Typing tool
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Typing tool
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Complete norovirus genomes
| KJ451060 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..1719
ORF2: 1700..3322
ORF3: 3322..3582
LOCUS KJ451060 3582 bp RNA linear VRL 31-DEC-2014
DEFINITION Norovirus TCDC-case/2012/GII.4 nonstructural protein and major
capsid protein genes, complete cds; and minor structural protein
gene, partial cds.
ACCESSION KJ451060
VERSION KJ451060.1
KEYWORDS .
SOURCE Norovirus TCDC-case/2012/GII.4
ORGANISM Norovirus TCDC-case/2012/GII.4
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3582)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Norovirus GII.4 Sydney/2012
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3582)
AUTHORS Wu,F.-T., Chen,H.-C., Wu,C.-Y. and Lu,C.-T.
TITLE Direct Submission
JOURNAL Submitted (13-FEB-2014) Centers for Disease Control Department of
Health, Center for Research and Diagnostics, No. 161, Kun-Yang
Street, Taipei, Taiwan 115, R.O.C.
FEATURES Location/Qualifiers
source 1..3582
/organism="Norovirus TCDC-case/2012/GII.4"
/mol_type="genomic RNA"
/isolate="TCDC-case/2012/GII.4"
/isolation_source="stool specimen from a 26-year old male
with diarrhea"
/host="Homo sapiens"
/db_xref="taxon:1508686"
/country="Taiwan"
/collection_date="Jan-2013"
CDS 1..1719
/note="ORF1"
/codon_start=1
/product="nonstructural protein"
/protein_id="AID51524.1"
/translation="MLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAARG
GNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTTPLPPGT
YEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPNVLEAAKKTIINVLEQTI
DPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFEEGKN
MTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRCARAFGGLMDELKAHCVTLP
VRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVLAAALEIMVKFSPEPHLA
QIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPD
IIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISEDLDGL
TFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETMIPHSQRPIQLMSLLGE
AALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFV
NEDGVE"
CDS 1700..3322
/note="VP1"
/codon_start=1
/product="major capsid protein"
/protein_id="AID51525.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSRNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTDRDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 3322..>3582
/note="VP2"
/codon_start=1
/product="minor structural protein"
/protein_id="AID51526.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLL"
ORIGIN
1 atgctcctga caggatccaa cgccaagagt atggacctag gcacaacacc aggcgactgc
61 ggctgcccct acatctacaa gagggggaat gactacgtgg tcataggagt ccatacggcc
121 gctgcccgtg gaggaaacac tgtcatatgt gccacccagg ggagtgaggg agaagccaca
181 cttgaaggag gtgacagtaa agggacatac tgtggcgcac caatcttggg cccagggagc
241 gctccgaagc tcagtaccaa gactaagttt tggagatcat ccacaacacc actcccacct
301 ggcacctacg aaccagccta cctcggtggc aaagacccta gagtcaaagg tggcccttca
361 ttgcaacaag ttatgaggga ccagctgaag ccattcacag aacccagagg caaaccacca
421 agaccaaatg tgttggaagc tgccaagaaa accatcatca atgtccttga gcaaacaatt
481 gatccacccc aaaaatggtc atttgcgcaa gcttgcgcat cccttgacaa aaccacctcc
541 agcggccacc cgcaccacat gcggaaaaac gactgttgga atggggagtc cttcacagga
601 aaattggctg atcaagcctc caaggccaac ctaatgtttg aagagggaaa gaacatgact
661 ccagtctaca caggtgcact taaagatgag ttggtaaaga ccgataaagt ttatggtaag
