaggct ttggactgga gcggaacaag gtactgggcc cctgatgcta ggattacaac 7081 atacaatgca ggccgttttt ccacccctca accttcgggg gcactgccag gaagaatcaa 7141 tcccaggact cctacccccg ctcggggctc ccccagcaca tcttctaatg cttctactgc 7201 tacttctata tattcaaatc aaactgtttc aacgagactt ggttctacag ctggttctgg 7261 caccaatgtc tcgagtctcc cgtcaactgc aaggactagg agttgggttg aggatcaaaa 7321 cagaaatttg tcacctttca tgaggggggc tcacaacata tcgtttgtca ccccaccatc 7381 tagcagatcc tctagccaag gcacagtctc aaccgtgcct aaagaagttt tggactcctg 7441 gactggcgct ttcaacacgc gcaggcagcc tctcttcgct cacattcgta ggcgagggga 7501 gtcacgggtg taatgtgaaa agacaaaatt gattatcttt cctttcttta gtgtctttt //