Typing tool
|
Complete norovirus genomes
KJ533134 | GII.4 Sydney | ||
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GII.P31 |
ORF1: 1..1719 ORF2: 1700..3322 ORF3: 3322..4121LOCUS KJ533134 4121 bp RNA linear VRL 31-DEC-2014 DEFINITION Norovirus 13-Z-2/2012/GII.4 nonstructural protein and major capsid protein genes, complete cds; and minor structural protein gene, partial cds. ACCESSION KJ533134 VERSION KJ533134.1 KEYWORDS . SOURCE Norovirus 13-Z-2/2012/GII.4 ORGANISM Norovirus 13-Z-2/2012/GII.4 Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 4121) AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T. TITLE Norovirus GII.4 Sydney 2012 in Taiwan JOURNAL Unpublished REFERENCE 2 (bases 1 to 4121) AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T. TITLE Direct Submission JOURNAL Submitted (04-MAR-2014) Centers for Disease Control Department of Health, Center for Research and Diagnostics, No. 161, Kun-Yang Street, Taipei, Taiwan 115, R.O.C. FEATURES Location/Qualifiers source 1..4121 /organism="Norovirus 13-Z-2/2012/GII.4" /mol_type="genomic RNA" /isolate="13-Z-2/2012/GII.4" /isolation_source="stool specimen from a 72-year female with diarrhea" /host="Homo sapiens" /db_xref="taxon:1508685" /country="Taiwan" /collection_date="Feb-2013" CDS 1..1719 /note="ORF1" /codon_start=1 /product="nonstructural protein" /protein_id="AID51533.1" /translation="MLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAARG GNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTTPLPPGT YEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPNVLEAAKKTIINVLEQTI DPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFEEGKN MTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRCARAFGGLMDELKAHCVTLP VRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVLAAALEIMVKFSPEPHLA QIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPD IIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGL TFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETMIPHSQRPIQLMSLLGE AALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFV NEDGVE" CDS 1700..3322 /note="VP1" /codon_start=1 /product="major capsid protein" /protein_id="AID51534.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSRNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGVL TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDRDFEANQNTKFTPVGVIQDG STTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 3322..>4121 /note="VP2" /codon_start=1 /product="minor structural protein" /protein_id="AID51535.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKDILDSWTGAFNTRRQPLFAHIRKRGESR" ORIGIN 1 atgctcctga caggatccaa cgccaagagt atggacctag gcacaacacc aggcgactgc 61 ggctgcccct acatctacaa gagggggaat gactacgtgg tcataggagt ccatacggcc 121 gctgcccgtg gaggaaacac tgtcatatgt gccacccagg ggagtgaggg agaagccaca 181 cttgaaggag gtgacagtaa agggacatac tgtggcgcac caatcttggg cccagggagc 241 gctccgaagc tcagtaccaa gactaagttt tggagatcat ccacaacacc actcccacct 301 ggcacctacg aaccagccta cctcggtggc aaagacccta gagtcaaagg tggcccttca 361 ttgcaacaag ttatgaggga ccagctgaag ccattcacag aacccagagg caaaccacca 421 agaccaaatg tgttggaagc tgccaagaaa accatcatca atgtccttga gcaaacaatt 481 gatccacccc aaaaatggtc atttgcgcaa gcttgcgcat cccttgacaa aaccacctcc 541 agcggccacc cgcaccacat gcggaaaaac gactgttgga atggggagtc cttcacagga 601 aaattggctg atcaagcctc caaggccaac ctaatgtttg aagagggaaa gaacatgact 661 ccagtctaca caggtgcact taaagatgag ttggtaaaga ccgataaagt ttatggtaag 721 gtcaagaaga ggcttctgtg gggttcagat ctggcgacca tgatacggtg cgcccgagct 781 tttggaggcc tcatggatga actcaaggca cactgtgtca cacttcctgt cagagttggt 841 atgaacatga atgaggatgg ccccatcatc tttgagaagc actccagata tagatatcac 901 tatgatgctg attattcccg gtgggactca acacaacaaa gggatgtgct agcagcagca 961 ctagaaatca tggttaagtt