721 gtcaagaaga ggcttctgtg gggttcagat ctggcgacca tgatacggtg cgcccgagct
781 tttggaggcc ttatggatga actcaaggca cactgtgtca cacttcctgt cagagttggt
841 atgaacatga atgaggatgg ccccatcatc tttgagaagc actccagata tagatatcac
901 tatgatgctg attattcccg gtgggactca acacaacaaa gggatgtgct agcagcagca
961 ctagaaatca tggttaagtt ctctccagaa ccacacctgg cccagatagt tgcagaagac
1021 ctcctttccc ctagcgtgat ggatgtaggt gactttcaaa tatcaataag tgagggtctc
1081 ccctctgggg taccttgtac ctcccagtgg aattccatcg cccactggct cctcactctg
1141 tgtgcactct ctgaagtcac ggatctgtcc cctgatatca ttcaggccaa ctcccttttc
1201 tccttctatg gtgatgatga gattgtaagc acagacataa agttggaccc agagaagctg
1261 acagcaaaac tcaaggagta cgggctgaaa ccaacccgcc ccgacaaaac tgaaggaccc
1321 cttgttatct ctgaagacct ggatggcctg acattcctcc ggagaactgt gacccgtgat
1381 ccagctggct ggtttggaaa attggaacaa agttcaattc tcaggcaaat gtactggacc
1441 aggggtccca accatgaaga tccatttgaa acaatgatac cacactccca aagacccata
1501 caattgatgt ccttgctggg cgaggctgca ctccacggcc cggcattcta tagcaaaatt
1561 agcaaattag tcattgcaga gttgaaggaa ggtggcatgg atttttacgt acccagacaa
1621 gagccaatgt tcagatggat gagattctca gatctgagca cgtgggaggg cgatcgcaat
1681 ctggctccca gttttgtgaa tgaagatggc gtcgagtgac gccaacccat ctgatgggtc
1741 cgcagccaac ctcgtcccag aggtcaacaa tgaggttatg gctctggagc ccgttgttgg
1801 tgccgccatt gcggcacctg tagcgggcca acaaaatgta attgacccct ggattagaaa
1861 taattttgta caagcccctg gtggagagtt tacagtatcc cctagaaacg ctccaggtga
1921 aatactatgg agcgcgccct tgggccctga tctaaatccc tacctatccc atttggccag
1981 aatgtacaat ggttatgcag gtggttttga agtgcaggta attctcgcgg ggaacgcgtt
2041 caccgccggg aaggtcatat ttgcagcagt cccaccaaat tttccaactg aaggcttgag
2101 ccccagccag gtcactatgt tcccccatat agtagtagat gttaggcaac tagaacctgt
2161 gttgattccc ttacccgatg ttaggaataa tttctatcat tacaatcaat caaatgaccc
2221 caccattaag ttgatagcaa tgttgtatac accacttagg gctaataatg ctggggatga
2281 tgtcttcaca gtttcttgcc gagttctcac gagaccatcc cccgattttg atttcatatt
2341 tctagtgcca cccacagttg agtcaagaac taaaccattc tctgtcccag ttttaactgt
2401 tgaggagatg accaattcaa gattccccat tcctttggaa aagttgttca cgggtcccag
2461 cagtgccttt gttgtccaac cacaaaacgg taggtgcacg actgatggcg tgctcctagg
2521 caccacccaa ctgtctcctg tcaacatctg caccttcaga ggagatgtca cccatatcac
2581 aggtagtcgt aactacacaa tgaatttggc ttctcaaaat tggagcaatt atgacccaac
2641 agaagaaatc ccagcccctc taggaactcc agattttgtg gggaagattc aaggcgtgct
2701 cacccaaacc acaaggacag atggctcaac acgcggccac aaagccacag tgtacactgg
2761 gagcgccgac tttgctccaa aactaggtag agttcaattt gaaactgaca cagaccgtga
2821 ttttgaagct aaccaaaaca caaagttcac cccagttggt gtcatccaag atggtagcac
2881 cacccaccga aatgaacccc aacagtgggt gctcccaagt tactcaggca gaaatactcc
2941 taatgtgcat ctggcccccg ctgtagcccc cacttttccg ggtgagcaac ttctcttctt
3001 cagatccacc atgcccggat gcagcgggta ccccaacatg gatttagact gtctgctccc
3061 ccaggaatgg gtgcagtact tctaccaaga ggcagcccca gcacaatctg atgtggctct
3121 gctaagattt gtgaatccag acacaggtag ggttttgttt gagtgtaagc ttcataaatc
3181 aggctatgtt acagtggctc acactggcca acatgatttg gttatccccc ccaatggtta
3241 ttttaggttt gattcctggg tcaaccagtt ttacacgctt gcccccatgg gaaatggaac
3301 ggggcgtaga cgtgcactat aatggctgga gctttctttg ctggattggc atctgatgtc
3361 cttggctctg gacttggttc ccttatcaat gctggggctg gggccatcaa ccaaaaagtt
3421 gagtttgaaa ataacagaaa attgcaacaa gcatccttcc aatttagcag caatctacaa
3481 caggcttcct ttcaacatga caaagagatg ctccaagcac aaattgaggc caccaaaagg
3541 ctacaacagg aaatgatgaa agttaagcag gcaatgctcc ta
//