ctctccagaa ccacacctgg cccagatagt tgcagaagac 1021 ctcctctccc ctagcgtgat ggatgtaggt gactttcaaa tatcaataag tgagggtctc 1081 ccctctgggg taccttgtac ctcccagtgg aattccatcg cccactggct cctcactctg 1141 tgtgcactct ctgaagtcac ggacctgtcc cctgacatca ttcaggccaa ctcccttttc 1201 tccttctatg gtgatgatga gattgtaagc acagacataa agttggaccc agagaagctg 1261 acagcaaaac tcaaggagta cgggctgaaa ccaacccgcc ccgacaaaac tgaaggaccc 1321 cttgttatct ctgaagacct ggatggcctg acattcctcc ggagaactgt gacccgtgat 1381 ccagctggct ggtttggaaa attggaacaa agttcaattc tcaggcaaat gtactggacc 1441 aggggtccca accatgaaga tccatttgaa acaatgatac cacactccca aagacccata 1501 caattgatgt ccttgctggg cgaggctgca ctccacggcc cggcattcta tagcaaaatt 1561 agcaaattag tcattgcaga gttgaaggaa ggtggcatgg atttttacgt acccagacaa 1621 gagccaatgt tcagatggat gagattctca gatctgagca cgtgggaggg cgatcgcaat 1681 ctggctccca gttttgtgaa tgaagatggc gtcgagtgac gccaacccat ctgatgggtc 1741 cgcagccaac ctcgtcccag aggtcaacaa tgaggttatg gctctggagc ccgttgttgg 1801 tgccgccatt gcggcacctg tagcgggcca acaaaatgta attgacccct ggattagaaa 1861 taattttgta caagcccctg gtggagagtt tacagtatcc cctagaaacg ctccaggtga 1921 aatactatgg agcgcgccct tgggccctga tctaaatccc tacctatccc atttggccag 1981 aatgtacaat ggttatgcag gtggttttga agtgcaggta attctcgcgg ggaacgcgtt 2041 caccgccggg aaggtcatat ttgcagcagt cccaccaaat tttccaactg aaggcttgag 2101 ccccagccag gtcactatgt tcccccatat agtagtagat gttaggcaac tagaacctgt 2161 gttgattccc ttacccgatg ttaggaataa tttctatcat tataatcaat caaatgatcc 2221 caccattaag ttgatagcaa tgttgtatac accacttagg gctaataatg ctggggatga 2281 tgtcttcaca gtttcttgcc gagttctcac gagaccatcc cccgattttg atttcatatt 2341 tctagtgcca cccacagttg agtcaagaac taaaccattc tctgtcccag ttttaactgt 2401 tgaggagatg accaattcaa gattccccat tcctttggaa aagttgttca cgggtcccag 2461 cagtgccttt gttgtccaac cacaaaacgg taggtgcacg actgatggcg tgctcctagg 2521 caccacccaa ctgtctcctg tcaacatctg caccttcagg ggagatgtca cccatatcac 2581 aggtagtcgt aactacacaa tgaatttggc ttctcaaaat tggagcaatt atgacccaac 2641 agaagaaatc ccagcccctc taggaactcc agattttgtg gggaagattc aaggcgtgct 2701 cacccaaacc acaaggacag atggctcaac acgcggccac aaagccacag tgtacactgg 2761 gagcgccgac tttgctccaa aactgggtag agttcaattt gaaactgaca cagaccgtga 2821 ttttgaagct aaccaaaaca caaagttcac cccagttggt gtcatccaag atggtagcac 2881 cacccaccga aatgaacccc aacagtgggt gcttccaagt tactcaggca gaaatactcc 2941 taatgtgcat ctggcccccg ctgtagcccc cacttttccg ggtgagcaac ttctcttctt 3001 cagatccacc atgcccggat gcagcgggta ccccaacatg gacttggact gtctgctccc 3061 ccaggaatgg gtgcagtact tctaccaaga ggcagcccca gcacaatctg atgtggctct 3121 gctaagattt gtgaatccag acacaggtag ggttttgttt gagtgtaagc ttcataaatc 3181 aggctatgtt acagtggctc acactggcca acatgatttg gttatccccc ccaatggtta 3241 ttttaggttt gattcctggg tcaaccagtt ttacacgctt gcccccatgg gaaatggaac 3301 ggggcgtaga cgtgcactat aatggctgga gctttctttg ctggattggc atctgatgtc 3361 cttggctctg gacttggttc ccttatcaat gctggggctg gggccatcaa ccaaaaagtt 3421 gagtttgaaa ataacagaaa attgcaacaa gcatccttcc aatttagcag caatctacaa 3481 caggcttcct ttcaacatga caaagagatg ctccaagcac aaattgaggc caccaaaagg 3541 ctacaacagg aaatgatgaa agttaagcag gcaatgctcc tagagggtgg gttctctgag 3601 acagatgcag cccgcggggc aatcaacgcc cccatgacaa aagctttgga ctggagcggg 3661 acaaggtact gggctcccga tgctaggact acaacataca atgcaggccg cttttctacc 3721 cctcaaccat cgggggcact gccaggaaga gctaatctta gggatgctgt ccctgctcgg 3781 ggttcctcca gtaagtcttc taattcttct actgctactt ctgtgtactc aaatcaaact 3841 acttcaacga ggcttggttc tacagctggt tctggcacca gtgtctcgag cttcccgtca 3901 actgcaagga ctaggagctg ggttgaggat caaagtagga atttgtcacc tttcatgagg 3961 ggggcccaca acatatcgtt tgtcacccca ccatctagca gatcctctag ccaaggcaca 4021 gtctcaaccg tgcctaaaga tattttggac tcctggactg gcgctttcaa cacgcgcagg 4081 cagccactct tcgctcacat tcgtaagcga ggggagtcac g //